Prupe.1G258900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016321
Physical Location & Seq
Reverse (-)
26838683 .. 26841637
2955 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G258900.1

Sequence Viewer

Length: 525 bp
ATGCAATCTTATCCTAGACCCTCGATGGCGCTCTACAGGTCCTGTGGCGCTCTCATTTCGAGCCTAGCACTCGGTCCCTCCAAAACACCAATGTCAACCATTCATCTTCAACATTTCCCAACAATTTCCTCAAAACCCATATTCAAAAACACCACCGCAAAGCCATTAAGAGCCACGAAGACACCCCAGAAGTACGTGTACCCTGACCCAATCCCCCAATTTGCAGAATCTGAGGCCCAGAAGTTCAGGGCTGAGCTTTCCAGGAAGCTGTTGAAGGACAAGGAGACTTTTGGGGATGACCTCCATAGCGTCATAGATGTTTGTTCACAGATATTCAGTGAGTTCTTGCTCAAGGAGTATGGAGGACCTGGGACATTATTGGTGGAGCCTTTCACTGATATGCTGGTTGCTCTCAAGGAGAAGGAATTACCAGGAGCACCTTTGGCTGCAAGGGCATCTCTGTTATGGGCTCAAAGCTATTTAGATCAAGACTGGGAAATTTGGAACTCAAAATCACCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.49

Weight (kDa)

