MD13G1087300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0016321
Physical Location & Seq
Forward (+)
6121613 .. 6123368
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1087300.v1.1.491

Sequence Viewer

Length: 327 bp
ATGGCGCTCCACAAACCCTGTGGCTGTGGCCCTCTCGTTTCGAGCCCAGCACTTACTCCTCCCTCCAAAACCCCAATGTCCACCGTTATTCATATTCTTCGTCCGCCACTAAAACCCATATTCAGAAACTCCGCCGTAAAGCCGCCGAGAGCCACGGCGGCGACGCCCCAGAAGTATGTTTATCCTGACCCAATTCCCCAGTTCGCAGAATCTGAGACTCAGAAGTTCAGGGCAGAGCTTTCCAGGAGGTTAGTTAAGGAGAAGGAGACTTTTGGGCATGACCTCCATAGTGTGGTAGACGTCTGTGCAGAGCCAGTGAGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.92

Weight (kDa)

9.55

Isoelectric Point (pI)

53.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g34960
malus_domestica MD13G1087300.v1.1 MD16G1087800.v1.1
prunus_persica Prupe.1G258900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0444421
rosa_laevigata RLG00000005831
rosa_roxburghii Rroxscaffold_5G00384950
rosa_rugosa Rorug04G0353000
rosa_samantha Rh4AG413000 Rh4AG413100 Rh4BG424500 Rh4BG424600 Rh4CG438900 Rh4DG419900
rosa_wichuraiana Rw4G035480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 303
AccB7I CCANNNNNTGG 1 cut(s) 292
AccI GTMKAC 1 cut(s) 297
AciI CCGC 4 cut(s) 104, 132, 143, 158
AcyI GRCGYC 2 cut(s) 164, 300
AfiI CCNNNNNNNGG 1 cut(s) 292
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
Alw26I GTCTC 2 cut(s) 209, 260
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 1 cut(s) 28
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 47
BceAI ACGGC 2 cut(s) 119, 171
BciT130I CCWGG 1 cut(s) 244
BcoDI GTCTC 2 cut(s) 209, 260
BfoI RGCGCY 1 cut(s) 8
BglI GCCNNNNNGGC 2 cut(s) 158, 319
BisI GCNGC 2 cut(s) 143, 159
BlsI GCNGC 2 cut(s) 144, 160
Bme1390I CCNGG 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 244
BmrI ACTGGG 1 cut(s) 193
BmuI ACTGGG 1 cut(s) 193
BsaHI GRCGYC 2 cut(s) 164, 300
BsaJI CCNNGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse1I ACTGG 2 cut(s) 199, 314
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMII CTCAG 2 cut(s) 204, 233
BseNI ACTGG 2 cut(s) 199, 314
BseRI GAGGAG 1 cut(s) 48
BseYI CCCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 327
BshFI GGCC 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 2 cut(s) 209, 260
BsnI GGCC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 47
BspACI CCGC 4 cut(s) 104, 132, 143, 158
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 2 cut(s) 205, 232
BsrI ACTGG 2 cut(s) 199, 314
BssECI CCNNGG 1 cut(s) 153
BssNI GRCGYC 2 cut(s) 164, 300
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 85
BstACI GRCGYC 2 cut(s) 164, 300
BstDEI CTNAG 2 cut(s) 213, 219
BstDSI CCRYGG 1 cut(s) 153
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstMAI GTCTC 2 cut(s) 209, 260
BstMWI GCNNNNNNNGC 2 cut(s) 158, 319
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 242
BsuRI GGCC 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 321
CaiI CAGNNNCTG 1 cut(s) 212
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 29
CseI GACGC 1 cut(s) 172
CspCI CAANNNNNGTGG 1 cut(s) 36
CviAII CATG 1 cut(s) 278
CviJI RGCY 8 cut(s) 24, 30, 45, 142, 152, 238, 313, 322
CviKI_1 RGCY 8 cut(s) 24, 30, 45, 142, 152, 238, 313, 322
DdeI CTNAG 2 cut(s) 213, 219
EciI GGCGGA 2 cut(s) 93, 121
Eco24I GRGCYC 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 47
FaeI CATG 1 cut(s) 281
FaiI YATR 6 cut(s) 93, 119, 177, 279, 288, 325
FatI CATG 1 cut(s) 277
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 2 cut(s) 143, 159
FriOI GRGCYC 1 cut(s) 47
Fsp4HI GCNGC 2 cut(s) 143, 159
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 143, 159
GsaI CCCAGC 1 cut(s) 50
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 30
HgaI GACGC 1 cut(s) 172
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 2 cut(s) 164, 300
Hin1II CATG 1 cut(s) 281
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 2 cut(s) 209, 217
Hpy166II GTNNAC 2 cut(s) 81, 298
Hpy188I TCNGA 3 cut(s) 125, 214, 222
Hpy188III TCNNGA 1 cut(s) 185
Hpy8I GTNNAC 2 cut(s) 81, 298
Hpy99I CGWCG 1 cut(s) 166
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 319
HpyF3I CTNAG 2 cut(s) 213, 219
HpySE526I ACGT 1 cut(s) 300
Hsp92I GRCGYC 2 cut(s) 164, 300
Hsp92II CATG 1 cut(s) 281
HspAI GCGC 1 cut(s) 5
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 8 cut(s) 31, 60, 182, 198, 212, 214, 229, 256
MaeII ACGT 1 cut(s) 300
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 1 cut(s) 192
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 6 cut(s) 42, 69, 73, 240, 293, 312
MseI TTAA 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 158, 319
NlaIII CATG 1 cut(s) 281
NmeAIII GCCGAG 1 cut(s) 171
PfeI GAWTC 1 cut(s) 209
PflMI CCANNNNNTGG 1 cut(s) 292
PfoI TCCNGGA 1 cut(s) 242
PkrI GCNGC 2 cut(s) 144, 160
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 1 cut(s) 242
PspPI GGNCC 1 cut(s) 29
PstNI CAGNNNCTG 1 cut(s) 212
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 2 cut(s) 143, 159
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 244
SduI GDGCHC 1 cut(s) 47
SetI ASST 4 cut(s) 240, 251, 285, 303
Sse9I AATT 1 cut(s) 192
SsiI CCGC 4 cut(s) 104, 132, 143, 158
StyD4I CCNGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 1 cut(s) 303
TaqI TCGA 1 cut(s) 41
TasI AATT 1 cut(s) 192
TauI GCSGC 2 cut(s) 145, 161
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 1 cut(s) 321
TspDTI ATGAA 1 cut(s) 80
TspRI CASTG 1 cut(s) 321
Van91I CCANNNNNTGG 1 cut(s) 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 297
ZraI GACGTC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.