Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003371

Physical Location & Seq

Genomic Coordinates Forward (+)

14973394 .. 14975207

Gene Structure 1814 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1179800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGGCTTGGAATCCAACTCCACCCACTTCACAAATATCAGAAGCTTAGATACCGATTCTAAGATTGAAGACAGTGGGAACAACTTAGTTATAGAGGCATATCCTTTAGGAATGATGCCTCCGATGAATGCTGTCGATGCAGAGGATGGAGAGTCTGGAGTACTGGAACCATATGTGGGGTTAGAGTTTGATTCAGCAGATGTTGCCCGTGATTTTTACACTCTCTATGCAGCACGGATGGGGTTTAAAGTTCGAACTGGTCAGTTGTATCGCTCGAGAACAGATGGGTCAGTTTCTTCTCGAAGATTTGTGTGCTCCAAGGAAGGATTTCAGATTAGTTCACGGACAGGCTGTCCGGCATTAATAAGAGTGCAGAGACGCGATTCTGGGAAATGGGTTGTAGACCTTTTCCTGAAGGATCACAATCATGGTCTTGATCTTGAATCATCTACAGAGGAAAATCATACTCTGATTTTGCAGAAGAAGAGTTCCATGCCGACAAATACTGTTGTTGAAGTGTCTCATAGGCCAAAAGTCAAATTGATTAAGGCAATTGAGGATAAACCACATTGCCCGTCTGGAGTTATAAGTGCCAAGCGCTTAAAACGGGGTGAAGAGGAAATGCAGTCAGAAATTGATCTATCTGCAGGTCTAGAGTTCAATTCGGCCAATGAAGCATACCAATTTTATCATGTGTACGCTGAGAATACAGGATTTAGAATCAGGATTGGTCAATTGTTTCGTTCAAAGCTTGACGGGTCAATTACATCTCGGAGATTTGTGTGCTCAAAGGAAGGGTTTCAGCATCCATCAAGAGTTGGTTGTGGGGCATATATGAGGATTAAGAGACAAGATTCTGGAAGGTGGGTAGTGGACCGTTTTGATAAAAATCATAACCATGAGTTTGAGTCTCACCTGGAAGTTCAAAAGAAAAATCTATTTTCTTCAAAAAAGTTCATAGAAGAGGAGATTGGAGGGCTGGAAATTGAAGATATTGTTGACATAAACAGTGGAAACCTTGTCAAAAGACGAAGAGAAAATCACATTGGAAGCGATTGGTACAGTGTGCTGTTTGACTATTTTCAAACCAAACAGGCCGAAGATACAGGATTCTTCTATGCAGTAGAAGTTGATAATGGTATTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

383

Amino Acids

43.51

Weight (kDa)

6.1

Isoelectric Point (pI)

