Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001840.1

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Forward (+)

44894 .. 46657

Gene Structure 1764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001840.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggcggtttcgatgcggttcgaccttcaatctggcgccactaaatgcatctcagacgaaataaagagcaattccatgactgtgggcaagtactccaccgtcaatcccaatgagggctttcctcttcctgatacgcacaaagtcactgtcagggtgacctcacctaatggcaataattatcaccatggggatcttgtggatacgggtaattttgccttcactgcggcggagactggtgattattcagtatgcttttgggtagttgatcataagcctccgaccacggtcacgattgattttgactggaaaactggagttgaggccaaggactggtccaaggttgccaagaaagggcagattgaaatgatggaactcgagctgaaaaagctgtttgatactgtgacatccattcatgatgagatgttttatcttcgtgaaagggaggaagaaatgcaacaacttaatagagcaactaactccaagatggcgacgtttagcttcctttctcttgtagtttgcttgtctgtggccggtttgcaattatggcatctcaagatgttctttgagaggaagaagctcctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

194

Amino Acids

22.07

Weight (kDa)

6.07

Isoelectric Point (pI)

27.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	35
AccB7I	CCANNNNNTGG	1 cut(s)	330
AciI	CCGC	4 cut(s)	5, 16, 224, 227
AclWI	GGATC	1 cut(s)	198
AcoI	YGGCCR	1 cut(s)	528
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	3 cut(s)	113, 330, 351
AgsI	TTSAA	2 cut(s)	29, 362
AluBI	AGCT	4 cut(s)	379, 388, 498, 577
AluI	AGCT	4 cut(s)	379, 388, 498, 577
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	198
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	321, 528
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	333
AsuHPI	GGTGA	4 cut(s)	153, 166, 173, 248
AvaI	CYCGRG	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	333
BanI	GGYRCC	1 cut(s)	35
BccI	CCATC	2 cut(s)	361, 478
BciVI	GTATCC	1 cut(s)	193
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	583
BfoI	RGCGCY	1 cut(s)	39
BfuI	GTATCC	1 cut(s)	193
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
BmcAI	AGTACT	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	333
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	1 cut(s)	37
BmsI	GCATC	3 cut(s)	3, 57, 556
BoxI	GACNNNNGTC	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	536
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	4 cut(s)	184, 282, 324, 336
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 330, 351
Bse118I	RCCGGY	1 cut(s)	530
Bse1I	ACTGG	4 cut(s)	238, 308, 316, 335
BseDI	CCNNGG	4 cut(s)	184, 282, 324, 336
BseGI	GGATG	1 cut(s)	404
BseLI	CCNNNNNNNGG	3 cut(s)	113, 330, 351
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	4 cut(s)	238, 308, 316, 335
BseRI	GAGGAG	1 cut(s)	569
BshFI	GGCC	2 cut(s)	323, 530
BshNI	GGYRCC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	531
BslI	CCNNNNNNNGG	3 cut(s)	113, 330, 351
BsmAI	GTCTC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	323, 530
BsoBI	CYCGRG	1 cut(s)	374
Bsp143I	GATC	2 cut(s)	190, 265
Bsp19I	CCATGG	1 cut(s)	184
BspACI	CCGC	4 cut(s)	5, 16, 224, 227
BspANI	GGCC	2 cut(s)	323, 530
BspCNI	CTCAG	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	37
BspPI	GGATC	1 cut(s)	198
BspT107I	GGYRCC	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	530
BsrI	ACTGG	4 cut(s)	238, 308, 316, 335
BssAI	RCCGGY	1 cut(s)	530
BssECI	CCNNGG	4 cut(s)	184, 282, 324, 336
BssMI	GATC	2 cut(s)	190, 265
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	3 cut(s)	184, 324, 336
Bst4CI	ACNGT	5 cut(s)	82, 100, 148, 286, 400
Bst6I	CTCTTC	1 cut(s)	129
BstACI	GRCGYC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	52
BstDSI	CCRYGG	2 cut(s)	184, 282
BstEII	GGTNACC	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	404
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	2 cut(s)	193, 268
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	2 cut(s)	190, 265
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 385, 544
BstPAI	GACNNNNGTC	1 cut(s)	284
BstPI	GGTNACC	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	190
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	190
BsuI	GTATCC	1 cut(s)	193
BsuRI	GGCC	2 cut(s)	323, 530
BtgI	CCRYGG	2 cut(s)	184, 282
BtsCI	GGATG	1 cut(s)	404
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	2 cut(s)	144, 219
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	1 cut(s)	38
Cfr10I	RCCGGY	1 cut(s)	530
