RLG00000005831

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0016321
Physical Location & Seq
Forward (+)
2211244 .. 2213796
2553 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005831

Sequence Viewer

Length: 813 bp
ATGCATCTATGTAGTTGGCTGCAGACGTTCGCCAAGGGGATCACTTTATCGCGGCGCAGTCGTCGGTACGTCCTTTATCATGTGCCTGATCGTCTGCGATTTAAGGGCCAGTACCGCCTCTTCAATATCGAAAGTCTCTCCATCGGAGGTCCTGAGGTCAAGGATATGTTTGAGATCGAGTTCGGGAGAGATATATTTGATGAGTTAGGAATTGAAAAGCTAATGCAAGAGGGATTCACAACACTGCTGGGTGACCGATGCGTGCATGCACCGTGGGAGCGCGCGCGTGACCCAGCCACCGTACCAATGGCACTGCACCGCTCCTGTGGGCCTCTCATTTCGAGCCCATCACCAACTCCCGCCACAACTCCAACCTCGACCATTCTGATTCATTCATGCCCGCCAGCTGTTTGTATTAATGCCAAAGTCAGAAACACCACCACAAAGCCACTAAGAGCCACCGCCAGCACACCCCAGAAATACGTGTACCCGGACCCAATTCCGGAATTTGCAGAATCCGAGACCCACAAGTTCAGAGCTGAGCTTTCCGGGAAGCTATTGAAGGACAAGGCGACTTTTGGGGATGACTTCAGTAGTGTCATTGACGTATGCGCCGAGATATTTAGTGCATTCTTGCTCAAGGAGTATGGAGGACCTGGAACATTGTTGGTGGATCCCTTCACTGATATGTTAGTTGCTCTCAAGGAGAAGGAACTACCTGGAGCACCTTTGGCTGCAAGGGCAACACTGTTATGGGCTCAAAACTATTTGGATCAAGACTGGGATGTTTGGAATTCGAAATCGTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

30.24

Weight (kDa)

7.0

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g34960
malus_domestica MD13G1087300.v1.1 MD16G1087800.v1.1
prunus_persica Prupe.1G258900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0444421
rosa_laevigata RLG00000005831
rosa_roxburghii Rroxscaffold_5G00384950
rosa_rugosa Rorug04G0353000
rosa_samantha Rh4AG413000 Rh4AG413100 Rh4BG424500 Rh4BG424600 Rh4CG438900 Rh4DG419900
rosa_wichuraiana Rw4G035480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 321
AccII CGCG 4 cut(s) 52, 282, 284, 286
AccIII TCCGGA 1 cut(s) 502
AciI CCGC 6 cut(s) 52, 115, 319, 360, 401, 462
AclWI GGATC 4 cut(s) 47, 668, 681, 780
AcsI RAATTY 2 cut(s) 506, 793
AcuI CTGAAG 1 cut(s) 574
AfaI GTAC 4 cut(s) 68, 113, 303, 488
AfiI CCNNNNNNNGG 1 cut(s) 502
AflIII ACRYGT 1 cut(s) 483
AgsI TTSAA 3 cut(s) 124, 215, 562
AjnI CCWGG 2 cut(s) 655, 718
AluBI AGCT 5 cut(s) 220, 407, 539, 544, 556
AluI AGCT 5 cut(s) 220, 407, 539, 544, 556
Alw21I GWGCWC 1 cut(s) 727
Alw26I GTCTC 2 cut(s) 140, 515
AlwI GGATC 4 cut(s) 47, 668, 681, 780
Aor13HI TCCGGA 1 cut(s) 502
AoxI GGCC 2 cut(s) 106, 329
ApeKI GCWGC 2 cut(s) 19, 734
ApoI RAATTY 2 cut(s) 506, 793
AseI ATTAAT 1 cut(s) 417