57.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	71 - 145	7.3e-19	FAR1 DNA-binding domain
FAR1	PF03101	228 - 302	3.6e-19	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06250 AT3G06250 AT3G06250 AT5G18960 AT5G18960
fragaria_vesca	FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102
malus_domestica	MD13G1179800.v1.1 MD16G1181100.v1.1
prunus_persica	Prupe.1G148400_v2.0.a1 Prupe.1G148400_v2.0.a1
pyrus_communis	pycom13g15530 pycom16g15190
rosa_chinensis	RchiOBHm_Chr4g0419141
rosa_laevigata	RLG00000007823
rosa_multiflora	Rmu_sc0001826.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362200
rosa_rugosa	Rorug04G0157200 Rorug04G0157300 Rorug04G0157400 Rorug04G0157500 Rorug04G0157600
rosa_samantha	Rh4AG219200 Rh4BG220500 Rh4CG231400 Rh4DG218000
rosa_wichuraiana	Rw4G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
Acc36I	ACCTGC	1 cut(s)	638
AccI	GTMKAC	1 cut(s)	402
AccII	CGCG	1 cut(s)	381
AclWI	GGATC	1 cut(s)	426
AcoI	YGGCCR	1 cut(s)	666
AcuI	CTGAAG	1 cut(s)	434
AfaI	GTAC	3 cut(s)	162, 698, 1061
AfeI	AGCGCT	1 cut(s)	599
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	9 cut(s)	68, 443, 515, 661, 747, 926, 948, 989, 1085
AhdI	GACNNNNNGTC	1 cut(s)	351
AjnI	CCWGG	1 cut(s)	915
AjuI	GAANNNNNNNTTGG	4 cut(s)	954, 986, 1029, 1061
AluBI	AGCT	2 cut(s)	45, 751
AluI	AGCT	2 cut(s)	45, 751
Alw21I	GWGCWC	2 cut(s)	317, 788
Alw26I	GTCTC	4 cut(s)	370, 525, 841, 915
AlwI	GGATC	1 cut(s)	426
Ama87I	CYCGRG	1 cut(s)	274
Aor51HI	AGCGCT	1 cut(s)	599
AoxI	GGCC	3 cut(s)	527, 666, 1095
ApeKI	GCWGC	1 cut(s)	230
AseI	ATTAAT	1 cut(s)	362
Asp700I	GAANNNNTTC	2 cut(s)	327, 798
AspLEI	GCGC	1 cut(s)	600
AspS9I	GGNCC	1 cut(s)	874
AsuHPI	GGTGA	2 cut(s)	623, 905
AsuII	TTCGAA	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	874
BarI	GAAGNNNNNNTAC	2 cut(s)	34, 66
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	2 cut(s)	317, 788
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	4 cut(s)	140, 232, 278, 817
BciT130I	CCWGG	1 cut(s)	917
BcoDI	GTCTC	4 cut(s)	370, 525, 841, 915
BfaI	CTAG	1 cut(s)	653
BfmI	CTRYAG	2 cut(s)	450, 645
BfoI	RGCGCY	1 cut(s)	601
BfuAI	ACCTGC	1 cut(s)	638
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
BmcAI	AGTACT	1 cut(s)	162
Bme1390I	CCNGG	1 cut(s)	917
Bme18I	GGWCC	1 cut(s)	874
BmeRI	GACNNNNNGTC	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	874
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	917
BmsI	GCATC	3 cut(s)	105, 127, 814
BpiI	GAAGAC	1 cut(s)	75
BpmI	CTGGAG	2 cut(s)	177, 600
Bpu14I	TTCGAA	1 cut(s)	253
BsaBI	GATNNNNATC	2 cut(s)	423, 888
BsaJI	CCNNGG	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	168, 262
Bse3DI	GCAATG	1 cut(s)	568
Bse8I	GATNNNNATC	2 cut(s)	423, 888
BseBI	CCWGG	1 cut(s)	917
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	3 cut(s)	151, 243, 805
BseJI	GATNNNNATC	2 cut(s)	423, 888
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	1 cut(s)	693
BseNI	ACTGG	2 cut(s)	168, 262
BseRI	GAGGAG	1 cut(s)	980
BseXI	GCAGC	1 cut(s)	242
BsgI	GTGCAG	1 cut(s)	392
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	3 cut(s)	529, 668, 1097
BsiHKAI	GWGCWC	2 cut(s)	317, 788
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	4 cut(s)	370, 525, 841, 915
BsmBI	CGTCTC	1 cut(s)	370
