Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003371

Physical Location & Seq

Genomic Coordinates Reverse (-)

27457098 .. 27461250

Gene Structure 4153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0157500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3726 bp

ATGAGGCCTTTAACTTTTGAAAAATTATGCCCTCTCGTTTACTGCCTTTTCTTGTATGTTCACCTATTTTCATCACAAAACTACTTTCAACATTTTGCTTGTGCCGGTTCAACTACAGAAGCAGAGGCTCTTCTCCAATGGAAAGCCAGCTTTCGAAATCAAACCTCCCACAATAACCAGCTAAAGGATTGGATTTACCTTCCCAAGACTAATACCAATGCCACCAATTCTTCCAGCAACCGCAAAGCAAAGGCAAGCCCATGCATGTGGACTGGCATTTCATGCAATGGTGTTGGAAGTGTCACCAACATAACCATTGCCGGTTACGGTATACAAGGTATGCTACATGAATTTTCATTCTCATCCTTCCCCAATCTTGAATATCTTGATCTCAGCTTCAATAAACTCTTTGATGTCATCCCACCTCAAATCCGTTACCTCTCCAAACTCTACCATCTTGAACTCTCTAGTAATCAGCTCTCCGGGAGAATTCCACATGAAATTGGTCTGCTTAGAAATCTTACCACTCTCGATCTCAATTCAAATAACCTCTCTGGTTCAATTCCGACAACATTGGGTGATCTGACCAACCTTACCACTCTCTATCTCCATTCAAATAACCTCTCTGGCACCATTCCAAAAGAGTTGGGGAACCTGAAATCATTGGTGGATCTACAGTTGAGCACCAATCACCTCTCTGGTTCAATTCCGACAACATTTGGTGATCTGACCAACCTTACCACTCTCTATCTCGATTCAAATAACCTCTCCGGCACCATTCCGAAGGAGTTAGGGAACTCGAAATCTTTGGTGGTTCTAATGTTGAGCATCAATCAACATAGTGGTTCAATTCCGACAACATTAGGTGATCTTACCAACCTTACCACTCTCTATCTCCATTCAAATAACCTCTCTGGCACCATTCCAAAAGAGTTGGGGAACCTGAAATCATTGGTGGATTTAGCGTTGAGCACCAATCACCTCTCTGGTTCAATTCCGACAACATTGGGTGATCTGACCAACCTTACCACTCTCTATCTCCATTCAAATAACCTCTCTGGCACCATTCCAAAAGAGTTGGGGAACCTGAAATCATTGGTGGATTTAGCGTTGAGCACCAATCACCTCTCTGGTTCAATTTCGACAACATTGGGTGATCTAACCAACCTTACCACTCTCTATCTCCATTCAAATAACCTCTCTGGCACCATTCCAAAAGAGTTGGGGAACCTGAAATCATTGGTGGATCTACAGTTGAGCACCAATCACCTCTCTGGTTCAATTCCGACAACATTGGGTGATCTAACCAACCTTACCACTCTCTATCTCCATTCAAATAACCTCTCTGGCACCATTCCAAAAGAGTTGGGGAACCTGAAATCATTGGTGGATCTACAGTTGAGCACCAATCACCTCTCTGGTTCAATTCCGACAACATTGGGTGATCTGACCAACCTTACCACTCTCTATCTCGATTCAAATAACCTCTCTGGCACCATTCCAAAAGAGTTGGGGAACCTGAAATCATTGGTGGATCTAGAGTTGAGCACCAATCACCTCTCTGGTTCAATTCCGACAACATTGGGTGATCTGACCAACCTTACCGCTCTCTATCTCGATTCAAATAACCTTTCTGGCTCCATCCCTCAAAAGCTAGGCAATATCCAGAAATTGACAGAATTGGAATTAGGTACCAACCAATTTTCGGGTTATTTTCCACAAAACATTTGCCGAGCTAGATCTCTTATATACTTTTCAGCAGGCACCAACCATCTAACTGGCCCAATCCCAAAAAGCTTGAAAAATTGCACTAGCTTACTCAGAGTCCATCTTGAGGGGAACCAATTGACAGGCAACATATCTGAAGCCTTTGGTGTTTATCCGAGGCTTAATTTTATAGATGTGAGCAACAATCAACTTTATGGAGAAATCTCACAAAATTGGGCATTGTGTCCAAATTTAACAACCCTACGAATTGCTGGAAACAAACTTACTGGATCTATACCAGCTGAGATTGGAAATGCAACCCAAATTCATGAGTTGGATCTTTCATCAAATTGTTTAGTCGGGACAATTCCAAAGGAGTTTGGGGGATTAACTTCAATGTGGAAGCTACTGTTGGATGACAATCAACTTTCAGGTCGTGTCCCTTCGGAGTTTAAATCATTGACTGATCTAGAATATCTTGATCTCTCAGCCAACAATTTCAATGATTCAATTCCAAGTTTTGTAGGTGACTTTCTCAAGTTATATTACTTGAATTTGAGCAACAACAACTTCAGTCAAGAAATTCCATTTCAGTTGGGGAACTTAGTTCACCTGTCCCAACTAGATTTGAGTTTTAACACACTTAAAGGTCAGATAACATCAAATATTAGAAATATGCAGAGTCTGGAGATACTCAATATATCCCACAACAATCTTTCTGGTTTCATTCCAACAAGTATGGAAGACATGCATTGGCTAACTTATGTTGACGTATCCTACAATCACTTGGAAGGTCCAATTCCCAACATCAAAGCATTTCAGGCTGCTCCTCAAGAAGCACTGCAAGGGAACAAGGACCTCTGTGGCAACTCAAGTTTTTTGCATCCGTGCAATAAACAAATCCCAAAAAGGGACGATAAATTCGTATTTCTGATAATCTTCCTTATTCTTGGAGCACTTGCACTTCTAGCCTCTATATTTGCATTGGTGGCAAAAAGGAAAAAGAAGCAACAACATGGAGAAAAAACCAACATGAACGAAGAAATTTCTTTTTCAATATTAAAGTTTGATGGAAAGACAATGTATGAGGAAATTGTAAGGGCAACAGAAGATTTTCATTCCAAGTATTGCATAGGGAAGGGAGCACAGGGAAATGTCTACAAAGCAACTTTGTCATCCACGTTCATAGTGGCCGTGAAGAAACTCCACCTCCTAAGCGATGAAGTCAAGAACTTTCAGAAGGAATTCTTAAATGAAATAAAGGCCCTAACTCAGATACGACACCGAAACATTGTGAAGCTTGTTGGTTTTTGTTCACATAAACTACACTCATTCCTGGTGTATGAGTATCTGGAAAGGGGCAGCTTGGCTACAATGTTGAGCAAAGATGATGAAGCTAGAGAATTGGGGTGGAGTAAACGAGTGAATATTGTGGAAGGTGTAGCTAGTGCCATGTGTTACATGCACCACCATTGCCTGCCACCAATTGTGCACCGGGACATATCGAGCAAGAACATTTTGCTGGATGCTGAATATAAGGCATATGTTTCTGACTTTGGCACTGTGAAGTCGTTGAACCCAGACTCAACTAACTGGACTGCCTTTGCAGGCACATGTGGATATATTGCCCCAGAGCTTGCTTATACAATGGAAGTAACTGAGAAGTGTGATGTTTATAGCTTTGGAGTGGTGACATTGGAAATAATTATGGGAAGACATCCAGGAGACCTTCTGTCATCTTTATCATCAGGATCAGCCTCATCAACTGCATTACCTACCATTGAAATGCCAATTGTGGATGTTTTAGACCAACGCATATCCCCTCCCACTCGTCAAGTTATAGGGGAAGTGCTCTCTATTGTGAAGATAGCATTTTCATGCATGAATTCCAATCCTCAATCTCGTCCAACAATGAAACTGGTTTCTCAACAATTGGAAACTCAAAGGCTGCATTTGTCGAAGCCATTACGTATGATAACATGTGGTGAATTGCTTGCTCTCAATGGTTTGACTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

1241

Amino Acids

136.35

Weight (kDa)

6.45

Isoelectric Point (pI)

23.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	104 - 206	1.1e-08	Leucine-rich repeat region
LRR_8	PF13855	115 - 160	3.6e-06	Leucine rich repeat
LRR_8	PF13855	172 - 232	3.6e-08	Leucine rich repeat
LRR_14	PF23598	211 - 301	1.2e-09	Leucine-rich repeat region
LRR_14	PF23598	306 - 397	4.6e-10	Leucine-rich repeat region
LRR_14	PF23598	399 - 493	6.3e-10	Leucine-rich repeat region
LRR_8	PF13855	461 - 520	5.5e-06	Leucine rich repeat
