Rh4CG438900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0016321
Physical Location & Seq
Reverse (-)
67647941 .. 67651264
3324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG438900.1

Sequence Viewer

Length: 675 bp
ATGACGACGGTGGAGGAGATCCAGGTAGGTCGGTTGCTCGGTCTGGCTCCGTACGGCCACATGGATGACGACGACAGTGGAAGAGATCCAAGCAGGTCGGTCGCTCGGCCTGGTTCCGTACGGCCACATCGACGACGACGACGGTGGAAGAGATCCACGCAGGTCTGTTGCTTGGTCTGGCTCCGTACGGCCACATCTACGACGACAATGGTGGAGGAGATCCAGGCAGGTCGATTGCTCGGTCTGGTTCCGTACGGCCACATCGACGACGACGGTGGAGGAGATCAGAGTCAGAAACACCACCACAAAGCCACTAAGAGCCACCGCCAGCACACCCCAGAATACGTGTACCCGGACCCAATTCCGGAATTTGCAGAATCCGAGACCCACAAGTTCAGAGCTGAGCTTTCCAGGAAGCTATTGAAGGACAAGGCGACTTTTGGGGATGACTTCAGTAGTGTCATTGACGTATGCGCCGAGATATTTAGTGAATTCTTGCTCAAGGAGTATGGAGGACCTGGAACATTGTTGGTGGATCCCTTCACTGATATGTTAGTTGCTCTCAAGGAGAAGGAACTACCTGGAGCACCTTTGGCTGCAAGGGCAACACTGTTATGGGCTCAAAACTATTTGGATCAAGACAGGGATGTTTGGAATTCGAAATCGTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.27

Weight (kDa)

6.51

Isoelectric Point (pI)

55.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g34960
malus_domestica MD13G1087300.v1.1 MD16G1087800.v1.1
prunus_persica Prupe.1G258900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0444421
rosa_laevigata RLG00000005831
rosa_roxburghii Rroxscaffold_5G00384950
rosa_rugosa Rorug04G0353000
rosa_samantha Rh4AG413000 Rh4AG413100 Rh4BG424500 Rh4BG424600 Rh4CG438900 Rh4DG419900
rosa_wichuraiana Rw4G035480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 84, 151, 218
AccIII TCCGGA 1 cut(s) 364
AciI CCGC 1 cut(s) 325
AclWI GGATC 7 cut(s) 13, 80, 147, 214, 530, 543, 642
AcoI YGGCCR 4 cut(s) 55, 122, 189, 256
AcsI RAATTY 3 cut(s) 368, 491, 655
AcuI CTGAAG 1 cut(s) 436
AfaI GTAC 5 cut(s) 53, 120, 187, 254, 350
AfiI CCNNNNNNNGG 1 cut(s) 364
AflIII ACRYGT 1 cut(s) 345
AgsI TTSAA 1 cut(s) 424
AjnI CCWGG 6 cut(s) 21, 109, 222, 410, 517, 580
AluBI AGCT 3 cut(s) 401, 406, 418
AluI AGCT 3 cut(s) 401, 406, 418
Alw21I GWGCWC 1 cut(s) 589
Alw26I GTCTC 1 cut(s) 377
AlwI GGATC 7 cut(s) 13, 80, 147, 214, 530, 543, 642
Aor13HI TCCGGA 1 cut(s) 364
AoxI GGCC 5 cut(s) 55, 107, 122, 189, 256
ApeKI GCWGC 1 cut(s) 596
ApoI RAATTY 3 cut(s) 368, 491, 655
AspLEI GCGC 1 cut(s) 476
AspS9I GGNCC 2 cut(s) 355, 515
AsuC2I CCSGG 1 cut(s) 353
AsuII TTCGAA 1 cut(s) 659
AvaII GGWCC 2 cut(s) 355, 515
BamHI GGATCC 1 cut(s) 535
BanII GRGCYC 1 cut(s) 622
Bbv12I GWGCWC 1 cut(s) 589
