pycom13g15530

Protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
11320350 .. 11322263
1914 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g15530.1

Sequence Viewer

Length: 1509 bp
ATGGGCATGGAATCCAGCTCCACCCACTTCACAAATATCAGAAGCTTAGATACCGATTCTAAGATTGAAGACAGTGGGAACAACTTAGTTATAGAGGCATATCCTTTAGGAATGATGCCTCCGATGAATGCTGTCGATGCAGAGGATGAAGGAGAGTCTGGAGTACCGGAACCATATGTGGGGTTAGACTTTGATTCAGCAGATGTTGCCCGTGATTTTTACACTTTCTATGCAGCACGGATGGGGTTTAAAGTTCGAACTGGTCAGTTGTATCGCTCAAGAACAGATGGGTCAGTTTCTTCTCGAAGATTTGTGTGCTCCAAGGAAGGATTTCAGATTAGTTCACGGACAGGCTGTCCAGCATTAATCAGGGTGCAGAGACGCGATTCTGGGAAATGGGTTGTAGACCTTTTCCTGAAGGATCACAATCATGGTCTTGAATCATCTACAGAGGAAAATCATAACCTGATTTTGCAGAAGAAGAGTTCCATGCCGACAAATACTGTTGTTGAAGTGTCTCATAGGCCAAAAGTCAAATTGATTAAGGCAATTGAGGATAAACCACATTGCCCATCTGCAGTTATAAGTGCCAAGCGCTTAAAACGGGGTGGAGAGGAAATGCAGTCAGAAATTGATCTATCTGCAGGTCTAGAGTTCAATTCGGCCAATGAAGCATACCAATTTTATCATGCGTATGCTGAGAATACAGGATTTAGAATCAGGATTGGTCAATTGTTTCGTTCAAAGCTTGATGGGTCAATTACATCTCGGAGATTTGTGTGCTCAAAGGAAGGGTTTCAGCATCCATCAAGAGTTGGTTGTGGGGCATATATGAGGATTAAGAGACAAGATTCTGGAAGGTGGGTAGTGGACCGTTTTGATAAAAATCATAACCATGAGTTTGAGTCTCACCTGGAAGTTCAAAAGAAAAATCTATTTTCTTCAAAAAAGTTCATAGAAGAGGAGATTGGAGGGCTGGAAATTGAAGATATTGTTGACATAAACAGTGGAAACCTTGTCAAAAGACGAAGAGAAAATCACGTTGGAAGCGATTGGTACGGTGTGCTGTTTGACTATTGTCAAACCAGACAGGCCGAAGATACAGGATTCTTCTATGCAGTAGAAGTTGATAATGGTAGTTGCATGAGTATTTTCTGGGCTGATGGGAGGTCTAGGTTTTCATGCAGCCAGTTTGGTGATGCCATTATTTTAGACACCTCATATCGGAAAAGTATTTATCTGGTGCCATTTGTCACTTTCATTGGAATCAACCACCACAAGCAACCAGTGCTTCTTGGTTGTGCCCTGGTTGCTGATGAATCTGAGAAATCTTTTACTTGGTTGTTTCAAACATGGCTTAGGGCAATGTCAGGGCGTCGTCCTCTGTCAATAATAGCCGACCAAGATGATATGATCCAGCAAGCCATCATGCAAGTTTTTCCAGGAACCCATCATCGTTTCTCATTGTGGCAAAATTTCTTCAGGATCGATCAAGGCAAAAGAAAGTGA

Protein Analysis

503

Amino Acids

57.25

Weight (kDa)

6.97

Isoelectric Point (pI)