LRR_8	PF13855	484 - 544	6.3e-08	Leucine rich repeat
LRR_14	PF23598	498 - 659	9.4e-08	Leucine-rich repeat region
LRR_8	PF13855	652 - 712	3.1e-07	Leucine rich repeat
LRR_8	PF13855	773 - 832	4.4e-08	Leucine rich repeat
Pkinase	PF00069	942 - 1211	1.8e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	946 - 1214	4e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06250 AT3G06250 AT3G06250 AT5G18960 AT5G18960
fragaria_vesca	FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102
malus_domestica	MD13G1179800.v1.1 MD16G1181100.v1.1
prunus_persica	Prupe.1G148400_v2.0.a1 Prupe.1G148400_v2.0.a1
pyrus_communis	pycom13g15530 pycom16g15190
rosa_chinensis	RchiOBHm_Chr4g0419141
rosa_laevigata	RLG00000007823
rosa_multiflora	Rmu_sc0001826.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362200
rosa_rugosa	Rorug04G0157200 Rorug04G0157300 Rorug04G0157400 Rorug04G0157500 Rorug04G0157600
rosa_samantha	Rh4AG219200 Rh4BG220500 Rh4CG231400 Rh4DG218000
rosa_wichuraiana	Rw4G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1691
AccB1I	GGYRCC	9 cut(s)	629, 773, 917, 1061, 1205, 1349, 1493, 1691, 1763
AccBSI	CCGCTC	1 cut(s)	1607
AccI	GTMKAC	2 cut(s)	331, 2865
AciI	CCGC	2 cut(s)	241, 1605
AclWI	GGATC	7 cut(s)	678, 1254, 1398, 1542, 2005, 2052, 3466
AcoI	YGGCCR	1 cut(s)	2898
AcuI	CTGAAG	2 cut(s)	1884, 2263
AfaI	GTAC	1 cut(s)	1693
AfiI	CCNNNNNNNGG	4 cut(s)	184, 1705, 1834, 2617
AflIII	ACRYGT	2 cut(s)	3320, 3686
AhdI	GACNNNNNGTC	1 cut(s)	3439
AjnI	CCWGG	2 cut(s)	3042, 3427
AjuI	GAANNNNNNNTTGG	2 cut(s)	2102, 2134
Alw26I	GTCTC	1 cut(s)	3426
Alw44I	GTGCAC	1 cut(s)	3197
AlwI	GGATC	7 cut(s)	678, 1254, 1398, 1542, 2005, 2052, 3466
AlwNI	CAGNNNCTG	1 cut(s)	2392
AoxI	GGCC	4 cut(s)	5, 1780, 2898, 2970
ApaLI	GTGCAC	1 cut(s)	3197
ApeKI	GCWGC	3 cut(s)	2531, 3069, 3655
ArsI	GACNNNNNNTTYG	2 cut(s)	2612, 2644
Asp700I	GAANNNNTTC	2 cut(s)	2820, 2951
Asp718I	GGTACC	1 cut(s)	1691
AspS9I	GGNCC	4 cut(s)	1781, 2501, 2563, 2971
AsuC2I	CCSGG	2 cut(s)	484, 3203
AsuII	TTCGAA	1 cut(s)	154
AvaII	GGWCC	2 cut(s)	2501, 2563
BaeGI	GKGCMC	1 cut(s)	3201
BanI	GGYRCC	9 cut(s)	629, 773, 917, 1061, 1205, 1349, 1493, 1691, 1763
BbsI	GAAGAC	2 cut(s)	2457, 3427
BbvI	GCAGC	3 cut(s)	2518, 3081, 3642
BccI	CCATC	5 cut(s)	462, 1649, 1779, 1836, 2771
BceAI	ACGGC	1 cut(s)	2885
BciT130I	CCWGG	2 cut(s)	3044, 3429
