Rh4BG424600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0016321
Physical Location & Seq
Reverse (-)
56886620 .. 56887458
839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG424600.1

Sequence Viewer

Length: 453 bp
ATGGCAATGCACCGCTCCTGTGGGCCTCTCATTTCGAGCCCATTACTGACTCCCGCCACAACTCCAACCTCGACCATTCCCATTCATTCATGCCCGCCAATTGTTTGTATTAATGCCAGAGTCAGAAACACCACCACAAAGCCACTAAGAGCCACCGCCAGCACACCCCAGAAATACGTGTACCCGGACCCAATTCCGGAATTTGCAGAATCCTTTGACATGCATGTGTGCCGTGGAATTCTGTACTGTAGGAGACCCACAAGTTCAGACAAGGCGACTTTTGGGGATGACTTCAGTAGTGTCATTGACGTATGTGCCGAGGCGTTGGTTGAGAACCTGGAGGGCACCTCGCACTTTAAAACTCTATTATTGTTAACCTATGACGATGTGGGCATACCATACTTGCGAGACCACCATCATACCATGCTTGACCGCTGGCTCAAACTTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.73

Weight (kDa)

6.63

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g34960
malus_domestica MD13G1087300.v1.1 MD16G1087800.v1.1
prunus_persica Prupe.1G258900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0444421
rosa_laevigata RLG00000005831
rosa_roxburghii Rroxscaffold_5G00384950
rosa_rugosa Rorug04G0353000
rosa_samantha Rh4AG413000 Rh4AG413100 Rh4BG424500 Rh4BG424600 Rh4CG438900 Rh4DG419900
rosa_wichuraiana Rw4G035480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 344
AccBSI CCGCTC 1 cut(s) 15
AccIII TCCGGA 1 cut(s) 196
AciI CCGC 5 cut(s) 13, 54, 95, 156, 433
AcsI RAATTY 2 cut(s) 200, 237
AcuI CTGAAG 1 cut(s) 277
AfaI GTAC 2 cut(s) 182, 245
AfiI CCNNNNNNNGG 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 177
AjnI CCWGG 1 cut(s) 336
Alw26I GTCTC 2 cut(s) 247, 402
Aor13HI TCCGGA 1 cut(s) 196
AoxI GGCC 1 cut(s) 23
ApoI RAATTY 2 cut(s) 200, 237
AseI ATTAAT 1 cut(s) 111
AspS9I GGNCC 2 cut(s) 23, 187
AsuC2I CCSGG 1 cut(s) 185
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 347
BanI GGYRCC 1 cut(s) 344
BanII GRGCYC 1 cut(s) 41
BccI CCATC 1 cut(s) 423
BceAI ACGGC 1 cut(s) 216
BciT130I CCWGG 1 cut(s) 338
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 2 cut(s) 247, 402
BfmI CTRYAG 1 cut(s) 247
Bme1390I CCNGG 2 cut(s) 185, 338
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 2 cut(s) 23, 187
BmiI GGNNCC 2 cut(s) 189, 346
BmrFI CCNGG 2 cut(s) 185, 338
BplI GAGNNNNNCTC 2 cut(s) 332, 364
BpmI CTGGAG 1 cut(s) 359
BpuMI CCSGG 1 cut(s) 185
BsaAI YACGTR 1 cut(s) 178
BsaI GGTCTC 2 cut(s) 247, 402
BsaJI CCNNGG 2 cut(s) 232, 318
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 12
BseAI TCCGGA 1 cut(s) 196
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 2 cut(s) 232, 318
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 12
BseSI GKGCMC 1 cut(s) 347
BshFI GGCC 1 cut(s) 25
BshNI GGYRCC 1 cut(s) 344
BsiSI CCGG 2 cut(s) 185, 197
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 2 cut(s) 247, 402
BsnI GGCC 1 cut(s) 25
Bso31I GGTCTC 2 cut(s) 247, 402
Bsp1286I GDGCHC 2 cut(s) 41, 347
Bsp13I TCCGGA 1 cut(s) 196
BspACI CCGC 5 cut(s) 13, 54, 95, 156, 433
BspANI GGCC 1 cut(s) 25
BspEI TCCGGA 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 189, 346
BspT107I GGYRCC 1 cut(s) 344
BspTNI GGTCTC 2 cut(s) 247, 402
BsrBI CCGCTC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 232, 318
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 178
BstC8I GCNNGC 3 cut(s) 95, 160, 437
BstDEI CTNAG 1 cut(s) 146
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 1 cut(s) 292
BstMAI GTCTC 2 cut(s) 247, 402
BstNI CCWGG 1 cut(s) 338
BstNSI RCATGY 2 cut(s) 223, 227
BstSCI CCNGG 2 cut(s) 183, 336
BstSFI CTRYAG 1 cut(s) 247
BstSLI GKGCMC 1 cut(s) 347
BsuRI GGCC 1 cut(s) 25
