Rh4DG419900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0016321
Physical Location & Seq
Reverse (-)
62809851 .. 62811800
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG419900.1

Sequence Viewer

Length: 507 bp
ATGGCATTGCACCGCTCCTGTGGGCCTCTCATTTCGAGCCCATTACCGACTCCCGCCACAACTCCAACCTCGACCATTCTCATTCATTCATGCCCGCCAACTGTTTGTATTAATGCCAGAGTCAGAAACACCACCACAAAGCCACTAAGAGCCACCGCCAGCACACCCCAGAAATACGTGTACCCGGACCCAATTCCGGAATTTGCAGAATCCGAGACCCACAAGTTCAGAGCTGAGCTTTCCAGGAAGCTATTGAAGTACAAGGCGACTTTTGGGGATGACTTCAGTAGTGTCATTGACGTATGCGCCGAGATATTTAGTGAATTCTTGCTCAAGGAGTATGGAGGACCTGGAACATTGTTGGTGGATCCCTTCACTGATATGTTAGTTGCTCTCAAGGAGAAGGAACTACCTGGAGCACCTTTGGCTGCAAGGGCAACACTGTTATGGGCTCAAAACTATTTGGATCAAGACAGGGATGTTTGGAATTCGAAATCGTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.56

Weight (kDa)