AspLEI GCGC 5 cut(s) 57, 282, 284, 286, 614
AspS9I GGNCC 5 cut(s) 106, 149, 329, 493, 653
AsuC2I CCSGG 2 cut(s) 491, 550
AsuHPI GGTGA 2 cut(s) 263, 342
AsuII TTCGAA 1 cut(s) 797
AvaII GGWCC 3 cut(s) 149, 493, 653
AxyI CCTNAGG 1 cut(s) 153
BamHI GGATCC 1 cut(s) 673
BanII GRGCYC 2 cut(s) 347, 760
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
Bbv12I GWGCWC 1 cut(s) 727
BbvI GCAGC 2 cut(s) 6, 721
BccI CCATC 2 cut(s) 149, 355
BciT130I CCWGG 2 cut(s) 657, 720
BcnI CCSGG 2 cut(s) 491, 550
BcoDI GTCTC 2 cut(s) 140, 515
BfmI CTRYAG 1 cut(s) 20
BisI GCNGC 3 cut(s) 20, 53, 735
BlpI GCTNAGC 1 cut(s) 540
BlsI GCNGC 3 cut(s) 21, 54, 736
Bme1390I CCNGG 4 cut(s) 491, 550, 657, 720
Bme18I GGWCC 3 cut(s) 149, 493, 653
BmgT120I GGNCC 5 cut(s) 106, 149, 329, 493, 653
BmiI GGNNCC 2 cut(s) 495, 675
BmrFI CCNGG 4 cut(s) 491, 550, 657, 720
BmrI ACTGGG 1 cut(s) 790
BmsI GCATC 2 cut(s) 13, 248
BmuI ACTGGG 1 cut(s) 790
BpmI CTGGAG 1 cut(s) 741
Bpu1102I GCTNAGC 1 cut(s) 540
Bpu14I TTCGAA 1 cut(s) 797
BpuEI CTTGAG 2 cut(s) 623, 686
BpuMI CCSGG 2 cut(s) 491, 550
BsaAI YACGTR 1 cut(s) 484
BsaI GGTCTC 1 cut(s) 515
BsaJI CCNNGG 2 cut(s) 33, 272
BsaWI WCCGGW 1 cut(s) 502
Bsc4I CCNNNNNNNGG 1 cut(s) 502
Bse1I ACTGG 2 cut(s) 109, 785
Bse21I CCTNAGG 1 cut(s) 153
BseAI TCCGGA 1 cut(s) 502
BseBI CCWGG 2 cut(s) 657, 720
BseDI CCNNGG 2 cut(s) 33, 272
BseGI GGATG 2 cut(s) 589, 790
BseLI CCNNNNNNNGG 1 cut(s) 502
BseMII CTCAG 2 cut(s) 144, 531
BseNI ACTGG 2 cut(s) 109, 785
BsePI GCGCGC 2 cut(s) 280, 282
BseXI GCAGC 2 cut(s) 6, 721
BseYI CCCAGC 2 cut(s) 247, 292
BsgI GTGCAG 1 cut(s) 299
Bsh1236I CGCG 4 cut(s) 52, 282, 284, 286
BshFI GGCC 2 cut(s) 108, 331
BsiHKAI GWGCWC 1 cut(s) 727
BsiSI CCGG 3 cut(s) 491, 503, 549
BslI CCNNNNNNNGG 1 cut(s) 502
BsmAI GTCTC 2 cut(s) 140, 515
BsmI GAATGC 1 cut(s) 629
BsnI GGCC 2 cut(s) 108, 331
Bso31I GGTCTC 1 cut(s) 515
Bsp119I TTCGAA 1 cut(s) 797
Bsp1286I GDGCHC 3 cut(s) 347, 727, 760
Bsp13I TCCGGA 1 cut(s) 502
Bsp143I GATC 5 cut(s) 39, 88, 174, 673, 772
Bsp1720I GCTNAGC 1 cut(s) 540
BspACI CCGC 6 cut(s) 52, 115, 319, 360, 401, 462
BspANI GGCC 2 cut(s) 108, 331
BspCNI CTCAG 2 cut(s) 145, 532
BspEI TCCGGA 1 cut(s) 502
BspFNI CGCG 4 cut(s) 52, 282, 284, 286
BspLI GGNNCC 2 cut(s) 495, 675
BspMAI CTGCAG 1 cut(s) 24
