Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

9224059 .. 9225792

Gene Structure 1734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G26690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTTTCTCCGATCACTCAATCTCTGTACAATACTACTCTTCCTAGCGATTTCATCACAAGTTTCTCAATCTCTCCACTTCGAATTGCAATCTGGTCGAACAAAATGTATATCGGAAGACATAAAAAGCAATTCAATGACCGTCGGGAAGTACACCGTCGTTAACCCTAACGAAGCTCATCCTTCTCCTCAATCTCACAAGATCTCCATCAGAGTGACATCGAGTTACGGGAACACGTATCATCACGCGGAAGATGTAGAATCGGGACAATTCGCGTTCACGGCGGTGGAGTCTGGAGATTACATGGCTTGTTACACAGCTGTTGATCATAAACCTGAGGTTACATTGAGTATTGATTTCGATTGGAGAACTGGTGTTCAATCTAAAAGCTGGAGTAGTGTTGCTAAGAAGAGCCAAGTCGAAGTTATGGAGTTTGATGTAAAAAGACTTATTGAAACCGTCAATTCGATTCATGAAGAGATGTTTTATCTCAGAGAAAGGGAAGAAGAGATGCAGAATCTGAACCGGGCTACTAACTCGAAAATGGCGTGGTTGAGTTTCCTCTCTCTTTTCGTATGCTTAGGAGTCGCGGGAATGCAGTTTGTGCATTTGAAGACGTTTTTCGAGAAGAAGAAAGTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

214

Amino Acids

24.4

Weight (kDa)

6.45

Isoelectric Point (pI)