BbvI GCAGC 1 cut(s) 583
BceAI ACGGC 4 cut(s) 70, 137, 204, 271
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciT130I CCWGG 6 cut(s) 23, 111, 224, 412, 519, 582
BcnI CCSGG 1 cut(s) 353
BcoDI GTCTC 1 cut(s) 377
BfuAI ACCTGC 3 cut(s) 84, 151, 218
BisI GCNGC 1 cut(s) 597
BlpI GCTNAGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 598
Bme1390I CCNGG 7 cut(s) 23, 111, 224, 353, 412, 519, 582
Bme18I GGWCC 2 cut(s) 355, 515
BmgT120I GGNCC 2 cut(s) 355, 515
BmiI GGNNCC 6 cut(s) 48, 115, 182, 249, 357, 537
BmrFI CCNGG 7 cut(s) 23, 111, 224, 353, 412, 519, 582
BpmI CTGGAG 1 cut(s) 603
Bpu1102I GCTNAGC 1 cut(s) 402
Bpu14I TTCGAA 1 cut(s) 659
BpuEI CTTGAG 2 cut(s) 485, 548
BpuMI CCSGG 1 cut(s) 353
BsaAI YACGTR 1 cut(s) 346
BsaI GGTCTC 1 cut(s) 377
BsaWI WCCGGW 1 cut(s) 364
Bsc4I CCNNNNNNNGG 1 cut(s) 364
BseAI TCCGGA 1 cut(s) 364
BseBI CCWGG 6 cut(s) 23, 111, 224, 412, 519, 582
BseGI GGATG 3 cut(s) 70, 451, 652
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 393
BseRI GAGGAG 3 cut(s) 29, 230, 294
BseXI GCAGC 1 cut(s) 583
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 5 cut(s) 57, 109, 124, 191, 258
BsiEI CGRYCG 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 589
BsiSI CCGG 2 cut(s) 353, 365
BsiWI CGTACG 4 cut(s) 51, 118, 185, 252
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 377
BsnI GGCC 5 cut(s) 57, 109, 124, 191, 258
Bso31I GGTCTC 1 cut(s) 377
Bsp119I TTCGAA 1 cut(s) 659
Bsp1286I GDGCHC 2 cut(s) 589, 622
Bsp13I TCCGGA 1 cut(s) 364
Bsp143I GATC 7 cut(s) 18, 85, 152, 219, 283, 535, 634
Bsp1720I GCTNAGC 1 cut(s) 402
BspACI CCGC 1 cut(s) 325
BspANI GGCC 5 cut(s) 57, 109, 124, 191, 258
BspCNI CTCAG 1 cut(s) 394
BspEI TCCGGA 1 cut(s) 364
BspLI GGNNCC 6 cut(s) 48, 115, 182, 249, 357, 537
BspMI ACCTGC 3 cut(s) 84, 151, 218
BspPI GGATC 7 cut(s) 13, 80, 147, 214, 530, 543, 642
BspT104I TTCGAA 1 cut(s) 659
BspTNI GGTCTC 1 cut(s) 377
BssMI GATC 7 cut(s) 18, 85, 152, 219, 283, 535, 634
Bst2UI CCWGG 6 cut(s) 23, 111, 224, 412, 519, 582
Bst4CI ACNGT 5 cut(s) 10, 77, 144, 275, 612
Bst6I CTCTTC 2 cut(s) 76, 143
BstBAI YACGTR 1 cut(s) 346
BstBI TTCGAA 1 cut(s) 659
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 2 cut(s) 315, 402
BstF5I GGATG 3 cut(s) 70, 451, 652
BstHHI GCGC 1 cut(s) 476
BstKTI GATC 7 cut(s) 21, 88, 155, 222, 286, 538, 637
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 7 cut(s) 18, 85, 152, 219, 283, 535, 634