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	3 cut(s)	529, 668, 1097
BsoBI	CYCGRG	1 cut(s)	274
Bsp119I	TTCGAA	1 cut(s)	253
Bsp1286I	GDGCHC	2 cut(s)	317, 788
Bsp143I	GATC	3 cut(s)	418, 436, 637
BspANI	GGCC	3 cut(s)	529, 668, 1097
BspCNI	CTCAG	1 cut(s)	694
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	168
BspMAI	CTGCAG	1 cut(s)	649
BspMI	ACCTGC	1 cut(s)	638
BspPI	GGATC	1 cut(s)	426
BspT104I	TTCGAA	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	568
BsrI	ACTGG	2 cut(s)	168, 262
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	3 cut(s)	418, 436, 637
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	917
Bst4CI	ACNGT	5 cut(s)	74, 508, 878, 1010, 1064
Bst6I	CTCTTC	4 cut(s)	479, 609, 957, 1027
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstBI	TTCGAA	1 cut(s)	253
BstDEI	CTNAG	4 cut(s)	46, 60, 85, 702
BstF5I	GGATG	3 cut(s)	151, 243, 805
BstFNI	CGCG	1 cut(s)	381
BstH2I	RGCGCY	1 cut(s)	601
BstHHI	GCGC	1 cut(s)	600
BstKTI	GATC	3 cut(s)	421, 439, 640
BstMAI	GTCTC	4 cut(s)	370, 525, 841, 915
BstMBI	GATC	3 cut(s)	418, 436, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 203, 674
BstNI	CCWGG	1 cut(s)	917
BstSCI	CCNGG	1 cut(s)	915
BstSFI	CTRYAG	2 cut(s)	450, 645
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	242
BstV2I	GAAGAC	1 cut(s)	75
BsuRI	GGCC	3 cut(s)	529, 668, 1097
BtsCI	GGATG	3 cut(s)	151, 243, 805
BtsIMutI	CAGTG	3 cut(s)	79, 1015, 1069
BveI	ACCTGC	1 cut(s)	638
CfoI	GCGC	1 cut(s)	600
Cfr13I	GGNCC	1 cut(s)	874
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	3 cut(s)	161, 697, 1060
CviAII	CATG	4 cut(s)	428, 493, 692, 899
CviJI	RGCY	8 cut(s)	6, 45, 351, 529, 668, 751, 979, 1097
CviKI_1	RGCY	8 cut(s)	6, 45, 351, 529, 668, 751, 979, 1097
CviQI	GTAC	3 cut(s)	161, 697, 1060
DdeI	CTNAG	4 cut(s)	46, 60, 85, 702
DpnI	GATC	3 cut(s)	420, 438, 639
DpnII	GATC	3 cut(s)	418, 436, 637
DraI	TTTAAA	1 cut(s)	247
DriI	GACNNNNNGTC	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	666
Eam1104I	CTCTTC	4 cut(s)	479, 609, 957, 1027
Eam1105I	GACNNNNNGTC	1 cut(s)	351
EarI	CTCTTC	4 cut(s)	479, 609, 957, 1027
Eco130I	CCWWGG	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	874
Eco47III	AGCGCT	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	434
Eco88I	CYCGRG	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	915
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	370
FaeI	CATG	4 cut(s)	431, 496, 695, 902
FatI	CATG	4 cut(s)	427, 492, 691, 898
FauNDI	CATATG	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	3 cut(s)	158, 250, 792
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	653
GlaI	GCGC	1 cut(s)	599
GluI	GCNGC	1 cut(s)	231
GsuI	CTGGAG	2 cut(s)	177, 600
HaeII	RGCGCY	1 cut(s)	601
HaeIII	GGCC	3 cut(s)	529, 668, 1097
HapII	CCGG	1 cut(s)	356
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	1 cut(s)	600
Hin1II	CATG	4 cut(s)	431, 496, 695, 902
Hin6I	GCGC	1 cut(s)	598
HinP1I	GCGC	1 cut(s)	598
HincII	GTYRAC	1 cut(s)	1000
HindII	GTYRAC	1 cut(s)	1000
HindIII	AAGCTT	2 cut(s)	43, 749
HpaII	CCGG	1 cut(s)	356
HphI	GGTGA	2 cut(s)	623, 905
Hpy166II	GTNNAC	5 cut(s)	341, 403, 697, 874, 1000
Hpy188I	TCNGA	6 cut(s)	41, 123, 333, 471, 631, 774
Hpy8I	GTNNAC	5 cut(s)	341, 403, 697, 874, 1000
HpyAV	CCTTC	4 cut(s)	317, 409, 788, 855