57.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 72 - 146 2.1e-18 FAR1 DNA-binding domain
FAR1 PF03101 227 - 301 2.6e-19 FAR1 DNA-binding domain
MULE PF10551 402 - 490 5.2e-25 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 584
Acc36I ACCTGC 1 cut(s) 635
AccB1I GGYRCC 1 cut(s) 1243
AccI GTMKAC 1 cut(s) 405
AccII CGCG 1 cut(s) 384
AclWI GGATC 3 cut(s) 429, 1408, 1493
AcoI YGGCCR 1 cut(s) 663
AcsI RAATTY 1 cut(s) 1474
AcuI CTGAAG 2 cut(s) 437, 1465
AcyI GRCGYC 1 cut(s) 1375
AfaI GTAC 2 cut(s) 165, 1058
AfeI AGCGCT 1 cut(s) 596
AfiI CCNNNNNNNGG 2 cut(s) 179, 1224
AgsI TTSAA 9 cut(s) 68, 440, 512, 658, 744, 923, 945, 986, 1349
AhdI GACNNNNNGTC 1 cut(s) 354
AjnI CCWGG 3 cut(s) 912, 1305, 1441
AjuI GAANNNNNNNTTGG 4 cut(s) 951, 983, 1026, 1058
AluBI AGCT 3 cut(s) 18, 45, 748
AluI AGCT 3 cut(s) 18, 45, 748
Alw21I GWGCWC 2 cut(s) 320, 785
Alw26I GTCTC 4 cut(s) 373, 522, 838, 912
AlwI GGATC 3 cut(s) 429, 1408, 1493
Aor51HI AGCGCT 1 cut(s) 596
AoxI GGCC 3 cut(s) 524, 663, 1092
ApeKI GCWGC 2 cut(s) 233, 1185
ApoI RAATTY 1 cut(s) 1474
AseI ATTAAT 1 cut(s) 365
Asp700I GAANNNNTTC 2 cut(s) 330, 795
AspLEI GCGC 1 cut(s) 597
AspS9I GGNCC 1 cut(s) 871
AsuHPI GGTGA 2 cut(s) 902, 1208
AsuII TTCGAA 1 cut(s) 256
AvaII GGWCC 1 cut(s) 871
BaeGI GKGCMC 1 cut(s) 1306
BanI GGYRCC 1 cut(s) 1243
BarI GAAGNNNNNNTAC 2 cut(s) 34, 66
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 2 cut(s) 320, 785
BbvI GCAGC 2 cut(s) 245, 1197
BccI CCATC 8 cut(s) 235, 281, 580, 746, 814, 1157, 1433, 1458
BciT130I CCWGG 3 cut(s) 914, 1307, 1443
BcoDI GTCTC 4 cut(s) 373, 522, 838, 912
BfaI CTAG 2 cut(s) 650, 1173
BfmI CTRYAG 3 cut(s) 447, 576, 642
BfoI RGCGCY 1 cut(s) 598
BfuAI ACCTGC 1 cut(s) 635
BisI GCNGC 2 cut(s) 234, 1186
BlsI GCNGC 2 cut(s) 235, 1187
Bme1390I CCNGG 3 cut(s) 914, 1307, 1443
Bme18I GGWCC 1 cut(s) 871
BmeRI GACNNNNNGTC 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 871
BmiI GGNNCC 3 cut(s) 171, 1245, 1447
BmrFI CCNGG 3 cut(s) 914, 1307, 1443
BmsI GCATC 4 cut(s) 105, 127, 811, 1189
BoxI GACNNNNGTC 1 cut(s) 1077
BpiI GAAGAC 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 1358
Bpu14I TTCGAA 1 cut(s) 256
BpuEI CTTGAG 1 cut(s) 262
Bsa29I ATCGAT 1 cut(s) 1488
BsaBI GATNNNNATC 2 cut(s) 426, 885
BsaHI GRCGYC 1 cut(s) 1375
BsaJI CCNNGG 2 cut(s) 321, 1305
BsaWI WCCGGW 1 cut(s) 166
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 1224
Bse1I ACTGG 3 cut(s) 265, 1189, 1286
Bse3DI GCAATG 2 cut(s) 565, 1371
Bse8I GATNNNNATC 2 cut(s) 426, 885
BseBI CCWGG 3 cut(s) 914, 1307, 1443
BseCI ATCGAT 1 cut(s) 1488
BseDI CCNNGG 2 cut(s) 321, 1305