BspPI GGATC 4 cut(s) 47, 668, 681, 780
BspT104I TTCGAA 1 cut(s) 797
BspTNI GGTCTC 1 cut(s) 515
BsrBI CCGCTC 1 cut(s) 321
BsrI ACTGG 2 cut(s) 109, 785
BssECI CCNNGG 2 cut(s) 33, 272
BssHII GCGCGC 2 cut(s) 280, 282
BssMI GATC 5 cut(s) 39, 88, 174, 673, 772
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 657, 720
Bst4CI ACNGT 3 cut(s) 273, 301, 750
Bst6I CTCTTC 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 484
BstBI TTCGAA 1 cut(s) 797
BstC8I GCNNGC 7 cut(s) 263, 267, 282, 284, 401, 405, 466
BstDEI CTNAG 3 cut(s) 153, 452, 540
BstDSI CCRYGG 1 cut(s) 272
BstEII GGTNACC 1 cut(s) 251
BstF5I GGATG 2 cut(s) 589, 790
BstFNI CGCG 4 cut(s) 52, 282, 284, 286
BstHHI GCGC 5 cut(s) 57, 282, 284, 286, 614
BstKTI GATC 5 cut(s) 42, 91, 177, 676, 775
BstMAI GTCTC 2 cut(s) 140, 515
BstMBI GATC 5 cut(s) 39, 88, 174, 673, 772
BstMWI GCNNNNNNNGC 3 cut(s) 114, 731, 740
BstNI CCWGG 2 cut(s) 657, 720
BstNSI RCATGY 1 cut(s) 269
BstPI GGTNACC 1 cut(s) 251
BstSCI CCNGG 4 cut(s) 489, 548, 655, 718
BstSFI CTRYAG 1 cut(s) 20
BstUI CGCG 4 cut(s) 52, 282, 284, 286
BstV1I GCAGC 2 cut(s) 6, 721
BstX2I RGATCY 1 cut(s) 673
BstYI RGATCY 1 cut(s) 673
Bsu36I CCTNAGG 1 cut(s) 153
BsuRI GGCC 2 cut(s) 108, 331
BtgI CCRYGG 1 cut(s) 272
BtsCI GGATG 2 cut(s) 589, 790
BtsI GCAGTG 2 cut(s) 242, 311
BtsIMutI CAGTG 4 cut(s) 242, 311, 681, 746
Cac8I GCNNGC 7 cut(s) 263, 267, 282, 284, 401, 405, 466
CfoI GCGC 5 cut(s) 57, 282, 284, 286, 614
Cfr13I GGNCC 5 cut(s) 106, 149, 329, 493, 653
Csp6I GTAC 4 cut(s) 67, 112, 302, 487
CviAII CATG 3 cut(s) 80, 266, 396
CviQI GTAC 4 cut(s) 67, 112, 302, 487
DdeI CTNAG 3 cut(s) 153, 452, 540
DpnI GATC 5 cut(s) 41, 90, 176, 675, 774
DpnII GATC 5 cut(s) 39, 88, 174, 673, 772
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 33
Eco24I GRGCYC 2 cut(s) 347, 760
Eco31I GGTCTC 1 cut(s) 515
Eco47I GGWCC 3 cut(s) 149, 493, 653
Eco57I CTGAAG 1 cut(s) 574
Eco81I CCTNAGG 1 cut(s) 153
Eco91I GGTNACC 1 cut(s) 251
EcoO109I RGGNCCY 2 cut(s) 149, 653
EcoO65I GGTNACC 1 cut(s) 251
EcoRI GAATTC 1 cut(s) 793
EcoRII CCWGG 2 cut(s) 655, 718
EcoT14I CCWWGG 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 347, 760
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 3 cut(s) 83, 269, 399
FatI CATG 3 cut(s) 79, 265, 395
FauI CCCGC 2 cut(s) 367, 408
