Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003371

Physical Location & Seq

Genomic Coordinates Forward (+)

27423345 .. 27434967

Gene Structure 11623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0157300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2487 bp

ATGGCTGTGGAGATAGACAAGCTTCTCCACGATGAAGCTGCTTGCATAGCCCGTTTCTACCGGATTATTCTCAGTTGGGACTTCTTCCGCATAACCCAGGAAGCCGACAAAAGAAATAAGGACAAGGAAAAGATAGATGAGAGCTTGGGATTTGGACAAGTCAAGGACAGTTACGCAGACGTTGATGACTATATCTCTACTTACGAGCCTCTTATTTTCGAAGAAATCAAAGCTGAGATTGCTTCCAACAAGGATCAGTTGGGAACAGGCAAGACAACCTGTGTGACGGAATGCAAGGAAGAGGATGGGTTTTACATGGCTACTGTTTTTGTTGACTTGGATGGTGGCCATGATGAACAGACAAAAGTGAAGCCCAATGATCTTTTTCTGTTGTCGAAACCACTTTGGTCCAAACAAACGGTTCCAGAGGAGAATTCTTATAAGAAATACGCATTTGCATTGGTGGAAAGTCGCACAAAAGAATCTATAAAGCTTAGAATGTATTTGGCTGGAGAAGTCAGAGACTTGAATACAGATGCAATTCAATATTGTCCGAGGCTGGCACAAGTGCGGTCATTGGTTACTTCTAATGGTGAAGGAGACAGGCTTTTTGATGTTACAAAGATTTGCAGTTTATCTACTACTGCTCGTGAATATATAGCTTTGCGGTCAATTGGTTCTCTCCCTTTTAAGGATTTGATACTTGCACCTTCTGAGAAAAATCTTGATGCAGAAGACCAAGCCTGGAAAGTTTCTGGACCTCTTGAGGAATATATAAAAGACAATCTGAATGAATCTCAACAAAAAGCCATACAGGCCGGTCTATCACGAAAACCATTCATCCTGATACAGGGTCCTCCAGGAACAGGAAAGACACAGACTATCCTTGCGCTTCTTAGTGCCATTCTGCATGCCACTCCTGCAAGAGTAAAAGCCAGGGTTGCACTGCTAGACATAAAGCATCAGCAGAAGTTATCTATTCAGGAGAAATTCAATCATTGGCAACTAGCGTCTCCCTGGCTTAGTGGTAGCAACCCTAGAGAGAAAACAATGCCTGTTAATGGCGATGATGGTTTTTTTCCAACCACTGGAAATGAGTTAAAACCAGAAGTAGTCAGTTCTACCCGTAAATATCGTGTACGTGTCCTTGTCTGTGCTCCTTCAAACTCTGCACTCGATGAGATTGTATTGCGTGTTATGAACAATGGTGTGCGGGATGAAAGTGACCGTTCATATAGTCCCAAAATTGTGCGGATTGGGGTCAAGGAACATCATTCTATCCGATCTGTCTCCATAAATGAGCTGGTACAAAGAAAGAAAGGAAGCATGGGGGGTGCTAAACTAGATGGAGGTGATGAAGCACTTCGAGCTGTAATTTTGGAGGAGGCCATAATTGTCTTCTCGACCCTCAGTAGCAGTGGTTCAGCCCATTTCGGTAAATTTGATCGTGGTTTTGATGTTGTTATAATAGATGAAGCTGCACAGGCTGTTGAACCTGCGACTCTTGTTCCATTGGCGAATGGATGCAAACAAGTATTTCTGATAGGTGACCCTGTTCAACTGCCCGCTACTGTAAAGTCTCCCATTGCTGTGAAATTTGGGTATGGAAGGAGTATGTTCGAGAGATTTCAGCGGGCTGGATATCCAGTGACCATGCTGAAGATGCAGTATCGTATGCATCCAGAGATCAGAAGCTTTCCTTCTGGAGAGTTTTATGCAGACTCATTGGAAGATGGTCCTAATATCAGAGAGCAGACAAAGCGTTCATGGCATGAGTATAGCTGCTTTGGACCATTTTGCTTCTTTGACTTGCATGAAGGGAAATCAGTCAAGCCTCAGGCAAGTGGATCTTGGGTGAATGCTGATGAGGTTGAATTTGTCTTGAACTTGTATCACAAGTTGGTGAGCCGATATCCAGAGCTTAAATCTAGTAATAAGTTTGCAATTATAACTACTTACCGTGCACAAGTAGATCTCTTGAAAGAACGCTTCAAAAGTACTTTTGGAGTGGACTCTGAGAAAGAAGTGGAAATCACTACTGTTGATGGTTGCCAGGGACGTGAAAAGGAGGTTGCAATATTTTCTTGTGTCAGGGCAAGCAAGGAAGGAGGAATTGGGTTTGTGGAAGATTTTCGGCGAATGAATGTTGGGATTACTAGAGCAAAAGCATCTATCCTGGTGGTTGGATCTGCATCAACATTGAGGAGGAGTGATAGCCATTGGAATAACCTAGTGGAAAGCGCTGAAAAGAGACAATGCTTAATTAAGGTTTCGAAGCCATATACCGCGTTTTTCAGTGATGAGAGTCTGGAATCTATGAGAACCAAGGAAGAAATCATGCCAAGCGAGGAAGTTCAAAATGATGAATTAGATTACAGCATGCCTACCTACACTGTTGGGGATGCTGATGAAGTGCAGGGAGATGACAATGGCTATGGTGACGGGGACGAGATGGACATGGATGATGGAGGTTTTGGAGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