7.66

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g34960
malus_domestica MD13G1087300.v1.1 MD16G1087800.v1.1
prunus_persica Prupe.1G258900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0444421
rosa_laevigata RLG00000005831
rosa_roxburghii Rroxscaffold_5G00384950
rosa_rugosa Rorug04G0353000
rosa_samantha Rh4AG413000 Rh4AG413100 Rh4BG424500 Rh4BG424600 Rh4CG438900 Rh4DG419900
rosa_wichuraiana Rw4G035480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 15
AccIII TCCGGA 1 cut(s) 196
AciI CCGC 4 cut(s) 13, 54, 95, 156
AclWI GGATC 3 cut(s) 362, 375, 474
AcsI RAATTY 3 cut(s) 200, 323, 487
AcuI CTGAAG 1 cut(s) 268
AfaI GTAC 2 cut(s) 182, 260
AfiI CCNNNNNNNGG 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 1 cut(s) 256
AjnI CCWGG 3 cut(s) 242, 349, 412
AluBI AGCT 3 cut(s) 233, 238, 250
AluI AGCT 3 cut(s) 233, 238, 250
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 3 cut(s) 362, 375, 474
Aor13HI TCCGGA 1 cut(s) 196
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 428
ApoI RAATTY 3 cut(s) 200, 323, 487
AseI ATTAAT 1 cut(s) 111
AspLEI GCGC 1 cut(s) 308
AspS9I GGNCC 3 cut(s) 23, 187, 347
AsuC2I CCSGG 1 cut(s) 185
AsuII TTCGAA 1 cut(s) 491
AvaII GGWCC 2 cut(s) 187, 347
BamHI GGATCC 1 cut(s) 367
BanII GRGCYC 2 cut(s) 41, 454
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 1 cut(s) 415
BciT130I CCWGG 3 cut(s) 244, 351, 414
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 209
BisI GCNGC 1 cut(s) 429
BlpI GCTNAGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 430
Bme1390I CCNGG 4 cut(s) 185, 244, 351, 414
Bme18I GGWCC 2 cut(s) 187, 347
BmgT120I GGNCC 3 cut(s) 23, 187, 347
BmiI GGNNCC 2 cut(s) 189, 369
BmrFI CCNGG 4 cut(s) 185, 244, 351, 414
BpmI CTGGAG 1 cut(s) 435
Bpu1102I GCTNAGC 1 cut(s) 234
Bpu14I TTCGAA 1 cut(s) 491
BpuEI CTTGAG 2 cut(s) 317, 380
BpuMI CCSGG 1 cut(s) 185
BsaAI YACGTR 1 cut(s) 178
BsaI GGTCTC 1 cut(s) 209
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 5
BseAI TCCGGA 1 cut(s) 196
BseBI CCWGG 3 cut(s) 244, 351, 414
BseGI GGATG 2 cut(s) 283, 484
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 5
BseMII CTCAG 1 cut(s) 225
BseXI GCAGC 1 cut(s) 415
BshFI GGCC 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 2 cut(s) 185, 197
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 209
BsnI GGCC 1 cut(s) 25
Bso31I GGTCTC 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 491
Bsp1286I GDGCHC 3 cut(s) 41, 421, 454
Bsp13I TCCGGA 1 cut(s) 196
Bsp143I GATC 2 cut(s) 367, 466
Bsp1720I GCTNAGC 1 cut(s) 234
BspACI CCGC 4 cut(s) 13, 54, 95, 156
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 226
BspEI TCCGGA 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 189, 369
BspPI GGATC 3 cut(s) 362, 375, 474
BspT104I TTCGAA 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 209
BsrBI CCGCTC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 5
BssMI GATC 2 cut(s) 367, 466
Bst2UI CCWGG 3 cut(s) 244, 351, 414
Bst4CI ACNGT 2 cut(s) 103, 444
BstBAI YACGTR 1 cut(s) 178
BstBI TTCGAA 1 cut(s) 491
BstC8I GCNNGC 2 cut(s) 95, 160
BstDEI CTNAG 2 cut(s) 146, 234
BstF5I GGATG 2 cut(s) 283, 484
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 2 cut(s) 370, 469
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 2 cut(s) 367, 466
BstMWI GCNNNNNNNGC 2 cut(s) 425, 434
BstNI CCWGG 3 cut(s) 244, 351, 414
BstSCI CCNGG 4 cut(s) 183, 242, 349, 412
BstV1I GCAGC 1 cut(s) 415
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 1 cut(s) 25
BtsCI GGATG 2 cut(s) 283, 484
BtsIMutI CAGTG 2 cut(s) 375, 440
Cac8I GCNNGC 2 cut(s) 95, 160
CfoI GCGC 1 cut(s) 308
Cfr13I GGNCC 3 cut(s) 23, 187, 347
Csp6I GTAC 2 cut(s) 181, 259
CviAII CATG 1 cut(s) 90
CviJI RGCY 9 cut(s) 25, 39, 142, 152, 233, 238, 250, 428, 452
CviKI_1 RGCY 9 cut(s) 25, 39, 142, 152, 233, 238, 250, 428, 452
