Rroxscaffold_5G00384950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0016321
Physical Location & Seq
Reverse (-)
64145999 .. 64150451
4453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384950.1

Sequence Viewer

Length: 384 bp
ATGTTGCCGCCGGAAGCGGAACCCCGTATTTCTTCTAGAGAATCTCCTAATTGTTCCACAGCAACTAGAAAGAGATTCTTTAACCGAAAGAATTCGGTTCAGATGGAGGATACCTATCCAGAAGAACTATTGAAGGACAAGGCGACTTTTGGGGATGACTTCAGCAGTGTCATTGTCGTATGCGCCGAGATATTTAGTGAATTCTTGCTCAAGGAGTATGGAGGACCTGGAACATTGTTGGTGGATCCCTTCACTGATATGTTAGTTGCTCTCAAGGAGAAGGAACTACCTGGAGCACCTTTGGCTGCAAGGGCAACACTGTTATGGGCTCAAAACTATTTGGATCAAGACTGGGATGTTTGGAATTCGAAATCTTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.35

Weight (kDa)

4.78

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g34960
malus_domestica MD13G1087300.v1.1 MD16G1087800.v1.1
prunus_persica Prupe.1G258900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0444421
rosa_laevigata RLG00000005831
rosa_roxburghii Rroxscaffold_5G00384950
rosa_rugosa Rorug04G0353000
rosa_samantha Rh4AG413000 Rh4AG413100 Rh4BG424500 Rh4BG424600 Rh4CG438900 Rh4DG419900
rosa_wichuraiana Rw4G035480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 8, 17
AclWI GGATC 3 cut(s) 239, 252, 351
AcsI RAATTY 3 cut(s) 91, 200, 364
AcuI CTGAAG 1 cut(s) 145
AgsI TTSAA 2 cut(s) 133, 378
AjnI CCWGG 2 cut(s) 226, 289
Alw21I GWGCWC 1 cut(s) 298
AlwI GGATC 3 cut(s) 239, 252, 351
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 3 cut(s) 91, 200, 364
Asp700I GAANNNNTTC 1 cut(s) 91
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 224
AsuII TTCGAA 1 cut(s) 368
AvaII GGWCC 1 cut(s) 224
BamHI GGATCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 97
BciT130I CCWGG 2 cut(s) 228, 291
BciVI GTATCC 1 cut(s) 103
BfaI CTAG 2 cut(s) 36, 66
BfuI GTATCC 1 cut(s) 103
BisI GCNGC 2 cut(s) 8, 306
BlsI GCNGC 2 cut(s) 9, 307
Bme1390I CCNGG 2 cut(s) 228, 291
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 2 cut(s) 21, 246
BmrFI CCNGG 2 cut(s) 228, 291
BmrI ACTGGG 1 cut(s) 361
BmuI ACTGGG 1 cut(s) 361
BpmI CTGGAG 1 cut(s) 312
Bpu14I TTCGAA 1 cut(s) 368
BpuEI CTTGAG 2 cut(s) 194, 257
BsaBI GATNNNNATC 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 356
Bse8I GATNNNNATC 1 cut(s) 114
BseBI CCWGG 2 cut(s) 228, 291
BseGI GGATG 2 cut(s) 160, 361
BseJI GATNNNNATC 1 cut(s) 114
BseNI ACTGG 1 cut(s) 356
BseXI GCAGC 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 298
BsiSI CCGG 1 cut(s) 11
Bsp119I TTCGAA 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 298, 331
Bsp143I GATC 2 cut(s) 244, 343
BspACI CCGC 2 cut(s) 8, 17
BspLI GGNNCC 2 cut(s) 21, 246
BspPI GGATC 3 cut(s) 239, 252, 351
BspT104I TTCGAA 1 cut(s) 368
BsrI ACTGG 1 cut(s) 356
BssMI GATC 2 cut(s) 244, 343
Bst2UI CCWGG 2 cut(s) 228, 291
Bst4CI ACNGT 1 cut(s) 321
BstBI TTCGAA 1 cut(s) 368
BstF5I GGATG 2 cut(s) 160, 361
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 2 cut(s) 247, 346
BstMBI GATC 2 cut(s) 244, 343
BstMWI GCNNNNNNNGC 2 cut(s) 302, 311
BstNI CCWGG 2 cut(s) 228, 291
BstSCI CCNGG 2 cut(s) 226, 289
BstV1I GCAGC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuI GTATCC 1 cut(s) 103
BtsCI GGATG 2 cut(s) 160, 361
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 3 cut(s) 172, 252, 317