Cfr13I	GGNCC	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	3 cut(s)	76, 185, 413
CviJI	RGCY	8 cut(s)	117, 274, 323, 379, 388, 498, 530, 577
CviKI_1	RGCY	8 cut(s)	117, 274, 323, 379, 388, 498, 530, 577
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	52
DinI	GGCGCC	1 cut(s)	37
DpnI	GATC	2 cut(s)	192, 267
DpnII	GATC	2 cut(s)	190, 265
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
EciI	GGCGGA	1 cut(s)	242
Eco130I	CCWWGG	3 cut(s)	184, 324, 336
Eco47I	GGWCC	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	374
Eco91I	GGTNACC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	154
EcoT14I	CCWWGG	3 cut(s)	184, 324, 336
EcoT22I	ATGCAT	1 cut(s)	50
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
ErhI	CCWWGG	3 cut(s)	184, 324, 336
FaeI	CATG	3 cut(s)	79, 188, 416
FaiI	YATR	6 cut(s)	77, 186, 250, 270, 414, 544
FalI	AAGNNNNNCTT	2 cut(s)	545, 577
FatI	CATG	3 cut(s)	75, 184, 412
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	1 cut(s)	391
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	583
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	333
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	323, 530
HapII	CCGG	1 cut(s)	531
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	79, 188, 416
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HpaII	CCGG	1 cut(s)	531
HphI	GGTGA	4 cut(s)	153, 166, 173, 248
Hpy188I	TCNGA	2 cut(s)	55, 279
Hpy188III	TCNNGA	5 cut(s)	128, 289, 413, 434, 553
Hpy99I	CGWCG	1 cut(s)	493
HpyAV	CCTTC	2 cut(s)	35, 226
HpyCH4III	ACNGT	5 cut(s)	82, 100, 148, 286, 400
HpyCH4IV	ACGT	1 cut(s)	491
HpyCH4V	TGCA	3 cut(s)	48, 454, 538
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 385, 544
HpyF3I	CTNAG	1 cut(s)	52
HpySE526I	ACGT	1 cut(s)	491
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	3 cut(s)	79, 188, 416
HspAI	GCGC	1 cut(s)	36
KasI	GGCGCC	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	190, 265
LmnI	GCTCC	1 cut(s)	582
LpnPI	CCDG	8 cut(s)	18, 136, 141, 219, 289, 297, 316, 544
LweI	GCATC	3 cut(s)	3, 57, 556
MaeI	CTAG	1 cut(s)	583
MaeII	ACGT	1 cut(s)	491
MaeIII	GTNAC	4 cut(s)	142, 154, 286, 400
MalI	GATC	2 cut(s)	192, 267
MboI	GATC	2 cut(s)	190, 265
MboII	GAAGA	4 cut(s)	116, 422, 458, 583
MflI	RGATCY	1 cut(s)	190
MluCI	AATT	4 cut(s)	70, 175, 208, 539
Mly113I	GGCGCC	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	7 cut(s)	106, 132, 169, 285, 313, 436, 561
Mph1103I	ATGCAT	1 cut(s)	50
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	1 cut(s)	80
MspI	CCGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	3 cut(s)	221, 385, 544
NarI	GGCGCC	1 cut(s)	36
NcoI	CCATGG	1 cut(s)	184
NdeII	GATC	2 cut(s)	190, 265
NlaIII	CATG	3 cut(s)	79, 188, 416
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	4 cut(s)	142, 154, 286, 400
NsiI	ATGCAT	1 cut(s)	50
PaeR7I	CTCGAG	1 cut(s)	374
PagI	TCATGA	1 cut(s)	412
PflMI	CCANNNNNTGG	1 cut(s)	330
PkrI	GCNGC	1 cut(s)	226
PluTI	GGCGCC	1 cut(s)	39
PshAI	GACNNNNGTC	1 cut(s)	284
PspEI	GGTNACC	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	333
PspXI	VCTCGAGB	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	2 cut(s)	190, 265
Sau96I	GGNCC	1 cut(s)	333
ScaI	AGTACT	1 cut(s)	92
SetI	ASST	9 cut(s)	27, 161, 166, 342, 381, 390, 494, 500, 579
SfaNI	GCATC	3 cut(s)	3, 57, 556
SfoI	GGCGCC	1 cut(s)	37
Sfr274I	CTCGAG	1 cut(s)	374
SinI	GGWCC	1 cut(s)	333
SlaI	CTCGAG	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	80
SmlI	CTYRAG	2 cut(s)	374, 551
SmoI	CTYRAG	2 cut(s)	374, 551
Sse9I	AATT	4 cut(s)	70, 175, 208, 539
SsiI	CCGC	4 cut(s)	5, 16, 224, 227
SspDI	GGCGCC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	583
StyI	CCWWGG	3 cut(s)	184, 324, 336
TaaI	ACNGT	5 cut(s)	82, 100, 148, 286, 400
TaiI	ACGT	1 cut(s)	494
TaqI	TCGA	3 cut(s)	11, 21, 375
TasI	AATT	4 cut(s)	70, 175, 208, 539
TatI	WGTACW	1 cut(s)	90
TauI	GCSGC	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	2 cut(s)	151, 226
TseFI	GTSAC	4 cut(s)	142, 154, 286, 400
Tsp45I	GTSAC	4 cut(s)	142, 154, 286, 400
TspDTI	ATGAA	1 cut(s)	401
TspRI	CASTG	2 cut(s)	151, 226
Van91I	CCANNNNNTGG	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	333
XhoI	CTCGAG	1 cut(s)	374
XspI	CTAG	1 cut(s)	583
ZrmI	AGTACT	1 cut(s)	92
Zsp2I	ATGCAT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.