BciVI	GTATCC	1 cut(s)	2491
BcnI	CCSGG	2 cut(s)	484, 3203
BcoDI	GTCTC	1 cut(s)	3426
BfmI	CTRYAG	4 cut(s)	114, 674, 1250, 1394
BfuI	GTATCC	1 cut(s)	2491
BglII	AGATCT	1 cut(s)	1739
BisI	GCNGC	3 cut(s)	2532, 3070, 3656
BlsI	GCNGC	3 cut(s)	2533, 3071, 3657
Bme1390I	CCNGG	4 cut(s)	484, 3044, 3203, 3429
Bme18I	GGWCC	2 cut(s)	2501, 2563
BmeRI	GACNNNNNGTC	1 cut(s)	3439
BmgT120I	GGNCC	4 cut(s)	1781, 2501, 2563, 2971
BmrFI	CCNGG	4 cut(s)	484, 3044, 3203, 3429
BmsI	GCATC	3 cut(s)	837, 2599, 3223
BpiI	GAAGAC	2 cut(s)	2457, 3427
BpmI	CTGGAG	1 cut(s)	2414
Bpu10I	CCTNAGC	1 cut(s)	2921
Bpu14I	TTCGAA	1 cut(s)	154
BpuEI	CTTGAG	4 cut(s)	1853, 2228, 2523, 2563
BpuMI	CCSGG	2 cut(s)	484, 3203
BsaAI	YACGTR	1 cut(s)	3677
BsaBI	GATNNNNATC	1 cut(s)	2127
BsaI	GGTCTC	1 cut(s)	3426
BsaJI	CCNNGG	1 cut(s)	1883
BsaXI	ACNNNNNCTCC	2 cut(s)	2901, 2931
Bsc4I	CCNNNNNNNGG	4 cut(s)	184, 1705, 1834, 2617
Bse118I	RCCGGY	2 cut(s)	104, 320
Bse1I	ACTGG	5 cut(s)	277, 1783, 1999, 3305, 3630
Bse3DI	GCAATG	3 cut(s)	292, 315, 3178
Bse8I	GATNNNNATC	1 cut(s)	2127
BseBI	CCWGG	2 cut(s)	3044, 3429
BseDI	CCNNGG	1 cut(s)	1883
BseGI	GGATG	9 cut(s)	362, 417, 1641, 2128, 2590, 2882, 3238, 3424, 3511
BseJI	GATNNNNATC	1 cut(s)	2127
BseLI	CCNNNNNNNGG	4 cut(s)	184, 1705, 1834, 2617
BseMI	GCAATG	3 cut(s)	292, 315, 3178
BseMII	CTCAG	6 cut(s)	406, 1834, 2001, 2208, 2993, 3357
BseNI	ACTGG	5 cut(s)	277, 1783, 1999, 3305, 3630
BseRI	GAGGAG	1 cut(s)	2526
BseSI	GKGCMC	1 cut(s)	3201
BseXI	GCAGC	3 cut(s)	2518, 3081, 3642
BshFI	GGCC	4 cut(s)	7, 1782, 2900, 2972
BshNI	GGYRCC	9 cut(s)	629, 773, 917, 1061, 1205, 1349, 1493, 1691, 1763
BsiSI	CCGG	5 cut(s)	105, 321, 483, 771, 3202
BslFI	GGGAC	5 cut(s)	2083, 2132, 2308, 2633, 3218
BslI	CCNNNNNNNGG	4 cut(s)	184, 1705, 1834, 2617
BsmAI	GTCTC	1 cut(s)	3426
BsmFI	GGGAC	5 cut(s)	2083, 2132, 2308, 2633, 3218
BsnI	GGCC	4 cut(s)	7, 1782, 2900, 2972
Bso31I	GGTCTC	1 cut(s)	3426
Bsp119I	TTCGAA	1 cut(s)	154
BspACI	CCGC	2 cut(s)	241, 1605
BspANI	GGCC	4 cut(s)	7, 1782, 2900, 2972
BspCNI	CTCAG	6 cut(s)	405, 1833, 2002, 2207, 2992, 3358
BspHI	TCATGA	1 cut(s)	2035
BspPI	GGATC	7 cut(s)	678, 1254, 1398, 1542, 2005, 2052, 3466
BspQI	GCTCTTC	1 cut(s)	135
BspT104I	TTCGAA	1 cut(s)	154
BspT107I	GGYRCC	9 cut(s)	629, 773, 917, 1061, 1205, 1349, 1493, 1691, 1763
BspTNI	GGTCTC	1 cut(s)	3426
BsrBI	CCGCTC	1 cut(s)	1607