8.48

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g34960
malus_domestica MD13G1087300.v1.1 MD16G1087800.v1.1
prunus_persica Prupe.1G258900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0444421
rosa_laevigata RLG00000005831
rosa_roxburghii Rroxscaffold_5G00384950
rosa_rugosa Rorug04G0353000
rosa_samantha Rh4AG413000 Rh4AG413100 Rh4BG424500 Rh4BG424600 Rh4CG438900 Rh4DG419900
rosa_wichuraiana Rw4G035480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 156
AcsI RAATTY 1 cut(s) 498
AfaI GTAC 2 cut(s) 194, 200
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 3 cut(s) 110, 145, 274
AjnI CCWGG 3 cut(s) 260, 367, 430
AluBI AGCT 3 cut(s) 256, 268, 477
AluI AGCT 3 cut(s) 256, 268, 477
Alw21I GWGCWC 1 cut(s) 439
Alw26I GTCTC 1 cut(s) 278
AlwNI CAGNNNCTG 2 cut(s) 42, 230
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 1 cut(s) 498
AspLEI GCGC 2 cut(s) 31, 50
AspS9I GGNCC 4 cut(s) 39, 74, 235, 365
AsuHPI GGTGA 1 cut(s) 507
AvaII GGWCC 3 cut(s) 39, 74, 365
BanII GRGCYC 1 cut(s) 472
BarI GAAGNNNNNNTAC 2 cut(s) 182, 214
BbsI GAAGAC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 439
BbvI GCAGC 1 cut(s) 433
BccI CCATC 1 cut(s) 19
BciT130I CCWGG 3 cut(s) 262, 369, 432
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 2 cut(s) 15, 65
BfmI CTRYAG 1 cut(s) 34
BfoI RGCGCY 2 cut(s) 32, 51
BisI GCNGC 1 cut(s) 447
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 448
Bme1390I CCNGG 3 cut(s) 262, 369, 432
Bme18I GGWCC 3 cut(s) 39, 74, 365
BmgT120I GGNCC 4 cut(s) 39, 74, 235, 365
BmiI GGNNCC 2 cut(s) 76, 387
BmrFI CCNGG 3 cut(s) 262, 369, 432
BmrI ACTGGG 1 cut(s) 502
BmsI GCATC 1 cut(s) 464
BmuI ACTGGG 1 cut(s) 502
BpiI GAAGAC 1 cut(s) 185
Bpu1102I GCTNAGC 1 cut(s) 252
BpuEI CTTGAG 2 cut(s) 335, 398
BsaAI YACGTR 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 368
Bse1I ACTGG 1 cut(s) 497
BseBI CCWGG 3 cut(s) 262, 369, 432
BseDI CCNNGG 1 cut(s) 368
BseGI GGATG 1 cut(s) 301
BseMII CTCAG 2 cut(s) 222, 243
BseNI ACTGG 1 cut(s) 497
BseXI GCAGC 1 cut(s) 433
BshFI GGCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 439
BslFI GGGAC 2 cut(s) 60, 385
BsmAI GTCTC 1 cut(s) 278
BsmFI GGGAC 2 cut(s) 60, 385
BsnI GGCC 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 439, 472
Bsp143I GATC 1 cut(s) 484
Bsp1720I GCTNAGC 1 cut(s) 252
BspACI CCGC 1 cut(s) 156
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 2 cut(s) 223, 244
BspLI GGNNCC 2 cut(s) 76, 387
BsrI ACTGG 1 cut(s) 497
BssECI CCNNGG 1 cut(s) 368
BssMI GATC 1 cut(s) 484
Bst2UI CCWGG 3 cut(s) 262, 369, 432
BstBAI YACGTR 1 cut(s) 196
BstDEI CTNAG 2 cut(s) 231, 252
BstF5I GGATG 1 cut(s) 301
BstH2I RGCGCY 2 cut(s) 32, 51
BstHHI GCGC 2 cut(s) 31, 50
BstKTI GATC 1 cut(s) 487
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 1 cut(s) 484
BstMWI GCNNNNNNNGC 2 cut(s) 443, 452
BstNI CCWGG 3 cut(s) 262, 369, 432
BstSCI CCNGG 3 cut(s) 260, 367, 430
BstSFI CTRYAG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 433
BstV2I GAAGAC 1 cut(s) 185
BsuRI GGCC 1 cut(s) 236
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 2 cut(s) 343, 393
CaiI CAGNNNCTG 2 cut(s) 42, 230
CfoI GCGC 2 cut(s) 31, 50
Cfr13I GGNCC 4 cut(s) 39, 74, 235, 365
CseI GACGC 1 cut(s) 298
Csp6I GTAC 2 cut(s) 193, 199
CviQI GTAC 2 cut(s) 193, 199
DdeI CTNAG 2 cut(s) 231, 252
DpnI GATC 1 cut(s) 486
DpnII GATC 1 cut(s) 484
Eco24I GRGCYC 1 cut(s) 472
Eco47I GGWCC 3 cut(s) 39, 74, 365
EcoO109I RGGNCCY 2 cut(s) 39, 365
EcoRII CCWGG 3 cut(s) 260, 367, 430
EcoT38I GRGCYC 1 cut(s) 472
FaiI YATR 6 cut(s) 140, 306, 314, 360, 401, 466
FaqI GGGAC 2 cut(s) 60, 385
Fnu4HI GCNGC 1 cut(s) 447
FokI GGATG 1 cut(s) 308
FriOI GRGCYC 1 cut(s) 472
Fsp4HI GCNGC 1 cut(s) 447
FspBI CTAG 2 cut(s) 15, 65
GlaI GCGC 2 cut(s) 30, 49
GluI GCNGC 1 cut(s) 447
HaeII RGCGCY 2 cut(s) 32, 51
HaeIII GGCC 1 cut(s) 236
HgaI GACGC 1 cut(s) 298
HhaI GCGC 2 cut(s) 31, 50
Hin6I GCGC 2 cut(s) 29, 48
HinP1I GCGC 2 cut(s) 29, 48
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HinfI GANTC 1 cut(s) 227
HphI GGTGA 1 cut(s) 507
Hpy166II GTNNAC 3 cut(s) 96, 199, 326
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 488
Hpy8I GTNNAC 3 cut(s) 96, 199, 326
HpyAV CCTTC 2 cut(s) 268, 415
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 3 cut(s) 4, 224, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 443, 452
HpyF3I CTNAG 2 cut(s) 231, 252
HpySE526I ACGT 1 cut(s) 195
HspAI GCGC 2 cut(s) 29, 48
Kzo9I GATC 1 cut(s) 484
LmnI GCTCC 2 cut(s) 385, 434
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 1 cut(s) 464
MaeI CTAG 2 cut(s) 15, 65
MaeII ACGT 1 cut(s) 195
MalI GATC 1 cut(s) 486
MboI GATC 1 cut(s) 484
MboII GAAGA 2 cut(s) 98, 190
MhlI GDGCHC 2 cut(s) 439, 472
MluCI AATT 4 cut(s) 123, 218, 425, 498
MnlI CCTC 6 cut(s) 31, 88, 139, 226, 311, 356
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 398
MspR9I CCNGG 3 cut(s) 262, 369, 432
MvaI CCWGG 3 cut(s) 262, 369, 432
MwoI GCNNNNNNNGC 2 cut(s) 443, 452
NdeII GATC 1 cut(s) 484
NlaIV GGNNCC 2 cut(s) 76, 387
PfeI GAWTC 1 cut(s) 227
PfoI TCCNGGA 1 cut(s) 260
PkrI GCNGC 1 cut(s) 448
Ppu21I YACGTR 1 cut(s) 196
PpuMI RGGWCCY 2 cut(s) 39, 365
Psp5II RGGWCCY 2 cut(s) 39, 365
Psp6I CCWGG 3 cut(s) 260, 367, 430
PspGI CCWGG 3 cut(s) 260, 367, 430
PspN4I GGNNCC 2 cut(s) 76, 387
PspPI GGNCC 4 cut(s) 39, 74, 235, 365
PspPPI RGGWCCY 2 cut(s) 39, 365
PstNI CAGNNNCTG 2 cut(s) 42, 230
RsaI GTAC 2 cut(s) 194, 200
RsaNI GTAC 2 cut(s) 193, 199
RseI CAYNNNNRTG 1 cut(s) 398
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 1 cut(s) 447
Sau3AI GATC 1 cut(s) 484
Sau96I GGNCC 4 cut(s) 39, 74, 235, 365
ScrFI CCNGG 3 cut(s) 262, 369, 432
SduI GDGCHC 2 cut(s) 439, 472
SetI ASST 8 cut(s) 41, 198, 258, 270, 303, 370, 442, 479
SfaNI GCATC 1 cut(s) 464
SfcI CTRYAG 1 cut(s) 34
SinI GGWCC 3 cut(s) 39, 74, 365
SmiMI CAYNNNNRTG 1 cut(s) 398
SmlI CTYRAG 2 cut(s) 350, 413
SmoI CTYRAG 2 cut(s) 350, 413
Sse9I AATT 4 cut(s) 123, 218, 425, 498
SsiI CCGC 1 cut(s) 156
SspMI CTAG 2 cut(s) 15, 65
StyD4I CCNGG 3 cut(s) 260, 367, 430
TaiI ACGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 23, 59
TaqII GACCGA 1 cut(s) 62
TasI AATT 4 cut(s) 123, 218, 425, 498
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 2 cut(s) 343, 400
TseI GCWGC 1 cut(s) 446
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 2 cut(s) 343, 400
VpaK11BI GGWCC 3 cut(s) 39, 74, 365
XapI RAATTY 1 cut(s) 498
XspI CTAG 2 cut(s) 15, 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.