BseGI GGATG 3 cut(s) 151, 246, 802
BseJI GATNNNNATC 2 cut(s) 426, 885
BseLI CCNNNNNNNGG 2 cut(s) 179, 1224
BseMI GCAATG 2 cut(s) 565, 1371
BseMII CTCAG 2 cut(s) 690, 1314
BseNI ACTGG 3 cut(s) 265, 1189, 1286
BseRI GAGGAG 1 cut(s) 977
BseSI GKGCMC 1 cut(s) 1306
BseXI GCAGC 2 cut(s) 245, 1197
BsgI GTGCAG 1 cut(s) 395
Bsh1236I CGCG 1 cut(s) 384
BshFI GGCC 3 cut(s) 526, 665, 1094
BshNI GGYRCC 1 cut(s) 1243
BshVI ATCGAT 1 cut(s) 1488
BsiHKAI GWGCWC 2 cut(s) 320, 785
BsiSI CCGG 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 179, 1224
BsmAI GTCTC 4 cut(s) 373, 522, 838, 912
BsmBI CGTCTC 1 cut(s) 373
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 3 cut(s) 526, 665, 1094
Bsp119I TTCGAA 1 cut(s) 256
Bsp1286I GDGCHC 3 cut(s) 320, 785, 1306
Bsp143I GATC 5 cut(s) 421, 634, 1413, 1485, 1489
BspANI GGCC 3 cut(s) 526, 665, 1094
BspCNI CTCAG 2 cut(s) 691, 1315
BspDI ATCGAT 1 cut(s) 1488
BspFNI CGCG 1 cut(s) 384
BspLI GGNNCC 3 cut(s) 171, 1245, 1447
BspMAI CTGCAG 2 cut(s) 580, 646
BspMI ACCTGC 1 cut(s) 635
BspPI GGATC 3 cut(s) 429, 1408, 1493
BspT104I TTCGAA 1 cut(s) 256
BspT107I GGYRCC 1 cut(s) 1243
BsrDI GCAATG 2 cut(s) 565, 1371
BsrI ACTGG 3 cut(s) 265, 1189, 1286
BssECI CCNNGG 2 cut(s) 321, 1305
BssMI GATC 5 cut(s) 421, 634, 1413, 1485, 1489
BssNI GRCGYC 1 cut(s) 1375
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 3 cut(s) 914, 1307, 1443
Bst4CI ACNGT 5 cut(s) 74, 505, 875, 1007, 1061
Bst6I CTCTTC 3 cut(s) 476, 954, 1024
BstACI GRCGYC 1 cut(s) 1375
BstAPI GCANNNNNTGC 2 cut(s) 206, 1288
BstBI TTCGAA 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 1422
BstDEI CTNAG 6 cut(s) 46, 60, 85, 699, 1323, 1358
BstF5I GGATG 3 cut(s) 151, 246, 802
BstFNI CGCG 1 cut(s) 384
BstH2I RGCGCY 1 cut(s) 598
BstHHI GCGC 1 cut(s) 597
BstKTI GATC 5 cut(s) 424, 637, 1416, 1488, 1492
BstMAI GTCTC 4 cut(s) 373, 522, 838, 912
BstMBI GATC 5 cut(s) 421, 634, 1413, 1485, 1489
BstMWI GCNNNNNNNGC 5 cut(s) 137, 206, 671, 1288, 1310
BstNI CCWGG 3 cut(s) 914, 1307, 1443
BstPAI GACNNNNGTC 1 cut(s) 1077
BstSCI CCNGG 3 cut(s) 912, 1305, 1441
BstSFI CTRYAG 3 cut(s) 447, 576, 642
BstSLI GKGCMC 1 cut(s) 1306
BstUI CGCG 1 cut(s) 384
BstV1I GCAGC 2 cut(s) 245, 1197
BstV2I GAAGAC 1 cut(s) 75
Bsu15I ATCGAT 1 cut(s) 1488
BsuRI GGCC 3 cut(s) 526, 665, 1094
BsuTUI ATCGAT 1 cut(s) 1488
BtsCI GGATG 3 cut(s) 151, 246, 802
BtsIMutI CAGTG 3 cut(s) 79, 1012, 1293
BveI ACCTGC 1 cut(s) 635
Cac8I GCNNGC 1 cut(s) 1422
CfoI GCGC 1 cut(s) 597
Cfr13I GGNCC 1 cut(s) 871
ClaI ATCGAT 1 cut(s) 1488
CseI GACGC 2 cut(s) 390, 1364
Csp6I GTAC 2 cut(s) 164, 1057
