Rh4AG413000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0016321
Physical Location & Seq
Reverse (-)
71193752 .. 71194832
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG413000.1

Sequence Viewer

Length: 330 bp
ATGAGAACTTGGGGAGATGATGTGGCCGATGCATTACTGTTGCCATATCCAAGATTCATGGCAATTGTTATAAGAACAATTCAAATTCTGCATCGAGAGAATTTGAGTTCTGACTCGCTCAACATAGCCAAGCTTGTAAAGATCAGGTTTGAGAAGAAAGAGTATGGAGGACCTGGAACATTGTTGGTGGATCCCTTCACTGATATGTTAGTTGCTCTCAAGGAGAAGGAACTACCTGGAGCACCTTTGGCTGCAAGGGCAACACTGTTATGGGCTCAAAACTATTTGGATCAAGACTGGGATGTTTGGAATTCGAAATCGTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.4

Weight (kDa)

6.57

Isoelectric Point (pI)

23.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g34960
malus_domestica MD13G1087300.v1.1 MD16G1087800.v1.1
prunus_persica Prupe.1G258900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0444421
rosa_laevigata RLG00000005831
rosa_roxburghii Rroxscaffold_5G00384950
rosa_rugosa Rorug04G0353000
rosa_samantha Rh4AG413000 Rh4AG413100 Rh4BG424500 Rh4BG424600 Rh4CG438900 Rh4DG419900
rosa_wichuraiana Rw4G035480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 71
AclWI GGATC 3 cut(s) 185, 198, 297
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 3 cut(s) 84, 100, 310
AgsI TTSAA 1 cut(s) 83
AjnI CCWGG 2 cut(s) 172, 235
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 244
AlwI GGATC 3 cut(s) 185, 198, 297
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 3 cut(s) 84, 100, 310
AspS9I GGNCC 1 cut(s) 170
AsuII TTCGAA 1 cut(s) 314
AvaII GGWCC 1 cut(s) 170
BamHI GGATCC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 238
BciT130I CCWGG 2 cut(s) 174, 237
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 2 cut(s) 174, 237
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 2 cut(s) 174, 237
BmrI ACTGGG 1 cut(s) 307
BmsI GCATC 2 cut(s) 19, 100
BmuI ACTGGG 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 258
Bpu14I TTCGAA 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bse1I ACTGG 1 cut(s) 302
BseBI CCWGG 2 cut(s) 174, 237
BseGI GGATG 1 cut(s) 307
BseNI ACTGG 1 cut(s) 302
BseXI GCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 244
BsnI GGCC 1 cut(s) 26
Bsp119I TTCGAA 1 cut(s) 314
Bsp1286I GDGCHC 2 cut(s) 244, 277
Bsp143I GATC 3 cut(s) 141, 190, 289
BspANI GGCC 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 3 cut(s) 185, 198, 297
BspT104I TTCGAA 1 cut(s) 314
BsrI ACTGG 1 cut(s) 302
BssMI GATC 3 cut(s) 141, 190, 289
Bst2UI CCWGG 2 cut(s) 174, 237
Bst4CI ACNGT 2 cut(s) 39, 267
BstBI TTCGAA 1 cut(s) 314
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 3 cut(s) 144, 193, 292
BstMBI GATC 3 cut(s) 141, 190, 289
BstMWI GCNNNNNNNGC 2 cut(s) 248, 257
BstNI CCWGG 2 cut(s) 174, 237
BstSCI CCNGG 2 cut(s) 172, 235
BstV1I GCAGC 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 2 cut(s) 198, 263
Cfr13I GGNCC 1 cut(s) 170
CviAII CATG 1 cut(s) 58
CviJI RGCY 5 cut(s) 26, 128, 133, 251, 275
CviKI_1 RGCY 5 cut(s) 26, 128, 133, 251, 275
DpnI GATC 3 cut(s) 143, 192, 291
DpnII GATC 3 cut(s) 141, 190, 289
EaeI YGGCCR 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 310
EcoRII CCWGG 2 cut(s) 172, 235
EcoT22I ATGCAT 1 cut(s) 34
EcoT38I GRGCYC 1 cut(s) 277
FaeI CATG 1 cut(s) 61
FaiI YATR 7 cut(s) 46, 59, 71, 125, 165, 206, 271
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 1 cut(s) 26
Hin1II CATG 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 2 cut(s) 54, 113
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 2 cut(s) 95, 293
HpyAV CCTTC 2 cut(s) 205, 220
HpyCH4III ACNGT 2 cut(s) 39, 267
HpyCH4V TGCA 3 cut(s) 32, 91, 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 257
Hsp92II CATG 1 cut(s) 61
Kzo9I GATC 3 cut(s) 141, 190, 289
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 6 cut(s) 130, 159, 186, 222, 249, 283
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 2 cut(s) 19, 100
MalI GATC 3 cut(s) 143, 192, 291
MboI GATC 3 cut(s) 141, 190, 289
MboII GAAGA 1 cut(s) 166
MfeI CAATTG 1 cut(s) 63
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 2 cut(s) 244, 277
MluCI AATT 5 cut(s) 63, 78, 84, 100, 310
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 1 cut(s) 161
Mph1103I ATGCAT 1 cut(s) 34
MslI CAYNNNNRTG 2 cut(s) 203, 268
MspR9I CCNGG 2 cut(s) 174, 237
MunI CAATTG 1 cut(s) 63
MvaI CCWGG 2 cut(s) 174, 237
MwoI GCNNNNNNNGC 2 cut(s) 248, 257
NdeII GATC 3 cut(s) 141, 190, 289
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 1 cut(s) 192
NsiI ATGCAT 1 cut(s) 34
NspV TTCGAA 1 cut(s) 314
PfeI GAWTC 1 cut(s) 54
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PpuMI RGGWCCY 1 cut(s) 170
PsiI TTATAA 1 cut(s) 71
Psp5II RGGWCCY 1 cut(s) 170
Psp6I CCWGG 2 cut(s) 172, 235
PspGI CCWGG 2 cut(s) 172, 235
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 170
PspPPI RGGWCCY 1 cut(s) 170
PsuI RGATCY 1 cut(s) 190
RseI CAYNNNNRTG 2 cut(s) 203, 268
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 3 cut(s) 141, 190, 289
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 2 cut(s) 174, 237
SduI GDGCHC 2 cut(s) 244, 277
SetI ASST 5 cut(s) 135, 149, 175, 238, 247
SfaNI GCATC 2 cut(s) 19, 100
SfuI TTCGAA 1 cut(s) 314
SinI GGWCC 1 cut(s) 170
SmiMI CAYNNNNRTG 2 cut(s) 203, 268
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 5 cut(s) 63, 78, 84, 100, 310
StyD4I CCNGG 2 cut(s) 172, 235
TaaI ACNGT 2 cut(s) 39, 267
TaqI TCGA 2 cut(s) 94, 314
TasI AATT 5 cut(s) 63, 78, 84, 100, 310
TfiI GAWTC 1 cut(s) 54
TscAI CASTG 2 cut(s) 205, 270
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 1 cut(s) 46
TspRI CASTG 2 cut(s) 205, 270
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 3 cut(s) 84, 100, 310
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.