52.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	25 - 209	3.5e-51	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	248, 275, 590
AciI	CCGC	3 cut(s)	248, 284, 590
AfaI	GTAC	2 cut(s)	28, 152
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	4 cut(s)	135, 380, 455, 613
AleI	CACNNNNGTG	1 cut(s)	284
AluBI	AGCT	3 cut(s)	176, 320, 390
AluI	AGCT	3 cut(s)	176, 320, 390
AlwNI	CAGNNNCTG	1 cut(s)	520
AsuC2I	CCSGG	1 cut(s)	527
AsuII	TTCGAA	1 cut(s)	81
AxyI	CCTNAGG	1 cut(s)	336
BbsI	GAAGAC	2 cut(s)	123, 620
BccI	CCATC	1 cut(s)	215
BceAI	ACGGC	1 cut(s)	297
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BclI	TGATCA	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	527
BfaI	CTAG	1 cut(s)	44
BglII	AGATCT	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	527
BmrFI	CCNGG	1 cut(s)	527
BmsI	GCATC	1 cut(s)	501
BpiI	GAAGAC	2 cut(s)	123, 620
BpmI	CTGGAG	2 cut(s)	315, 412
Bpu10I	CCTNAGC	1 cut(s)	580
Bpu14I	TTCGAA	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	527
BsaAI	YACGTR	1 cut(s)	237
BsaBI	GATNNNNATC	1 cut(s)	206
BsaXI	ACNNNNNCTCC	4 cut(s)	188, 218, 358, 388
Bse1I	ACTGG	1 cut(s)	376
Bse21I	CCTNAGG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	206
BseGI	GGATG	1 cut(s)	178
BseJI	GATNNNNATC	1 cut(s)	206
BseMII	CTCAG	2 cut(s)	327, 505
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	1 cut(s)	177
Bsh1236I	CGCG	3 cut(s)	248, 275, 590
BsiSI	CCGG	1 cut(s)	526
BslFI	GGGAC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	279
BsmI	GAATGC	1 cut(s)	600
Bsp119I	TTCGAA	1 cut(s)	81
Bsp1407I	TGTACA	1 cut(s)	26
Bsp143I	GATC	3 cut(s)	11, 201, 325
BspACI	CCGC	3 cut(s)	248, 284, 590
BspCNI	CTCAG	2 cut(s)	328, 504
BspFNI	CGCG	3 cut(s)	248, 275, 590
BspHI	TCATGA	1 cut(s)	472
BspQI	GCTCTTC	1 cut(s)	404
BspT104I	TTCGAA	1 cut(s)	81
BsrGI	TGTACA	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	376
BssMI	GATC	3 cut(s)	11, 201, 325
Bst4CI	ACNGT	3 cut(s)	142, 157, 460
Bst6I	CTCTTC	4 cut(s)	44, 404, 471, 501
BstAPI	GCANNNNNTGC	1 cut(s)	604
BstAUI	TGTACA	1 cut(s)	26
BstBAI	YACGTR	1 cut(s)	237
BstBI	TTCGAA	1 cut(s)	81
BstDEI	CTNAG	4 cut(s)	336, 405, 491, 580
BstF5I	GGATG	1 cut(s)	178
BstFNI	CGCG	3 cut(s)	248, 275, 590
BstKTI	GATC	3 cut(s)	14, 204, 328
BstMBI	GATC	3 cut(s)	11, 201, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 604
BstSCI	CCNGG	1 cut(s)	525
BstUI	CGCG	3 cut(s)	248, 275, 590
BstV2I	GAAGAC	2 cut(s)	123, 620
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
Bsu36I	CCTNAGG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	178
CaiI	CAGNNNCTG	1 cut(s)	520
CciI	TCATGA	1 cut(s)	472
Csp6I	GTAC	2 cut(s)	27, 151
CviAII	CATG	2 cut(s)	304, 473
CviJI	RGCY	6 cut(s)	176, 308, 320, 390, 414, 530
CviKI_1	RGCY	6 cut(s)	176, 308, 320, 390, 414, 530
CviQI	GTAC	2 cut(s)	27, 151
DdeI	CTNAG	4 cut(s)	336, 405, 491, 580
DpnI	GATC	3 cut(s)	13, 203, 327
DpnII	GATC	3 cut(s)	11, 201, 325
Eam1104I	CTCTTC	4 cut(s)	44, 404, 471, 501
EarI	CTCTTC	4 cut(s)	44, 404, 471, 501
Eco81I	CCTNAGG	1 cut(s)	336
FaeI	CATG	2 cut(s)	307, 476
FaiI	YATR	7 cut(s)	110, 122, 305, 330, 428, 474, 577
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	2 cut(s)	303, 472
FauI	CCCGC	1 cut(s)	583
FbaI	TGATCA	1 cut(s)	325
FokI	GGATG	1 cut(s)	165
FspBI	CTAG	1 cut(s)	44
GsuI	CTGGAG	2 cut(s)	315, 412
HapII	CCGG	1 cut(s)	526
Hin1II	CATG	2 cut(s)	307, 476
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	5 cut(s)	260, 290, 469, 517, 585
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	1 cut(s)	526
Hpy166II	GTNNAC	3 cut(s)	153, 163, 279
Hpy188I	TCNGA	5 cut(s)	11, 115, 212, 494, 522
Hpy188III	TCNNGA	5 cut(s)	145, 264, 294, 473, 625
Hpy8I	GTNNAC	3 cut(s)	153, 163, 279
Hpy99I	CGWCG	2 cut(s)	146, 161
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	3 cut(s)	142, 157, 460
HpyCH4IV	ACGT	2 cut(s)	236, 617
HpyCH4V	TGCA	4 cut(s)	88, 514, 598, 607
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 604
HpyF3I	CTNAG	4 cut(s)	336, 405, 491, 580
HpySE526I	ACGT	2 cut(s)	236, 617
Hsp92II	CATG	2 cut(s)	307, 476
Ksp22I	TGATCA	1 cut(s)	325
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	11, 201, 325
LguI	GCTCTTC	1 cut(s)	404
LpnPI	CCDG	6 cut(s)	78, 279, 348, 357, 376, 539
LweI	GCATC	1 cut(s)	501
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	2 cut(s)	236, 617
MaeIII	GTNAC	4 cut(s)	214, 224, 311, 340
MalI	GATC	3 cut(s)	13, 203, 327
MboI	GATC	3 cut(s)	11, 201, 325
MflI	RGATCY	1 cut(s)	201
MluCI	AATT	4 cut(s)	83, 130, 269, 463
MlyI	GAGTC	2 cut(s)	299, 594
MnlI	CCTC	3 cut(s)	198, 331, 572
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	2 cut(s)	212, 284
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	526
MspR9I	CCNGG	1 cut(s)	527
Mva1269I	GAATGC	1 cut(s)	600
MvnI	CGCG	3 cut(s)	248, 275, 590
MwoI	GCNNNNNNNGC	2 cut(s)	281, 604
NciI	CCSGG	1 cut(s)	527
NdeII	GATC	3 cut(s)	11, 201, 325
NlaIII	CATG	2 cut(s)	307, 476
NmuCI	GTSAC	1 cut(s)	214
NspV	TTCGAA	1 cut(s)	81
OliI	CACNNNNGTG	1 cut(s)	284
PagI	TCATGA	1 cut(s)	472
PciSI	GCTCTTC	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	1 cut(s)	545
PctI	GAATGC	1 cut(s)	600
PfeI	GAWTC	3 cut(s)	260, 469, 517
PleI	GAGTC	2 cut(s)	298, 593
PpsI	GAGTC	2 cut(s)	298, 593
Ppu21I	YACGTR	1 cut(s)	237
PstNI	CAGNNNCTG	1 cut(s)	520
PsuI	RGATCY	1 cut(s)	201
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	2 cut(s)	28, 152
RsaNI	GTAC	2 cut(s)	27, 151
RseI	CAYNNNNRTG	2 cut(s)	212, 284
SapI	GCTCTTC	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	162
Sau3AI	GATC	3 cut(s)	11, 201, 325
SchI	GAGTC	2 cut(s)	299, 594
ScrFI	CCNGG	1 cut(s)	527
SetI	ASST	7 cut(s)	178, 239, 322, 337, 342, 392, 620
SfaNI	GCATC	1 cut(s)	501
SfuI	TTCGAA	1 cut(s)	81
SmiMI	CAYNNNNRTG	2 cut(s)	212, 284
Sse9I	AATT	4 cut(s)	83, 130, 269, 463
SsiI	CCGC	3 cut(s)	248, 284, 590
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	525
TaaI	ACNGT	3 cut(s)	142, 157, 460
TaiI	ACGT	2 cut(s)	239, 620
TaqI	TCGA	8 cut(s)	81, 97, 221, 360, 420, 467, 539, 624
TasI	AATT	4 cut(s)	83, 130, 269, 463
TatI	WGTACW	2 cut(s)	26, 150
TfiI	GAWTC	3 cut(s)	260, 469, 517
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	3 cut(s)	42, 461, 489
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.