Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007793.1

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

46448 .. 46839

Gene Structure 392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007793.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atgaaggccaacgccatgacccatcgtcaaccccgacgaaggccagcccttgcggccctcacacaagttcaccgttcgggtaggcttagattcaatttcaaattccgaattcagaaatcacggaatcaggctgtggaggccggagactatatggcatgtttctgggcgcccgatcacaagcccccgacgacgttgaccattgagtttgattggaagatcaatgtggcagccaagggaatgaacgccgtgctggaaatttgctcggctctggaaaagtatgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

94

Amino Acids

10.78

Weight (kDa)

10.29

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AciI	CCGC	1 cut(s)	53
AcsI	RAATTY	3 cut(s)	101, 108, 255
AcyI	GRCGYC	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	2 cut(s)	94, 100
AhdI	GACNNNNNGTC	1 cut(s)	24
Alw26I	GTCTC	1 cut(s)	138
AoxI	GGCC	4 cut(s)	6, 41, 54, 138
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	3 cut(s)	101, 108, 255
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	239
BccI	CCATC	1 cut(s)	30
BceAI	ACGGC	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	138
BfoI	RGCGCY	1 cut(s)	170
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	2 cut(s)	54, 228
BlsI	GCNGC	2 cut(s)	55, 229
BmeRI	GACNNNNNGTC	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	239
BshFI	GGCC	4 cut(s)	8, 43, 56, 140
BshNI	GGYRCC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	138
BsnI	GGCC	4 cut(s)	8, 43, 56, 140
Bsp143I	GATC	2 cut(s)	172, 216
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	4 cut(s)	8, 43, 56, 140
BspLI	GGNNCC	1 cut(s)	168
BspT107I	GGYRCC	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	2 cut(s)	172, 216
BssNI	GRCGYC	1 cut(s)	167
BssT1I	CCWWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	74
BstACI	GRCGYC	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	2 cut(s)	175, 219
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	2 cut(s)	172, 216
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 137
BstNSI	RCATGY	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	239
BsuRI	GGCC	4 cut(s)	8, 43, 56, 140
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	55
CviAII	CATG	2 cut(s)	16, 156
DdeI	CTNAG	1 cut(s)	86
DinI	GGCGCC	1 cut(s)	168
DpnI	GATC	2 cut(s)	174, 218
DpnII	GATC	2 cut(s)	172, 216
DriI	GACNNNNNGTC	1 cut(s)	24
Eam1105I	GACNNNNNGTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	231
EgeI	GGCGCC	1 cut(s)	168
EheI	GGCGCC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	2 cut(s)	19, 159
FaiI	YATR	5 cut(s)	17, 150, 152, 157, 279
FatI	CATG	2 cut(s)	15, 155
Fnu4HI	GCNGC	2 cut(s)	54, 228
Fsp4HI	GCNGC	2 cut(s)	54, 228
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	2 cut(s)	54, 228
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	4 cut(s)	8, 43, 56, 140
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	167
Hin1II	CATG	2 cut(s)	19, 159
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HincII	GTYRAC	2 cut(s)	29, 195
HindII	GTYRAC	2 cut(s)	29, 195
HinfI	GANTC	2 cut(s)	90, 124
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	3 cut(s)	29, 70, 195
Hpy188I	TCNGA	2 cut(s)	107, 114
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	3 cut(s)	29, 70, 195
Hpy99I	CGWCG	3 cut(s)	39, 190, 193
HpyAV	CCTTC	1 cut(s)	33
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 137
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	191
Hsp92I	GRCGYC	1 cut(s)	167
Hsp92II	CATG	2 cut(s)	19, 159
HspAI	GCGC	1 cut(s)	167
KasI	GGCGCC	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	172, 216
LpnPI	CCDG	6 cut(s)	57, 113, 148, 154, 236, 254
Lsp1109I	GCAGC	1 cut(s)	239
MaeII	ACGT	1 cut(s)	191
MalI	GATC	2 cut(s)	174, 218
MboI	GATC	2 cut(s)	172, 216
MboII	GAAGA	1 cut(s)	226
MluCI	AATT	4 cut(s)	94, 101, 108, 255
Mly113I	GGCGCC	1 cut(s)	167
MnlI	CCTC	2 cut(s)	68, 130
MspI	CCGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	53, 137
NarI	GGCGCC	1 cut(s)	167
NdeII	GATC	2 cut(s)	172, 216
NlaIII	CATG	2 cut(s)	19, 159
NlaIV	GGNNCC	1 cut(s)	168
NmeAIII	GCCGAG	1 cut(s)	242
NspI	RCATGY	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PfeI	GAWTC	2 cut(s)	90, 124
PkrI	GCNGC	2 cut(s)	55, 229
PluTI	GGCGCC	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	55
SatI	GCNGC	2 cut(s)	54, 228
Sau3AI	GATC	2 cut(s)	172, 216
Sau96I	GGNCC	1 cut(s)	55
SetI	ASST	1 cut(s)	194
SfoI	GGCGCC	1 cut(s)	168
Sse9I	AATT	4 cut(s)	94, 101, 108, 255
SsiI	CCGC	1 cut(s)	53
SspDI	GGCGCC	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	1 cut(s)	194
TasI	AATT	4 cut(s)	94, 101, 108, 255
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	90, 124
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	2 cut(s)	17, 254
TspGWI	ACGGA	1 cut(s)	136
XapI	RAATTY	3 cut(s)	101, 108, 255
XceI	RCATGY	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.