MD16G1087800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0016321
Physical Location & Seq
Forward (+)
6059008 .. 6060668
1661 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1087800.v1.1.491

Sequence Viewer

Length: 180 bp
ATGAAATGCATGTTTGATTGTGTAATTAGCTTGAATTGTATGTTGCAGGAGACCCAGAATTTCAGGGCTGAGCATTCCAGGAGGCTGTTGGAGGAGAAAGAGACTTTTGGGCCTGACCTCCACGGTGTGATAGGCGTCTGTGCAGAGCCTGTGAGGCCACGAGTTTTGCTTGACCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.77

Weight (kDa)

5.53

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g34960
malus_domestica MD13G1087300.v1.1 MD16G1087800.v1.1
prunus_persica Prupe.1G258900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0444421
rosa_laevigata RLG00000005831
rosa_roxburghii Rroxscaffold_5G00384950
rosa_rugosa Rorug04G0353000
rosa_samantha Rh4AG413000 Rh4AG413100 Rh4BG424500 Rh4BG424600 Rh4CG438900 Rh4DG419900
rosa_wichuraiana Rw4G035480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 58
AcyI GRCGYC 1 cut(s) 135
AdeI CACNNNGTG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 34
AjnI CCWGG 1 cut(s) 77
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw26I GTCTC 2 cut(s) 44, 95
AlwNI CAGNNNCTG 1 cut(s) 149
AoxI GGCC 2 cut(s) 110, 155
ApoI RAATTY 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 110
BauI CACGAG 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 79
BcoDI GTCTC 2 cut(s) 44, 95
BglI GCCNNNNNGGC 1 cut(s) 154
BlpI GCTNAGC 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 79
Bpu1102I GCTNAGC 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 107
BsgI GTGCAG 1 cut(s) 162
BshFI GGCC 2 cut(s) 112, 157
BsmAI GTCTC 2 cut(s) 44, 95
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 2 cut(s) 112, 157
Bso31I GGTCTC 1 cut(s) 44
Bsp1720I GCTNAGC 1 cut(s) 69
BspANI GGCC 2 cut(s) 112, 157
BspCNI CTCAG 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 121
BssNI GRCGYC 1 cut(s) 135
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 69
BstDSI CCRYGG 1 cut(s) 121
BstMAI GTCTC 2 cut(s) 44, 95
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNI CCWGG 1 cut(s) 79
BstNSI RCATGY 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 77
BsuRI GGCC 2 cut(s) 112, 157
BtgI CCRYGG 1 cut(s) 121
CaiI CAGNNNCTG 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 110
CseI GACGC 1 cut(s) 124
CspCI CAANNNNNGTGG 1 cut(s) 147
CviAII CATG 1 cut(s) 10
CviJI RGCY 6 cut(s) 30, 68, 85, 112, 148, 157
CviKI_1 RGCY 6 cut(s) 30, 68, 85, 112, 148, 157
DdeI CTNAG 1 cut(s) 69
DraIII CACNNNGTG 1 cut(s) 127
Eco31I GGTCTC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 77
EcoT22I ATGCAT 1 cut(s) 11
FaeI CATG 1 cut(s) 13
FaiI YATR 2 cut(s) 11, 41
FatI CATG 1 cut(s) 9
HaeIII GGCC 2 cut(s) 112, 157
HgaI GACGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 3 cut(s) 9, 46, 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 1 cut(s) 69
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 1 cut(s) 13
LpnPI CCDG 7 cut(s) 32, 49, 64, 68, 91, 126, 162
MluCI AATT 3 cut(s) 24, 34, 58
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 4 cut(s) 75, 85, 128, 147
Mph1103I ATGCAT 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 79
Mva1269I GAATGC 1 cut(s) 73
MvaI CCWGG 1 cut(s) 79
MwoI GCNNNNNNNGC 1 cut(s) 154
NlaIII CATG 1 cut(s) 13
NsiI ATGCAT 1 cut(s) 11
NspI RCATGY 1 cut(s) 13
PctI GAATGC 1 cut(s) 73
PfoI TCCNGGA 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 77
PspGI CCWGG 1 cut(s) 77
PspPI GGNCC 1 cut(s) 110
PstNI CAGNNNCTG 1 cut(s) 149
Sau96I GGNCC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 79
SetI ASST 2 cut(s) 32, 120
Sse9I AATT 3 cut(s) 24, 34, 58
StyD4I CCNGG 1 cut(s) 77
TaaI ACNGT 1 cut(s) 125
TasI AATT 3 cut(s) 24, 34, 58
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 58
XceI RCATGY 1 cut(s) 13
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
Zsp2I ATGCAT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.