BsrDI	GCAATG	3 cut(s)	292, 315, 3178
BsrFI	RCCGGY	2 cut(s)	104, 320
BsrI	ACTGG	5 cut(s)	277, 1783, 1999, 3305, 3630
BssAI	RCCGGY	2 cut(s)	104, 320
BssECI	CCNNGG	1 cut(s)	1883
BssNAI	GTATAC	1 cut(s)	332
Bst1107I	GTATAC	1 cut(s)	332
Bst2UI	CCWGG	2 cut(s)	3044, 3429
Bst4CI	ACNGT	6 cut(s)	329, 678, 1254, 1398, 2118, 3271
Bst6I	CTCTTC	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	282
BstBAI	YACGTR	1 cut(s)	3677
BstBI	TTCGAA	1 cut(s)	154
BstC8I	GCNNGC	7 cut(s)	148, 256, 1762, 3185, 3316, 3345, 3702
BstDEI	CTNAG	9 cut(s)	392, 512, 1820, 2010, 2194, 2311, 2921, 2979, 3366
BstF5I	GGATG	9 cut(s)	362, 417, 1641, 2128, 2590, 2882, 3238, 3424, 3511
BstMAI	GTCTC	1 cut(s)	3426
BstMWI	GCNNNNNNNGC	4 cut(s)	282, 2528, 2675, 2696
BstNI	CCWGG	2 cut(s)	3044, 3429
BstNSI	RCATGY	5 cut(s)	268, 2458, 3172, 3324, 3690
BstSCI	CCNGG	4 cut(s)	482, 3042, 3201, 3427
BstSFI	CTRYAG	4 cut(s)	114, 674, 1250, 1394
BstSLI	GKGCMC	1 cut(s)	3201
BstSNI	TACGTA	1 cut(s)	3677
BstV1I	GCAGC	3 cut(s)	2518, 3081, 3642
BstV2I	GAAGAC	2 cut(s)	2457, 3427
BstX2I	RGATCY	7 cut(s)	670, 1246, 1390, 1534, 1739, 1997, 2044
BstXI	CCANNNNNNTGG	2 cut(s)	267, 1778
BstYI	RGATCY	7 cut(s)	670, 1246, 1390, 1534, 1739, 1997, 2044
BstZ17I	GTATAC	1 cut(s)	332
BsuI	GTATCC	1 cut(s)	2491
BsuRI	GGCC	4 cut(s)	7, 1782, 2900, 2972
BtgZI	GCGATG	1 cut(s)	2940
BtsCI	GGATG	9 cut(s)	362, 417, 1641, 2128, 2590, 2882, 3238, 3424, 3511
BtsI	GCAGTG	1 cut(s)	2546
BtsIMutI	CAGTG	2 cut(s)	2546, 3267
Cac8I	GCNNGC	7 cut(s)	148, 256, 1762, 3185, 3316, 3345, 3702
CaiI	CAGNNNCTG	1 cut(s)	2392
CciI	TCATGA	1 cut(s)	2035
Cfr10I	RCCGGY	2 cut(s)	104, 320
Cfr13I	GGNCC	4 cut(s)	1781, 2501, 2563, 2971
Csp6I	GTAC	1 cut(s)	1692
CviQI	GTAC	1 cut(s)	1692
DdeI	CTNAG	9 cut(s)	392, 512, 1820, 2010, 2194, 2311, 2921, 2979, 3366
DraI	TTTAAA	1 cut(s)	2161
DriI	GACNNNNNGTC	1 cut(s)	3439
EaeI	YGGCCR	1 cut(s)	2898
Eam1104I	CTCTTC	1 cut(s)	135
Eam1105I	GACNNNNNGTC	1 cut(s)	3439
EarI	CTCTTC	1 cut(s)	135
Eco105I	TACGTA	1 cut(s)	3677
Eco147I	AGGCCT	1 cut(s)	7
Eco31I	GGTCTC	1 cut(s)	3426
Eco47I	GGWCC	2 cut(s)	2501, 2563
Eco57I	CTGAAG	2 cut(s)	1884, 2263
EcoO109I	RGGNCCY	2 cut(s)	2563, 2971
EcoRI	GAATTC	3 cut(s)	489, 2951, 3592
EcoRII	CCWGG	2 cut(s)	3042, 3427
EcoT22I	ATGCAT	3 cut(s)	266, 2460, 3590
FalI	AAGNNNNNCTT	2 cut(s)	2939, 2971