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 2 cut(s) 593, 602
BstNI CCWGG 6 cut(s) 23, 111, 224, 412, 519, 582
BstSCI CCNGG 7 cut(s) 21, 109, 222, 351, 410, 517, 580
BstV1I GCAGC 1 cut(s) 583
BstX2I RGATCY 5 cut(s) 18, 85, 152, 219, 535
BstYI RGATCY 5 cut(s) 18, 85, 152, 219, 535
BsuRI GGCC 5 cut(s) 57, 109, 124, 191, 258
BtsCI GGATG 3 cut(s) 70, 451, 652
BtsIMutI CAGTG 3 cut(s) 82, 543, 608
BveI ACCTGC 3 cut(s) 84, 151, 218
Cac8I GCNNGC 1 cut(s) 329
CfoI GCGC 1 cut(s) 476
Cfr13I GGNCC 2 cut(s) 355, 515
Csp6I GTAC 5 cut(s) 52, 119, 186, 253, 349
CviAII CATG 1 cut(s) 61
CviQI GTAC 5 cut(s) 52, 119, 186, 253, 349
DdeI CTNAG 2 cut(s) 315, 402
DpnI GATC 7 cut(s) 20, 87, 154, 221, 285, 537, 636
DpnII GATC 7 cut(s) 18, 85, 152, 219, 283, 535, 634
EaeI YGGCCR 4 cut(s) 55, 122, 189, 256
Eam1104I CTCTTC 2 cut(s) 76, 143
EarI CTCTTC 2 cut(s) 76, 143
Eco24I GRGCYC 1 cut(s) 622
Eco31I GGTCTC 1 cut(s) 377
Eco47I GGWCC 2 cut(s) 355, 515
Eco57I CTGAAG 1 cut(s) 436
EcoO109I RGGNCCY 1 cut(s) 515
EcoRI GAATTC 2 cut(s) 491, 655
EcoRII CCWGG 6 cut(s) 21, 109, 222, 410, 517, 580
EcoT38I GRGCYC 1 cut(s) 622
FaeI CATG 1 cut(s) 64
FaiI YATR 5 cut(s) 62, 472, 510, 551, 616
FatI CATG 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 597
FokI GGATG 3 cut(s) 77, 458, 659
FriOI GRGCYC 1 cut(s) 622
Fsp4HI GCNGC 1 cut(s) 597
GlaI GCGC 1 cut(s) 475
GluI GCNGC 1 cut(s) 597
GsuI CTGGAG 1 cut(s) 603
HaeIII GGCC 5 cut(s) 57, 109, 124, 191, 258
HapII CCGG 2 cut(s) 353, 365
HhaI GCGC 1 cut(s) 476
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 474
HinP1I GCGC 1 cut(s) 474
HinfI GANTC 2 cut(s) 289, 377
HpaII CCGG 2 cut(s) 353, 365
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 4 cut(s) 288, 294, 382, 398
Hpy188III TCNNGA 2 cut(s) 365, 638
Hpy8I GTNNAC 1 cut(s) 349
HpyAV CCTTC 3 cut(s) 418, 550, 565
HpyCH4III ACNGT 5 cut(s) 10, 77, 144, 275, 612
HpyCH4IV ACGT 2 cut(s) 345, 468
HpyCH4V TGCA 2 cut(s) 374, 599
HpyF10VI GCNNNNNNNGC 2 cut(s) 593, 602
HpyF3I CTNAG 2 cut(s) 315, 402
HpySE526I ACGT 2 cut(s) 345, 468
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 474
Kpn2I TCCGGA 1 cut(s) 364
Kzo9I GATC 7 cut(s) 18, 85, 152, 219, 283, 535, 634
LmnI GCTCC 3 cut(s) 52, 186, 584
Lsp1109I GCAGC 1 cut(s) 583
MaeII ACGT 2 cut(s) 345, 468
MalI GATC 7 cut(s) 20, 87, 154, 221, 285, 537, 636