CviAII CATG 9 cut(s) 7, 431, 490, 689, 896, 1144, 1182, 1353, 1429
CviQI GTAC 2 cut(s) 164, 1057
DdeI CTNAG 6 cut(s) 46, 60, 85, 699, 1323, 1358
DpnI GATC 5 cut(s) 423, 636, 1415, 1487, 1491
DpnII GATC 5 cut(s) 421, 634, 1413, 1485, 1489
DraI TTTAAA 1 cut(s) 250
DriI GACNNNNNGTC 1 cut(s) 354
EaeI YGGCCR 1 cut(s) 663
Eam1104I CTCTTC 3 cut(s) 476, 954, 1024
Eam1105I GACNNNNNGTC 1 cut(s) 354
EarI CTCTTC 3 cut(s) 476, 954, 1024
Eco130I CCWWGG 1 cut(s) 321
Eco47I GGWCC 1 cut(s) 871
Eco47III AGCGCT 1 cut(s) 596
Eco57I CTGAAG 2 cut(s) 437, 1465
EcoRII CCWGG 3 cut(s) 912, 1305, 1441
EcoT14I CCWWGG 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 373
FaeI CATG 9 cut(s) 10, 434, 493, 692, 899, 1147, 1185, 1356, 1432
FatI CATG 9 cut(s) 6, 430, 489, 688, 895, 1143, 1181, 1352, 1428
FauNDI CATATG 1 cut(s) 175
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 2 cut(s) 234, 1186
FokI GGATG 3 cut(s) 158, 253, 789
Fsp4HI GCNGC 2 cut(s) 234, 1186
FspBI CTAG 2 cut(s) 650, 1173
GlaI GCGC 1 cut(s) 596
GluI GCNGC 2 cut(s) 234, 1186
GsuI CTGGAG 1 cut(s) 180
HaeII RGCGCY 1 cut(s) 598
HaeIII GGCC 3 cut(s) 526, 665, 1094
HapII CCGG 1 cut(s) 167
HgaI GACGC 2 cut(s) 390, 1364
HhaI GCGC 1 cut(s) 597
Hin1I GRCGYC 1 cut(s) 1375
Hin1II CATG 9 cut(s) 10, 434, 493, 692, 899, 1147, 1185, 1356, 1432
Hin6I GCGC 1 cut(s) 595
HinP1I GCGC 1 cut(s) 595
HincII GTYRAC 1 cut(s) 997
HindII GTYRAC 1 cut(s) 997
HindIII AAGCTT 2 cut(s) 43, 746
HpaII CCGG 1 cut(s) 167
HphI GGTGA 2 cut(s) 902, 1208
Hpy166II GTNNAC 4 cut(s) 344, 406, 871, 997
Hpy188I TCNGA 7 cut(s) 41, 123, 336, 628, 771, 1227, 1324
Hpy8I GTNNAC 4 cut(s) 344, 406, 871, 997
Hpy99I CGWCG 1 cut(s) 1380
HpyAV CCTTC 5 cut(s) 143, 320, 412, 785, 852
HpyCH4III ACNGT 5 cut(s) 74, 505, 875, 1007, 1061
HpyCH4IV ACGT 1 cut(s) 1041
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 206, 671, 1288, 1310
HpyF3I CTNAG 6 cut(s) 46, 60, 85, 699, 1323, 1358
HpySE526I ACGT 1 cut(s) 1041
Hsp92I GRCGYC 1 cut(s) 1375
Hsp92II CATG 9 cut(s) 10, 434, 493, 692, 899, 1147, 1185, 1356, 1432
HspAI GCGC 1 cut(s) 595
Kzo9I GATC 5 cut(s) 421, 634, 1413, 1485, 1489
LmnI GCTCC 2 cut(s) 23, 323
Lsp1109I GCAGC 2 cut(s) 245, 1197
LweI GCATC 4 cut(s) 105, 127, 811, 1189
MaeI CTAG 2 cut(s) 650, 1173
MaeII ACGT 1 cut(s) 1041
MaeIII GTNAC 1 cut(s) 1252
MalI GATC 5 cut(s) 423, 636, 1415, 1487, 1491
MboI GATC 5 cut(s) 421, 634, 1413, 1485, 1489
MfeI CAATTG 2 cut(s) 549, 731
MhlI GDGCHC 3 cut(s) 320, 785, 1306
MluCI AATT 9 cut(s) 536, 549, 630, 658, 680, 731, 759, 981, 1474
MlyI GAGTC 2 cut(s) 164, 914
MmeI TCCRAC 1 cut(s) 1024