FaqI	GGGAC	5 cut(s)	2083, 2132, 2308, 2633, 3218
FauNDI	CATATG	1 cut(s)	3250
FblI	GTMKAC	2 cut(s)	331, 2865
Fnu4HI	GCNGC	3 cut(s)	2532, 3070, 3656
FokI	GGATG	9 cut(s)	349, 404, 1628, 2135, 2577, 2869, 3245, 3411, 3518
Fsp4HI	GCNGC	3 cut(s)	2532, 3070, 3656
GluI	GCNGC	3 cut(s)	2532, 3070, 3656
GsuI	CTGGAG	1 cut(s)	2414
HaeIII	GGCC	4 cut(s)	7, 1782, 2900, 2972
HapII	CCGG	5 cut(s)	105, 321, 483, 771, 3202
HincII	GTYRAC	1 cut(s)	2476
HindII	GTYRAC	1 cut(s)	2476
HindIII	AAGCTT	2 cut(s)	1795, 3005
HinfI	GANTC	7 cut(s)	755, 1475, 1619, 1824, 2213, 2389, 3290
HpaII	CCGG	5 cut(s)	105, 321, 483, 771, 3202
HpyAV	CCTTC	9 cut(s)	209, 376, 778, 2160, 2492, 2839, 2941, 3137, 3446
HpyCH4III	ACNGT	6 cut(s)	329, 678, 1254, 1398, 2118, 3271
HpyCH4IV	ACGT	3 cut(s)	2478, 2888, 3676
HpyF10VI	GCNNNNNNNGC	4 cut(s)	282, 2528, 2675, 2696
HpyF3I	CTNAG	9 cut(s)	392, 512, 1820, 2010, 2194, 2311, 2921, 2979, 3366
HpySE526I	ACGT	3 cut(s)	2478, 2888, 3676
KpnI	GGTACC	1 cut(s)	1695
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	4 cut(s)	1643, 2539, 2660, 2849
Lsp1109I	GCAGC	3 cut(s)	2518, 3081, 3642
LweI	GCATC	3 cut(s)	837, 2599, 3223
MaeII	ACGT	3 cut(s)	2478, 2888, 3676
MaeIII	GTNAC	7 cut(s)	301, 323, 434, 2234, 3164, 3361, 3397
MbiI	CCGCTC	1 cut(s)	1607
MboII	GAAGA	9 cut(s)	122, 222, 2462, 2638, 2759, 2828, 2917, 3432, 3583
MfeI	CAATTG	4 cut(s)	1844, 3192, 3498, 3638
MflI	RGATCY	7 cut(s)	670, 1246, 1390, 1534, 1739, 1997, 2044
MlyI	GAGTC	3 cut(s)	1833, 2398, 3284
Mph1103I	ATGCAT	3 cut(s)	266, 2460, 3590
MroXI	GAANNNNTTC	2 cut(s)	2820, 2951
MseI	TTAA	9 cut(s)	11, 1890, 1961, 2096, 2160, 2343, 2352, 2768, 2957
MslI	CAYNNNNRTG	3 cut(s)	265, 3491, 3583
MspA1I	CMGCKG	1 cut(s)	2009
MspI	CCGG	5 cut(s)	105, 321, 483, 771, 3202
MspR9I	CCNGG	4 cut(s)	484, 3044, 3203, 3429
MunI	CAATTG	4 cut(s)	1844, 3192, 3498, 3638
MvaI	CCWGG	2 cut(s)	3044, 3429
MwoI	GCNNNNNNNGC	4 cut(s)	282, 2528, 2675, 2696
NciI	CCSGG	2 cut(s)	484, 3203
NdeI	CATATG	1 cut(s)	3250
NmeAIII	GCCGAG	1 cut(s)	1757
NmuCI	GTSAC	3 cut(s)	301, 2234, 3397
NsiI	ATGCAT	3 cut(s)	266, 2460, 3590
NspI	RCATGY	5 cut(s)	268, 2458, 3172, 3324, 3690
NspV	TTCGAA	1 cut(s)	154
PagI	TCATGA	1 cut(s)	2035
PceI	AGGCCT	1 cut(s)	7
PciI	ACATGT	2 cut(s)	3320, 3686
PciSI	GCTCTTC	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	2628
PdmI	GAANNNNTTC	2 cut(s)	2820, 2951
