Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003371

Physical Location & Seq

Genomic Coordinates Reverse (-)

27445676 .. 27452654

Gene Structure 6979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0157400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGCCAACCTCCAATCCAAGTACATGGACGAAGATGAGGAAGAAGACGAACAATCAAAAACCACCACCATTGCCGCCGTCGCAATCACCGAGCTCGTTGGTTCTTATACATTTGTCGACCTAACAGGTTTTCTATTTGAGAAATCGAGATCATCTTGGAGAAAATTTGGAACCTGTGGATTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

62

Amino Acids

7.02

Weight (kDa)

4.41

Isoelectric Point (pI)

68.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06250 AT3G06250 AT3G06250 AT5G18960 AT5G18960
fragaria_vesca	FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102
malus_domestica	MD13G1179800.v1.1 MD16G1181100.v1.1
prunus_persica	Prupe.1G148400_v2.0.a1 Prupe.1G148400_v2.0.a1
pyrus_communis	pycom13g15530 pycom16g15190
rosa_chinensis	RchiOBHm_Chr4g0419141
rosa_laevigata	RLG00000007823
rosa_multiflora	Rmu_sc0001826.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362200
rosa_rugosa	Rorug04G0157200 Rorug04G0157300 Rorug04G0157400 Rorug04G0157500 Rorug04G0157600
rosa_samantha	Rh4AG219200 Rh4BG220500 Rh4CG231400 Rh4DG218000
rosa_wichuraiana	Rw4G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	164
AfaI	GTAC	1 cut(s)	23
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw21I	GWGCWC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	96
BceAI	ACGGC	1 cut(s)	62
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	149
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	69
BssMI	GATC	1 cut(s)	149
BstKTI	GATC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	149
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	51
BstXI	CCANNNNNNTGG	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	22
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviAII	CATG	1 cut(s)	25
CviJI	RGCY	2 cut(s)	5, 94
CviKI_1	RGCY	2 cut(s)	5, 94
CviQI	GTAC	1 cut(s)	22
DpnI	GATC	1 cut(s)	151
DpnII	GATC	1 cut(s)	149
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	1 cut(s)	28
FaiI	YATR	2 cut(s)	26, 108
FatI	CATG	1 cut(s)	24
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	75
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	147
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	149
LpnPI	CCDG	1 cut(s)	111
MalI	GATC	1 cut(s)	151
MboI	GATC	1 cut(s)	149
MboII	GAAGA	3 cut(s)	44, 53, 56
MhlI	GDGCHC	1 cut(s)	96
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	164
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	20, 31
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	1 cut(s)	149
NlaIII	CATG	1 cut(s)	28
NlaIV	GGNNCC	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	172
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SacI	GAGCTC	1 cut(s)	96
SalI	GTCGAC	1 cut(s)	116
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	5 cut(s)	12, 96, 123, 130, 176
SgeI	CNNG	7 cut(s)	31, 37, 103, 107, 138, 159, 168
Sse9I	AATT	1 cut(s)	164
SsiI	CCGC	1 cut(s)	75
SstI	GAGCTC	1 cut(s)	96
TaqI	TCGA	2 cut(s)	117, 146
TasI	AATT	1 cut(s)	164
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	1 cut(s)	77
XapI	RAATTY	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.