MroXI GAANNNNTTC 2 cut(s) 330, 795
MseI TTAA 5 cut(s) 249, 365, 543, 599, 840
MslI CAYNNNNRTG 3 cut(s) 429, 693, 894
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 3 cut(s) 914, 1307, 1443
MunI CAATTG 2 cut(s) 549, 731
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 3 cut(s) 914, 1307, 1443
MvnI CGCG 1 cut(s) 384
MwoI GCNNNNNNNGC 5 cut(s) 137, 206, 671, 1288, 1310
NdeI CATATG 1 cut(s) 175
NdeII GATC 5 cut(s) 421, 634, 1413, 1485, 1489
NlaIII CATG 9 cut(s) 10, 434, 493, 692, 899, 1147, 1185, 1356, 1432
NlaIV GGNNCC 3 cut(s) 171, 1245, 1447
NmuCI GTSAC 1 cut(s) 1252
NspV TTCGAA 1 cut(s) 256
PcsI WCGNNNNNNNCGW 1 cut(s) 1047
PctI GAATGC 1 cut(s) 133
PdmI GAANNNNTTC 2 cut(s) 330, 795
PfoI TCCNGGA 1 cut(s) 1441
PkrI GCNGC 2 cut(s) 235, 1187
PleI GAGTC 2 cut(s) 163, 913
PpsI GAGTC 2 cut(s) 163, 913
PshAI GACNNNNGTC 1 cut(s) 1077
PshBI ATTAAT 1 cut(s) 365
PsiI TTATAA 1 cut(s) 584
Psp6I CCWGG 3 cut(s) 912, 1305, 1441
PspGI CCWGG 3 cut(s) 912, 1305, 1441
PspN4I GGNNCC 3 cut(s) 171, 1245, 1447
PspPI GGNCC 1 cut(s) 871
PstI CTGCAG 2 cut(s) 580, 646
RsaI GTAC 2 cut(s) 165, 1058
RsaNI GTAC 2 cut(s) 164, 1057
RseI CAYNNNNRTG 3 cut(s) 429, 693, 894
SaqAI TTAA 5 cut(s) 249, 365, 543, 599, 840
SatI GCNGC 2 cut(s) 234, 1186
Sau3AI GATC 5 cut(s) 421, 634, 1413, 1485, 1489
Sau96I GGNCC 1 cut(s) 871
SchI GAGTC 2 cut(s) 164, 914
ScrFI CCNGG 3 cut(s) 914, 1307, 1443
SduI GDGCHC 3 cut(s) 320, 785, 1306
SfaNI GCATC 4 cut(s) 105, 127, 811, 1189
SfcI CTRYAG 3 cut(s) 447, 576, 642
SfuI TTCGAA 1 cut(s) 256
SinI GGWCC 1 cut(s) 871
SmiMI CAYNNNNRTG 3 cut(s) 429, 693, 894
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
Sse9I AATT 9 cut(s) 536, 549, 630, 658, 680, 731, 759, 981, 1474
SspMI CTAG 2 cut(s) 650, 1173
StyD4I CCNGG 3 cut(s) 912, 1305, 1441
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 5 cut(s) 74, 505, 875, 1007, 1061
TaiI ACGT 1 cut(s) 1044
TaqI TCGA 4 cut(s) 135, 256, 304, 1488
TasI AATT 9 cut(s) 536, 549, 630, 658, 680, 731, 759, 981, 1474
Tru1I TTAA 5 cut(s) 249, 365, 543, 599, 840
Tru9I TTAA 5 cut(s) 249, 365, 543, 599, 840
TscAI CASTG 3 cut(s) 79, 1012, 1293
TseFI GTSAC 1 cut(s) 1252
TseI GCWGC 2 cut(s) 233, 1185
Tsp45I GTSAC 1 cut(s) 1252
TspDTI ATGAA 7 cut(s) 140, 162, 684, 943, 1170, 1249, 1332
TspGWI ACGGA 2 cut(s) 253, 361
TspRI CASTG 3 cut(s) 79, 1012, 1293
VpaK11BI GGWCC 1 cut(s) 871
VspI ATTAAT 1 cut(s) 365
XapI RAATTY 1 cut(s) 1474
XbaI TCTAGA 1 cut(s) 649
XmiI GTMKAC 1 cut(s) 405
XmnI GAANNNNTTC 2 cut(s) 330, 795
XspI CTAG 2 cut(s) 650, 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.