PfeI	GAWTC	4 cut(s)	755, 1475, 1619, 2213
PfoI	TCCNGGA	2 cut(s)	482, 3427
PkrI	GCNGC	3 cut(s)	2533, 3071, 3657
PleI	GAGTC	3 cut(s)	1832, 2397, 3284
PpsI	GAGTC	3 cut(s)	1832, 2397, 3284
Ppu21I	YACGTR	1 cut(s)	3677
PpuMI	RGGWCCY	1 cut(s)	2563
PscI	ACATGT	2 cut(s)	3320, 3686
Psp5II	RGGWCCY	1 cut(s)	2563
Psp6I	CCWGG	2 cut(s)	3042, 3427
PspGI	CCWGG	2 cut(s)	3042, 3427
PspPI	GGNCC	4 cut(s)	1781, 2501, 2563, 2971
PspPPI	RGGWCCY	1 cut(s)	2563
PstNI	CAGNNNCTG	1 cut(s)	2392
PsuI	RGATCY	7 cut(s)	670, 1246, 1390, 1534, 1739, 1997, 2044
PvuII	CAGCTG	1 cut(s)	2009
RsaI	GTAC	1 cut(s)	1693
RsaNI	GTAC	1 cut(s)	1692
RseI	CAYNNNNRTG	3 cut(s)	265, 3491, 3583
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	9 cut(s)	11, 1890, 1961, 2096, 2160, 2343, 2352, 2768, 2957
SatI	GCNGC	3 cut(s)	2532, 3070, 3656
Sau96I	GGNCC	4 cut(s)	1781, 2501, 2563, 2971
SchI	GAGTC	3 cut(s)	1833, 2398, 3284
ScrFI	CCNGG	4 cut(s)	484, 3044, 3203, 3429
SfaNI	GCATC	3 cut(s)	837, 2599, 3223
SfcI	CTRYAG	4 cut(s)	114, 674, 1250, 1394
SfuI	TTCGAA	1 cut(s)	154
SinI	GGWCC	2 cut(s)	2501, 2563
SmiMI	CAYNNNNRTG	3 cut(s)	265, 3491, 3583
SmlI	CTYRAG	4 cut(s)	1832, 2243, 2538, 2578
SmoI	CTYRAG	4 cut(s)	1832, 2243, 2538, 2578
SnaBI	TACGTA	1 cut(s)	3677
SseBI	AGGCCT	1 cut(s)	7
SsiI	CCGC	2 cut(s)	241, 1605
SspI	AATATT	3 cut(s)	2374, 2766, 3136
StuI	AGGCCT	1 cut(s)	7
StyD4I	CCNGG	4 cut(s)	482, 3042, 3201, 3427
TaaI	ACNGT	6 cut(s)	329, 678, 1254, 1398, 2118, 3271
TaiI	ACGT	3 cut(s)	2481, 2891, 3679
TaqI	TCGA	9 cut(s)	154, 531, 753, 800, 1142, 1473, 1617, 3212, 3665
TfiI	GAWTC	4 cut(s)	755, 1475, 1619, 2213
Tru1I	TTAA	9 cut(s)	11, 1890, 1961, 2096, 2160, 2343, 2352, 2768, 2957
Tru9I	TTAA	9 cut(s)	11, 1890, 1961, 2096, 2160, 2343, 2352, 2768, 2957
TscAI	CASTG	2 cut(s)	2553, 3274
TseFI	GTSAC	3 cut(s)	301, 2234, 3397
TseI	GCWGC	3 cut(s)	2531, 3069, 3655
Tsp45I	GTSAC	3 cut(s)	301, 2234, 3397
TspGWI	ACGGA	2 cut(s)	422, 2583
TspRI	CASTG	2 cut(s)	2553, 3274
VneI	GTGCAC	1 cut(s)	3197
VpaK11BI	GGWCC	2 cut(s)	2501, 2563
XbaI	TCTAGA	2 cut(s)	1537, 2176
XceI	RCATGY	5 cut(s)	268, 2458, 3172, 3324, 3690
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2893
XmiI	GTMKAC	2 cut(s)	331, 2865
XmnI	GAANNNNTTC	2 cut(s)	2820, 2951
Zsp2I	ATGCAT	3 cut(s)	266, 2460, 3590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.