CfoI GCGC 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 224
CviJI RGCY 2 cut(s) 305, 329
CviKI_1 RGCY 2 cut(s) 305, 329
DpnI GATC 2 cut(s) 246, 345
DpnII GATC 2 cut(s) 244, 343
Eco24I GRGCYC 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 224
EcoRI GAATTC 3 cut(s) 91, 200, 364
EcoRII CCWGG 2 cut(s) 226, 289
EcoT38I GRGCYC 1 cut(s) 331
FaiI YATR 4 cut(s) 181, 219, 260, 325
FalI AAGNNNNNCTT 2 cut(s) 62, 94
Fnu4HI GCNGC 2 cut(s) 8, 306
FokI GGATG 2 cut(s) 167, 368
FriOI GRGCYC 1 cut(s) 331
Fsp4HI GCNGC 2 cut(s) 8, 306
FspBI CTAG 2 cut(s) 36, 66
GlaI GCGC 1 cut(s) 184
GluI GCNGC 2 cut(s) 8, 306
GsuI CTGGAG 1 cut(s) 312
HapII CCGG 1 cut(s) 11
HhaI GCGC 1 cut(s) 185
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HinfI GANTC 2 cut(s) 41, 75
HpaII CCGG 1 cut(s) 11
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 3 cut(s) 36, 119, 347
HpyAV CCTTC 3 cut(s) 127, 259, 274
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4V TGCA 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 311
HspAI GCGC 1 cut(s) 183
Kzo9I GATC 2 cut(s) 244, 343
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 7 cut(s) 24, 132, 213, 240, 276, 303, 337
Lsp1109I GCAGC 1 cut(s) 292
MaeI CTAG 2 cut(s) 36, 66
MalI GATC 2 cut(s) 246, 345
MboI GATC 2 cut(s) 244, 343
MboII GAAGA 3 cut(s) 24, 134, 366
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 2 cut(s) 298, 331
MluCI AATT 4 cut(s) 49, 91, 200, 364
MnlI CCTC 2 cut(s) 100, 215
MroXI GAANNNNTTC 1 cut(s) 91
MseI TTAA 1 cut(s) 81
MslI CAYNNNNRTG 2 cut(s) 257, 322
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 2 cut(s) 228, 291
MvaI CCWGG 2 cut(s) 228, 291
MwoI GCNNNNNNNGC 2 cut(s) 302, 311
NdeII GATC 2 cut(s) 244, 343
NlaIV GGNNCC 2 cut(s) 21, 246
NmeAIII GCCGAG 1 cut(s) 211
NspV TTCGAA 1 cut(s) 368
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PdmI GAANNNNTTC 1 cut(s) 91
PfeI GAWTC 2 cut(s) 41, 75
PkrI GCNGC 2 cut(s) 9, 307
PpuMI RGGWCCY 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 224
Psp6I CCWGG 2 cut(s) 226, 289
PspGI CCWGG 2 cut(s) 226, 289
PspN4I GGNNCC 2 cut(s) 21, 246
PspPI GGNCC 1 cut(s) 224
PspPPI RGGWCCY 1 cut(s) 224
PsuI RGATCY 1 cut(s) 244
RseI CAYNNNNRTG 2 cut(s) 257, 322
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 2 cut(s) 8, 306
Sau3AI GATC 2 cut(s) 244, 343
Sau96I GGNCC 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 228, 291
SduI GDGCHC 2 cut(s) 298, 331
SetI ASST 4 cut(s) 116, 229, 292, 301
SfuI TTCGAA 1 cut(s) 368
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 2 cut(s) 257, 322
SmlI CTYRAG 2 cut(s) 209, 272
SmoI CTYRAG 2 cut(s) 209, 272
Sse9I AATT 4 cut(s) 49, 91, 200, 364
SsiI CCGC 2 cut(s) 8, 17
SspMI CTAG 2 cut(s) 36, 66
StyD4I CCNGG 2 cut(s) 226, 289
TaaI ACNGT 1 cut(s) 321
TaqI TCGA 1 cut(s) 368
TasI AATT 4 cut(s) 49, 91, 200, 364
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 2 cut(s) 41, 75
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 3 cut(s) 172, 259, 324
TseI GCWGC 1 cut(s) 305
TspRI CASTG 3 cut(s) 172, 259, 324
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 3 cut(s) 91, 200, 364
XbaI TCTAGA 1 cut(s) 35
XmnI GAANNNNTTC 1 cut(s) 91
XspI CTAG 2 cut(s) 36, 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.