HpyCH4III	ACNGT	5 cut(s)	74, 508, 878, 1010, 1064
HpyCH4V	TGCA	7 cut(s)	140, 230, 373, 478, 625, 647, 1121
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 203, 674
HpyF3I	CTNAG	4 cut(s)	46, 60, 85, 702
Hsp92II	CATG	4 cut(s)	431, 496, 695, 902
HspAI	GCGC	1 cut(s)	598
Kzo9I	GATC	3 cut(s)	418, 436, 637
LmnI	GCTCC	1 cut(s)	320
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	3 cut(s)	105, 127, 814
MaeI	CTAG	1 cut(s)	653
MalI	GATC	3 cut(s)	420, 438, 639
MboI	GATC	3 cut(s)	418, 436, 637
MfeI	CAATTG	2 cut(s)	552, 734
MhlI	GDGCHC	2 cut(s)	317, 788
MluCI	AATT	8 cut(s)	539, 552, 633, 661, 683, 734, 762, 984
MlyI	GAGTC	2 cut(s)	161, 917
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	9 cut(s)	88, 129, 136, 448, 550, 610, 831, 958, 968
MroXI	GAANNNNTTC	2 cut(s)	327, 798
MseI	TTAA	5 cut(s)	246, 362, 546, 602, 843
MslI	CAYNNNNRTG	2 cut(s)	426, 897
MspI	CCGG	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	917
MunI	CAATTG	2 cut(s)	552, 734
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	917
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	137, 203, 674
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	3 cut(s)	418, 436, 637
NlaIII	CATG	4 cut(s)	431, 496, 695, 902
NlaIV	GGNNCC	1 cut(s)	168
NspV	TTCGAA	1 cut(s)	253
PaeR7I	CTCGAG	1 cut(s)	274
PctI	GAATGC	1 cut(s)	133
PdmI	GAANNNNTTC	2 cut(s)	327, 798
PfeI	GAWTC	8 cut(s)	11, 56, 191, 383, 443, 720, 854, 1110
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	2 cut(s)	160, 916
PpsI	GAGTC	2 cut(s)	160, 916
PshBI	ATTAAT	1 cut(s)	362
PsiI	TTATAA	1 cut(s)	587
Psp6I	CCWGG	1 cut(s)	915
PspGI	CCWGG	1 cut(s)	915
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	874
PstI	CTGCAG	1 cut(s)	649
RsaI	GTAC	3 cut(s)	162, 698, 1061
RsaNI	GTAC	3 cut(s)	161, 697, 1060
RseI	CAYNNNNRTG	2 cut(s)	426, 897
SaqAI	TTAA	5 cut(s)	246, 362, 546, 602, 843
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	3 cut(s)	418, 436, 637
Sau96I	GGNCC	1 cut(s)	874
ScaI	AGTACT	1 cut(s)	162
SchI	GAGTC	2 cut(s)	161, 917
ScrFI	CCNGG	1 cut(s)	917
SduI	GDGCHC	2 cut(s)	317, 788
SetI	ASST	7 cut(s)	47, 408, 652, 753, 866, 918, 1020
SfaNI	GCATC	3 cut(s)	105, 127, 814
SfcI	CTRYAG	2 cut(s)	450, 645
Sfr274I	CTCGAG	1 cut(s)	274
SfuI	TTCGAA	1 cut(s)	253
SinI	GGWCC	1 cut(s)	874
SlaI	CTCGAG	1 cut(s)	274
SmiMI	CAYNNNNRTG	2 cut(s)	426, 897
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	8 cut(s)	539, 552, 633, 661, 683, 734, 762, 984
SspMI	CTAG	1 cut(s)	653
StyD4I	CCNGG	1 cut(s)	915
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	5 cut(s)	74, 508, 878, 1010, 1064
TaqI	TCGA	4 cut(s)	135, 253, 275, 301
TasI	AATT	8 cut(s)	539, 552, 633, 661, 683, 734, 762, 984
TatI	WGTACW	1 cut(s)	160
TfiI	GAWTC	8 cut(s)	11, 56, 191, 383, 443, 720, 854, 1110
Tru1I	TTAA	5 cut(s)	246, 362, 546, 602, 843
Tru9I	TTAA	5 cut(s)	246, 362, 546, 602, 843
TscAI	CASTG	3 cut(s)	79, 1015, 1069
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	3 cut(s)	140, 687, 946
TspGWI	ACGGA	2 cut(s)	250, 358
TspRI	CASTG	3 cut(s)	79, 1015, 1069
VpaK11BI	GGWCC	1 cut(s)	874
VspI	ATTAAT	1 cut(s)	362
XbaI	TCTAGA	1 cut(s)	652
XhoI	CTCGAG	1 cut(s)	274
XmiI	GTMKAC	1 cut(s)	402
XmnI	GAANNNNTTC	2 cut(s)	327, 798
XspI	CTAG	1 cut(s)	653
ZrmI	AGTACT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.