Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

3778385 .. 3778706

Gene Structure 322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGAATTAGAGCTTAAGAAGTTGTCCGATACGGTTACGTCCATTCACGAGGAGATGCTCTATCTCCGTGGAAGGGAAGAAGAGATGCAGGACCTCAACAGAACAACGAACTCGAGGATGGCCACGTTGAGTCTTCTTTCGCTTTTTGTTTGCTTAGGAGTCGCAGGCATGCAGTTGTGGCACCTCAAGACCTTCTTCGAGAAGAAGAAGCTTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

73

Amino Acids

8.45

Weight (kDa)

6.72

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	180
AcoI	YGGCCR	1 cut(s)	120
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflII	CTTAAG	1 cut(s)	14
AluBI	AGCT	2 cut(s)	13, 211
AluI	AGCT	2 cut(s)	13, 211
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	91
BalI	TGGCCA	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	180
BauI	CACGAG	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	125
BccI	CCATC	1 cut(s)	112
BfrI	CTTAAG	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	182
BmsI	GCATC	2 cut(s)	45, 75
BpiI	GAAGAC	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	154
BpuEI	CTTGAG	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	122
BshNI	GGYRCC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	73
BsnI	GGCC	1 cut(s)	122
BsoBI	CYCGRG	1 cut(s)	112
BspANI	GGCC	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	180
BspTI	CTTAAG	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	67
BssSI	CACGAG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	75
BstAFI	CTTAAG	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	166, 170
BstDEI	CTNAG	1 cut(s)	154
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	172
BstV2I	GAAGAC	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	166, 170
Cfr13I	GGNCC	1 cut(s)	91
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	3 cut(s)	13, 122, 211
CviKI_1	RGCY	3 cut(s)	13, 122, 211
DdeI	CTNAG	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	91
FaeI	CATG	1 cut(s)	172
FaiI	YATR	1 cut(s)	170
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FatI	CATG	1 cut(s)	168
FokI	GGATG	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	122
Hin1II	CATG	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	130, 159
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	3 cut(s)	47, 187, 199
HpyAV	CCTTC	2 cut(s)	66, 202
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	2 cut(s)	38, 125
HpyCH4V	TGCA	2 cut(s)	88, 172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	1 cut(s)	154
HpySE526I	ACGT	2 cut(s)	38, 125
Hsp92II	CATG	1 cut(s)	172
LpnPI	CCDG	2 cut(s)	74, 150
LweI	GCATC	2 cut(s)	45, 75
MaeII	ACGT	2 cut(s)	38, 125
MaeIII	GTNAC	1 cut(s)	34
MboII	GAAGA	6 cut(s)	89, 92, 125, 187, 214, 217
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	122
MlyI	GAGTC	2 cut(s)	139, 168
MnlI	CCTC	4 cut(s)	43, 104, 108, 194
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	122
MspCI	CTTAAG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	172
PaeI	GCATGC	1 cut(s)	172
PaeR7I	CTCGAG	1 cut(s)	112
PleI	GAGTC	2 cut(s)	138, 167
PpsI	GAGTC	2 cut(s)	138, 167
PpuMI	RGGWCCY	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	91
PspPPI	RGGWCCY	1 cut(s)	91
PspXI	VCTCGAGB	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	15
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	2 cut(s)	139, 168
SetI	ASST	7 cut(s)	15, 41, 96, 128, 186, 194, 213
SfaNI	GCATC	2 cut(s)	45, 75
Sfr274I	CTCGAG	1 cut(s)	112
SinI	GGWCC	1 cut(s)	91
SlaI	CTCGAG	1 cut(s)	112
SmlI	CTYRAG	3 cut(s)	14, 112, 185
SmoI	CTYRAG	3 cut(s)	14, 112, 185
SphI	GCATGC	1 cut(s)	172
Sse9I	AATT	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	2 cut(s)	41, 128
TaqI	TCGA	2 cut(s)	113, 198
TasI	AATT	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TspGWI	ACGGA	1 cut(s)	56
Vha464I	CTTAAG	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	91
XceI	RCATGY	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.