Rorug04G0157200

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003371
Physical Location & Seq
Forward (+)
27421654 .. 27422092
439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0157200.1

Sequence Viewer

Length: 399 bp
ATGACTCTTTTTAAGCTGAATTTTGATGGCTCTGTGATCCTTAATTCTAGTGCAGCTGCTGGCTTTGTTTTTAGGAATTCCACTGGTGAGCCTATCTTAGCAGCAAAAACATTAGCACTACAAGCTGGTTTGACTGCTGCCTGGATCCATGCCTTTAAAAATATTGAAGTTGAAGGTGACTCAAAATTATTTCTGAATAGCATTATGGCTACAAGCCGCCCCCATTGGAGAATTATTCAGCTTATCCATGACATAATTAAAAATTCTTGCCACTGTCACCCAAGTAACATCTTTCCATCATACCAAAAGAGAAGCAAACTTCTTGGTGGATGCAATTGCAAAGATAGGGCATTCTCATCATACTCAAAGTTGGTTACGAGCTTTTCCTCTTTCTGCTAA

Protein Analysis

132

Amino Acids

14.57

Weight (kDa)

9.43

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 10 - 90 1.7e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 217
AclWI GGATC 3 cut(s) 31, 139, 152
AcsI RAATTY 3 cut(s) 19, 76, 262
AgsI TTSAA 2 cut(s) 167, 173
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 5 cut(s) 16, 56, 125, 241, 381
AluI AGCT 5 cut(s) 16, 56, 125, 241, 381
AlwI GGATC 3 cut(s) 31, 139, 152
AlwNI CAGNNNCTG 1 cut(s) 59
ApeKI GCWGC 4 cut(s) 53, 56, 101, 137
ApoI RAATTY 3 cut(s) 19, 76, 262
AsuHPI GGTGA 3 cut(s) 98, 188, 269
BamHI GGATCC 1 cut(s) 144
BbvI GCAGC 4 cut(s) 43, 65, 113, 124
BccI CCATC 2 cut(s) 20, 304
BciT130I CCWGG 1 cut(s) 142
BfaI CTAG 1 cut(s) 48
BisI GCNGC 5 cut(s) 54, 57, 102, 138, 217
BlsI GCNGC 5 cut(s) 55, 58, 103, 139, 218
Bme1390I CCNGG 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 335
BseNI ACTGG 1 cut(s) 88
BseXI GCAGC 4 cut(s) 43, 65, 113, 124
BsgI GTGCAG 1 cut(s) 72
BsmI GAATGC 1 cut(s) 350
Bsp143I GATC 2 cut(s) 36, 144
BspACI CCGC 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 146
BspPI GGATC 3 cut(s) 31, 139, 152
BsrI ACTGG 1 cut(s) 88
BssMI GATC 2 cut(s) 36, 144
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 335
BstKTI GATC 2 cut(s) 39, 147
BstMBI GATC 2 cut(s) 36, 144
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 140
BstV1I GCAGC 4 cut(s) 43, 65, 113, 124
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BtsCI GGATG 1 cut(s) 335
BtsIMutI CAGTG 2 cut(s) 81, 271
Cac8I GCNNGC 1 cut(s) 61
CaiI CAGNNNCTG 1 cut(s) 59
CviAII CATG 2 cut(s) 149, 248
DdeI CTNAG 1 cut(s) 97
DpnI GATC 2 cut(s) 38, 146
DpnII GATC 2 cut(s) 36, 144
DraI TTTAAA 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 140
FaeI CATG 2 cut(s) 152, 251
FaiI YATR 6 cut(s) 150, 206, 249, 254, 301, 361
FatI CATG 2 cut(s) 148, 247
Fnu4HI GCNGC 5 cut(s) 54, 57, 102, 138, 217
FokI GGATG 1 cut(s) 342
Fsp4HI GCNGC 5 cut(s) 54, 57, 102, 138, 217
FspBI CTAG 1 cut(s) 48
GluI GCNGC 5 cut(s) 54, 57, 102, 138, 217
Hin1II CATG 2 cut(s) 152, 251
HinfI GANTC 2 cut(s) 4, 179
HphI GGTGA 3 cut(s) 98, 188, 269
Hpy188I TCNGA 1 cut(s) 195
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 3 cut(s) 53, 333, 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 97
Hsp92II CATG 2 cut(s) 152, 251
Kzo9I GATC 2 cut(s) 36, 144
LpnPI CCDG 5 cut(s) 45, 69, 111, 127, 154
Lsp1109I GCAGC 4 cut(s) 43, 65, 113, 124
LweI GCATC 1 cut(s) 320
MaeI CTAG 1 cut(s) 48
MaeIII GTNAC 4 cut(s) 176, 275, 284, 373
MalI GATC 2 cut(s) 38, 146
MboI GATC 2 cut(s) 36, 144
MfeI CAATTG 1 cut(s) 334
MflI RGATCY 1 cut(s) 144
MluCI AATT 8 cut(s) 19, 43, 76, 185, 231, 255, 262, 334
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 1 cut(s) 397
MseI TTAA 4 cut(s) 12, 42, 156, 258
MspA1I CMGCKG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 142
MunI CAATTG 1 cut(s) 334
Mva1269I GAATGC 1 cut(s) 350
MvaI CCWGG 1 cut(s) 142
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 2 cut(s) 36, 144
NlaIII CATG 2 cut(s) 152, 251
NlaIV GGNNCC 1 cut(s) 146
NmuCI GTSAC 2 cut(s) 176, 275
PctI GAATGC 1 cut(s) 350
PkrI GCNGC 5 cut(s) 55, 58, 103, 139, 218
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 59
PsuI RGATCY 1 cut(s) 144
PvuII CAGCTG 1 cut(s) 56
SaqAI TTAA 4 cut(s) 12, 42, 156, 258
SatI GCNGC 5 cut(s) 54, 57, 102, 138, 217
Sau3AI GATC 2 cut(s) 36, 144
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 142
SetI ASST 6 cut(s) 18, 58, 127, 178, 243, 383
SfaNI GCATC 1 cut(s) 320
Sse9I AATT 8 cut(s) 19, 43, 76, 185, 231, 255, 262, 334
SsiI CCGC 1 cut(s) 217
SspI AATATT 1 cut(s) 163
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 140
TaaI ACNGT 1 cut(s) 275
TasI AATT 8 cut(s) 19, 43, 76, 185, 231, 255, 262, 334
TauI GCSGC 1 cut(s) 219
Tru1I TTAA 4 cut(s) 12, 42, 156, 258
Tru9I TTAA 4 cut(s) 12, 42, 156, 258
TscAI CASTG 2 cut(s) 88, 278
TseFI GTSAC 2 cut(s) 176, 275
TseI GCWGC 4 cut(s) 53, 56, 101, 137
Tsp45I GTSAC 2 cut(s) 176, 275
TspRI CASTG 2 cut(s) 88, 278
XapI RAATTY 3 cut(s) 19, 76, 262
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.