MboI GATC 7 cut(s) 18, 85, 152, 219, 283, 535, 634
MboII GAAGA 2 cut(s) 93, 160
MflI RGATCY 5 cut(s) 18, 85, 152, 219, 535
MhlI GDGCHC 2 cut(s) 589, 622
MluCI AATT 4 cut(s) 360, 368, 491, 655
MlyI GAGTC 1 cut(s) 298
MnlI CCTC 4 cut(s) 7, 208, 272, 506
MroI TCCGGA 1 cut(s) 364
MslI CAYNNNNRTG 3 cut(s) 63, 548, 613
MspI CCGG 2 cut(s) 353, 365
MspR9I CCNGG 7 cut(s) 23, 111, 224, 353, 412, 519, 582
MvaI CCWGG 6 cut(s) 23, 111, 224, 412, 519, 582
MwoI GCNNNNNNNGC 2 cut(s) 593, 602
NciI CCSGG 1 cut(s) 353
NdeII GATC 7 cut(s) 18, 85, 152, 219, 283, 535, 634
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 6 cut(s) 48, 115, 182, 249, 357, 537
NmeAIII GCCGAG 2 cut(s) 85, 502
NspV TTCGAA 1 cut(s) 659
PcsI WCGNNNNNNNCGW 4 cut(s) 127, 136, 261, 474
PfeI GAWTC 1 cut(s) 377
Pfl23II CGTACG 4 cut(s) 51, 118, 185, 252
PfoI TCCNGGA 1 cut(s) 410
PkrI GCNGC 1 cut(s) 598
PleI GAGTC 1 cut(s) 297
PpsI GAGTC 1 cut(s) 297
Ppu21I YACGTR 1 cut(s) 346
PpuMI RGGWCCY 1 cut(s) 515
Psp5II RGGWCCY 1 cut(s) 515
Psp6I CCWGG 6 cut(s) 21, 109, 222, 410, 517, 580
PspGI CCWGG 6 cut(s) 21, 109, 222, 410, 517, 580
PspLI CGTACG 4 cut(s) 51, 118, 185, 252
PspN4I GGNNCC 6 cut(s) 48, 115, 182, 249, 357, 537
PspPI GGNCC 2 cut(s) 355, 515
PspPPI RGGWCCY 1 cut(s) 515
PsuI RGATCY 5 cut(s) 18, 85, 152, 219, 535
RsaI GTAC 5 cut(s) 53, 120, 187, 254, 350
RsaNI GTAC 5 cut(s) 52, 119, 186, 253, 349
RseI CAYNNNNRTG 3 cut(s) 63, 548, 613
SatI GCNGC 1 cut(s) 597
Sau3AI GATC 7 cut(s) 18, 85, 152, 219, 283, 535, 634
Sau96I GGNCC 2 cut(s) 355, 515
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 7 cut(s) 23, 111, 224, 353, 412, 519, 582
SduI GDGCHC 2 cut(s) 589, 622
SfuI TTCGAA 1 cut(s) 659
SinI GGWCC 2 cut(s) 355, 515
SmiMI CAYNNNNRTG 3 cut(s) 63, 548, 613
SmlI CTYRAG 2 cut(s) 500, 563
SmoI CTYRAG 2 cut(s) 500, 563
Sse9I AATT 4 cut(s) 360, 368, 491, 655
SsiI CCGC 1 cut(s) 325
StyD4I CCNGG 7 cut(s) 21, 109, 222, 351, 410, 517, 580
TaaI ACNGT 5 cut(s) 10, 77, 144, 275, 612
TaiI ACGT 2 cut(s) 348, 471
TaqI TCGA 4 cut(s) 130, 232, 264, 659
TaqII GACCGA 3 cut(s) 29, 88, 230
TasI AATT 4 cut(s) 360, 368, 491, 655
TfiI GAWTC 1 cut(s) 377
TscAI CASTG 3 cut(s) 82, 550, 615
TseI GCWGC 1 cut(s) 596
TspGWI ACGGA 4 cut(s) 39, 106, 173, 240
TspRI CASTG 3 cut(s) 82, 550, 615
VpaK11BI GGWCC 2 cut(s) 355, 515
XapI RAATTY 3 cut(s) 368, 491, 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.