Fnu4HI GCNGC 3 cut(s) 20, 53, 735
FokI GGATG 2 cut(s) 596, 797
FriOI GRGCYC 2 cut(s) 347, 760
Fsp4HI GCNGC 3 cut(s) 20, 53, 735
GlaI GCGC 5 cut(s) 56, 281, 283, 285, 613
GluI GCNGC 3 cut(s) 20, 53, 735
GsaI CCCAGC 2 cut(s) 251, 296
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 2 cut(s) 108, 331
HapII CCGG 3 cut(s) 491, 503, 549
HhaI GCGC 5 cut(s) 57, 282, 284, 286, 614
Hin1II CATG 3 cut(s) 83, 269, 399
Hin6I GCGC 5 cut(s) 55, 280, 282, 284, 612
HinP1I GCGC 5 cut(s) 55, 280, 282, 284, 612
HinfI GANTC 3 cut(s) 234, 388, 515
HpaII CCGG 3 cut(s) 491, 503, 549
HphI GGTGA 2 cut(s) 263, 342
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 5 cut(s) 146, 387, 431, 520, 536
Hpy188III TCNNGA 4 cut(s) 152, 184, 503, 776
Hpy8I GTNNAC 1 cut(s) 487
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 3 cut(s) 556, 688, 703
HpyCH4III ACNGT 3 cut(s) 273, 301, 750
HpyCH4IV ACGT 4 cut(s) 26, 69, 483, 606
HpyCH4V TGCA 9 cut(s) 4, 22, 226, 265, 269, 316, 512, 629, 737
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 731, 740
HpyF3I CTNAG 3 cut(s) 153, 452, 540
HpySE526I ACGT 4 cut(s) 26, 69, 483, 606
Hsp92II CATG 3 cut(s) 83, 269, 399
HspAI GCGC 5 cut(s) 55, 280, 282, 284, 612
Kpn2I TCCGGA 1 cut(s) 502
Kzo9I GATC 5 cut(s) 39, 88, 174, 673, 772
LmnI GCTCC 3 cut(s) 277, 326, 722
Lsp1109I GCAGC 2 cut(s) 6, 721
LweI GCATC 2 cut(s) 13, 248
MaeII ACGT 4 cut(s) 26, 69, 483, 606
MaeIII GTNAC 2 cut(s) 251, 287
MalI GATC 5 cut(s) 41, 90, 176, 675, 774
MauBI CGCGCGCG 1 cut(s) 282
MbiI CCGCTC 1 cut(s) 321
MboI GATC 5 cut(s) 39, 88, 174, 673, 772
MboII GAAGA 1 cut(s) 112
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 3 cut(s) 347, 727, 760
MluCI AATT 4 cut(s) 210, 498, 506, 793
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 7 cut(s) 128, 140, 148, 223, 342, 385, 644
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 502
MseI TTAA 2 cut(s) 102, 417
MslI CAYNNNNRTG 2 cut(s) 686, 751
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 3 cut(s) 491, 503, 549
MspR9I CCNGG 4 cut(s) 491, 550, 657, 720
Mva1269I GAATGC 1 cut(s) 629
MvaI CCWGG 2 cut(s) 657, 720
MvnI CGCG 4 cut(s) 52, 282, 284, 286
MwoI GCNNNNNNNGC 3 cut(s) 114, 731, 740
NciI CCSGG 2 cut(s) 491, 550
NdeII GATC 5 cut(s) 39, 88, 174, 673, 772
NlaIII CATG 3 cut(s) 83, 269, 399