CviQI GTAC 2 cut(s) 181, 259
DdeI CTNAG 2 cut(s) 146, 234
DpnI GATC 2 cut(s) 369, 468
DpnII GATC 2 cut(s) 367, 466
Eco24I GRGCYC 2 cut(s) 41, 454
Eco31I GGTCTC 1 cut(s) 209
Eco47I GGWCC 2 cut(s) 187, 347
Eco57I CTGAAG 1 cut(s) 268
EcoO109I RGGNCCY 1 cut(s) 347
EcoRI GAATTC 2 cut(s) 323, 487
EcoRII CCWGG 3 cut(s) 242, 349, 412
EcoT38I GRGCYC 2 cut(s) 41, 454
FaeI CATG 1 cut(s) 93
FaiI YATR 5 cut(s) 91, 304, 342, 383, 448
FatI CATG 1 cut(s) 89
FauI CCCGC 2 cut(s) 61, 102
Fnu4HI GCNGC 1 cut(s) 429
FokI GGATG 2 cut(s) 290, 491
FriOI GRGCYC 2 cut(s) 41, 454
Fsp4HI GCNGC 1 cut(s) 429
GlaI GCGC 1 cut(s) 307
GluI GCNGC 1 cut(s) 429
GsuI CTGGAG 1 cut(s) 435
HaeIII GGCC 1 cut(s) 25
HapII CCGG 2 cut(s) 185, 197
HhaI GCGC 1 cut(s) 308
Hin1II CATG 1 cut(s) 93
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HinfI GANTC 3 cut(s) 49, 120, 209
HpaII CCGG 2 cut(s) 185, 197
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 3 cut(s) 125, 214, 230
Hpy188III TCNNGA 2 cut(s) 197, 470
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 2 cut(s) 382, 397
HpyCH4III ACNGT 2 cut(s) 103, 444
HpyCH4IV ACGT 2 cut(s) 177, 300
HpyCH4V TGCA 3 cut(s) 10, 206, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 425, 434
HpyF3I CTNAG 2 cut(s) 146, 234
HpySE526I ACGT 2 cut(s) 177, 300
Hsp92II CATG 1 cut(s) 93
HspAI GCGC 1 cut(s) 306
Kpn2I TCCGGA 1 cut(s) 196
Kzo9I GATC 2 cut(s) 367, 466
LmnI GCTCC 2 cut(s) 20, 416
Lsp1109I GCAGC 1 cut(s) 415
MaeII ACGT 2 cut(s) 177, 300
MalI GATC 2 cut(s) 369, 468
MbiI CCGCTC 1 cut(s) 15
MboI GATC 2 cut(s) 367, 466
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 3 cut(s) 41, 421, 454
MluCI AATT 4 cut(s) 192, 200, 323, 487
MlyI GAGTC 2 cut(s) 43, 129
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 3 cut(s) 36, 79, 338
MroI TCCGGA 1 cut(s) 196
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 2 cut(s) 380, 445
MspI CCGG 2 cut(s) 185, 197
MspR9I CCNGG 4 cut(s) 185, 244, 351, 414
MvaI CCWGG 3 cut(s) 244, 351, 414
MwoI GCNNNNNNNGC 2 cut(s) 425, 434
NciI CCSGG 1 cut(s) 185
NdeII GATC 2 cut(s) 367, 466
NlaIII CATG 1 cut(s) 93
NlaIV GGNNCC 2 cut(s) 189, 369
NmeAIII GCCGAG 1 cut(s) 334
NspV TTCGAA 1 cut(s) 491
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PfeI GAWTC 1 cut(s) 209
PfoI TCCNGGA 1 cut(s) 242
PkrI GCNGC 1 cut(s) 430
PleI GAGTC 2 cut(s) 43, 128
PpsI GAGTC 2 cut(s) 43, 128
Ppu21I YACGTR 1 cut(s) 178
PpuMI RGGWCCY 1 cut(s) 347
PshBI ATTAAT 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 347
Psp6I CCWGG 3 cut(s) 242, 349, 412
PspGI CCWGG 3 cut(s) 242, 349, 412
PspN4I GGNNCC 2 cut(s) 189, 369
PspPI GGNCC 3 cut(s) 23, 187, 347
PspPPI RGGWCCY 1 cut(s) 347
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 2 cut(s) 182, 260
RsaNI GTAC 2 cut(s) 181, 259
RseI CAYNNNNRTG 2 cut(s) 380, 445
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 1 cut(s) 429
Sau3AI GATC 2 cut(s) 367, 466
Sau96I GGNCC 3 cut(s) 23, 187, 347
SchI GAGTC 2 cut(s) 43, 129
ScrFI CCNGG 4 cut(s) 185, 244, 351, 414
SduI GDGCHC 3 cut(s) 41, 421, 454
SetI ASST 9 cut(s) 71, 180, 235, 240, 252, 303, 352, 415, 424
SfuI TTCGAA 1 cut(s) 491
SinI GGWCC 2 cut(s) 187, 347
SmiMI CAYNNNNRTG 2 cut(s) 380, 445
SmlI CTYRAG 2 cut(s) 332, 395
SmoI CTYRAG 2 cut(s) 332, 395
Sse9I AATT 4 cut(s) 192, 200, 323, 487
SsiI CCGC 4 cut(s) 13, 54, 95, 156
StyD4I CCNGG 4 cut(s) 183, 242, 349, 412
TaaI ACNGT 2 cut(s) 103, 444
TaiI ACGT 2 cut(s) 180, 303
TaqI TCGA 3 cut(s) 35, 71, 491
TasI AATT 4 cut(s) 192, 200, 323, 487
TatI WGTACW 1 cut(s) 258
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 2 cut(s) 382, 447
TseI GCWGC 1 cut(s) 428
TspDTI ATGAA 2 cut(s) 74, 78
TspRI CASTG 2 cut(s) 382, 447
VpaK11BI GGWCC 2 cut(s) 187, 347
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 3 cut(s) 200, 323, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.