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 1 cut(s) 292
Cac8I GCNNGC 3 cut(s) 95, 160, 437
Cfr13I GGNCC 2 cut(s) 23, 187
Csp6I GTAC 2 cut(s) 181, 244
CviAII CATG 4 cut(s) 90, 220, 224, 424
CviJI RGCY 5 cut(s) 25, 39, 142, 152, 439
CviKI_1 RGCY 5 cut(s) 25, 39, 142, 152, 439
CviQI GTAC 2 cut(s) 181, 244
DdeI CTNAG 1 cut(s) 146
DraI TTTAAA 1 cut(s) 358
Eco24I GRGCYC 1 cut(s) 41
Eco31I GGTCTC 2 cut(s) 247, 402
Eco47I GGWCC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 277
EcoRI GAATTC 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 41
FaeI CATG 4 cut(s) 93, 223, 227, 427
FaiI YATR 9 cut(s) 91, 221, 225, 313, 381, 395, 400, 420, 425
FatI CATG 4 cut(s) 89, 219, 223, 423
FauI CCCGC 2 cut(s) 61, 102
FokI GGATG 1 cut(s) 299
FriOI GRGCYC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 359
HaeIII GGCC 1 cut(s) 25
HapII CCGG 2 cut(s) 185, 197
Hin1II CATG 4 cut(s) 93, 223, 227, 427
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HinfI GANTC 3 cut(s) 49, 120, 209
HpaI GTTAAC 1 cut(s) 375
HpaII CCGG 2 cut(s) 185, 197
Hpy166II GTNNAC 2 cut(s) 181, 375
Hpy188I TCNGA 2 cut(s) 125, 268
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 2 cut(s) 181, 375
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 2 cut(s) 177, 309
HpyCH4V TGCA 3 cut(s) 10, 206, 223
HpyF3I CTNAG 1 cut(s) 146
HpySE526I ACGT 2 cut(s) 177, 309
Hsp92II CATG 4 cut(s) 93, 223, 227, 427
Kpn2I TCCGGA 1 cut(s) 196
KspAI GTTAAC 1 cut(s) 375
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 9 cut(s) 31, 130, 172, 182, 198, 210, 323, 350, 421
MaeII ACGT 2 cut(s) 177, 309
MbiI CCGCTC 1 cut(s) 15
MfeI CAATTG 1 cut(s) 99
MhlI GDGCHC 2 cut(s) 41, 347
MluCI AATT 4 cut(s) 99, 192, 200, 237
MlyI GAGTC 2 cut(s) 43, 129
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 5 cut(s) 36, 79, 313, 334, 358
Mph1103I ATGCAT 1 cut(s) 225
MroI TCCGGA 1 cut(s) 196
MseI TTAA 3 cut(s) 111, 357, 374
MslI CAYNNNNRTG 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 435
MspI CCGG 2 cut(s) 185, 197
MspR9I CCNGG 2 cut(s) 185, 338
MunI CAATTG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 338
NciI CCSGG 1 cut(s) 185
NlaIII CATG 4 cut(s) 93, 223, 227, 427
NlaIV GGNNCC 2 cut(s) 189, 346
NmeAIII GCCGAG 1 cut(s) 343
NsiI ATGCAT 1 cut(s) 225
NspI RCATGY 2 cut(s) 223, 227
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PfeI GAWTC 1 cut(s) 209
PleI GAGTC 2 cut(s) 43, 128
PpsI GAGTC 2 cut(s) 43, 128
Ppu21I YACGTR 1 cut(s) 178
PshBI ATTAAT 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 2 cut(s) 189, 346
PspPI GGNCC 2 cut(s) 23, 187
RsaI GTAC 2 cut(s) 182, 245
RsaNI GTAC 2 cut(s) 181, 244
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 3 cut(s) 111, 357, 374
Sau96I GGNCC 2 cut(s) 23, 187
SchI GAGTC 2 cut(s) 43, 129
ScrFI CCNGG 2 cut(s) 185, 338
SduI GDGCHC 2 cut(s) 41, 347
SetI ASST 6 cut(s) 71, 180, 312, 339, 350, 380
SfcI CTRYAG 1 cut(s) 247
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 224
Sse9I AATT 4 cut(s) 99, 192, 200, 237
SsiI CCGC 5 cut(s) 13, 54, 95, 156, 433
StyD4I CCNGG 2 cut(s) 183, 336
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 2 cut(s) 180, 312
TaqI TCGA 2 cut(s) 35, 71
TasI AATT 4 cut(s) 99, 192, 200, 237
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 3 cut(s) 111, 357, 374
Tru9I TTAA 3 cut(s) 111, 357, 374
TspDTI ATGAA 2 cut(s) 74, 78
VpaK11BI GGWCC 1 cut(s) 187
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 2 cut(s) 200, 237
XceI RCATGY 2 cut(s) 223, 227
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.