NlaIV GGNNCC 2 cut(s) 495, 675
NmeAIII GCCGAG 1 cut(s) 640
NmuCI GTSAC 2 cut(s) 251, 287
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 269
NspV TTCGAA 1 cut(s) 797
PaeI GCATGC 1 cut(s) 269
PauI GCGCGC 2 cut(s) 280, 282
PcsI WCGNNNNNNNCGW 1 cut(s) 612
PctI GAATGC 1 cut(s) 629
PfeI GAWTC 3 cut(s) 234, 388, 515
PfoI TCCNGGA 1 cut(s) 548
PkrI GCNGC 3 cut(s) 21, 54, 736
Ppu21I YACGTR 1 cut(s) 484
PpuMI RGGWCCY 2 cut(s) 149, 653
PshBI ATTAAT 1 cut(s) 417
Psp5II RGGWCCY 2 cut(s) 149, 653
Psp6I CCWGG 2 cut(s) 655, 718
PspEI GGTNACC 1 cut(s) 251
PspFI CCCAGC 2 cut(s) 247, 292
PspGI CCWGG 2 cut(s) 655, 718
PspN4I GGNNCC 2 cut(s) 495, 675
PspPI GGNCC 5 cut(s) 106, 149, 329, 493, 653
PspPPI RGGWCCY 2 cut(s) 149, 653
PstI CTGCAG 1 cut(s) 24
PsuI RGATCY 1 cut(s) 673
PteI GCGCGC 2 cut(s) 280, 282
PvuII CAGCTG 1 cut(s) 407
RsaI GTAC 4 cut(s) 68, 113, 303, 488
RsaNI GTAC 4 cut(s) 67, 112, 302, 487
RseI CAYNNNNRTG 2 cut(s) 686, 751
SaqAI TTAA 2 cut(s) 102, 417
SatI GCNGC 3 cut(s) 20, 53, 735
Sau3AI GATC 5 cut(s) 39, 88, 174, 673, 772
Sau96I GGNCC 5 cut(s) 106, 149, 329, 493, 653
ScrFI CCNGG 4 cut(s) 491, 550, 657, 720
SduI GDGCHC 3 cut(s) 347, 727, 760
SfaNI GCATC 2 cut(s) 13, 248
SfcI CTRYAG 1 cut(s) 20
SfuI TTCGAA 1 cut(s) 797
SinI GGWCC 3 cut(s) 149, 493, 653
SmiMI CAYNNNNRTG 2 cut(s) 686, 751
SmlI CTYRAG 2 cut(s) 638, 701
SmoI CTYRAG 2 cut(s) 638, 701
SphI GCATGC 1 cut(s) 269
Sse9I AATT 4 cut(s) 210, 498, 506, 793
SsiI CCGC 6 cut(s) 52, 115, 319, 360, 401, 462
StyD4I CCNGG 4 cut(s) 489, 548, 655, 718
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 3 cut(s) 273, 301, 750
TaiI ACGT 4 cut(s) 29, 72, 486, 609
TaqI TCGA 5 cut(s) 129, 177, 341, 377, 797
TaqII GACCGA 1 cut(s) 270
TasI AATT 4 cut(s) 210, 498, 506, 793
TauI GCSGC 1 cut(s) 55
TfiI GAWTC 3 cut(s) 234, 388, 515
Tru1I TTAA 2 cut(s) 102, 417
Tru9I TTAA 2 cut(s) 102, 417
TscAI CASTG 4 cut(s) 249, 318, 688, 753
TseFI GTSAC 2 cut(s) 251, 287
TseI GCWGC 2 cut(s) 19, 734
Tsp45I GTSAC 2 cut(s) 251, 287
TspDTI ATGAA 2 cut(s) 380, 384
TspRI CASTG 4 cut(s) 249, 318, 688, 753
VpaK11BI GGWCC 3 cut(s) 149, 493, 653
VspI ATTAAT 1 cut(s) 417
XapI RAATTY 2 cut(s) 506, 793
XceI RCATGY 1 cut(s) 269
XcmI CCANNNNNNNNNTGG 1 cut(s) 304
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.