828

Amino Acids

92.7

Weight (kDa)

5.35

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_11	PF13086	262 - 440	1.5e-25	AAA domain
AAA_11	PF13086	448 - 527	6.1e-28	AAA domain
AAA_12	PF13087	535 - 731	8.1e-62	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06250 AT3G06250 AT3G06250 AT5G18960 AT5G18960
fragaria_vesca	FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102
malus_domestica	MD13G1179800.v1.1 MD16G1181100.v1.1
prunus_persica	Prupe.1G148400_v2.0.a1 Prupe.1G148400_v2.0.a1
pyrus_communis	pycom13g15530 pycom16g15190
rosa_chinensis	RchiOBHm_Chr4g0419141
rosa_laevigata	RLG00000007823
rosa_multiflora	Rmu_sc0001826.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362200
rosa_rugosa	Rorug04G0157200 Rorug04G0157300 Rorug04G0157400 Rorug04G0157500 Rorug04G0157600
rosa_samantha	Rh4AG219200 Rh4BG220500 Rh4CG231400 Rh4DG218000
rosa_wichuraiana	Rw4G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	441, 1466, 1949
Acc36I	ACCTGC	1 cut(s)	1504
AccB7I	CCANNNNNTGG	1 cut(s)	1088
AccII	CGCG	1 cut(s)	2288
AciI	CCGC	8 cut(s)	88, 571, 667, 1213, 1252, 1566, 1633, 2286
AclWI	GGATC	3 cut(s)	261, 1855, 2194
AcoI	YGGCCR	1 cut(s)	346
AcsI	RAATTY	5 cut(s)	433, 989, 1439, 1595, 1874
AcuI	CTGAAG	1 cut(s)	1679
AfaI	GTAC	3 cut(s)	1140, 1308, 1999
AfeI	AGCGCT	1 cut(s)	2242
AfiI	CCNNNNNNNGG	5 cut(s)	691, 850, 866, 1061, 1088
AflIII	ACRYGT	1 cut(s)	1141
AjiI	CACGTC	1 cut(s)	2060
AjnI	CCWGG	7 cut(s)	96, 743, 859, 935, 1016, 2052, 2175
AjuI	GAANNNNNNNTTGG	2 cut(s)	2097, 2129
Alw21I	GWGCWC	2 cut(s)	1159, 1966
Alw26I	GTCTC	6 cut(s)	516, 594, 1017, 1294, 1584, 2245
Alw44I	GTGCAC	1 cut(s)	1962
AlwI	GGATC	3 cut(s)	261, 1855, 2194
Aor51HI	AGCGCT	1 cut(s)	2242
AoxI	GGCC	3 cut(s)	346, 816, 1386
ApaLI	GTGCAC	1 cut(s)	1962
ApeKI	GCWGC	3 cut(s)	38, 1478, 1782
ApoI	RAATTY	5 cut(s)	433, 989, 1439, 1595, 1874
ArsI	GACNNNNNNTTYG	2 cut(s)	593, 625
Asp700I	GAANNNNTTC	2 cut(s)	1362, 2130
AspLEI	GCGC	2 cut(s)	892, 2243
AspS9I	GGNCC	5 cut(s)	408, 758, 854, 1736, 1790
AsuHPI	GGTGA	6 cut(s)	605, 1364, 1559, 1867, 1915, 2450
AsuII	TTCGAA	2 cut(s)	219, 2273
AvaII	GGWCC	5 cut(s)	408, 758, 854, 1736, 1790
AxyI	CCTNAGG	1 cut(s)	1836
BaeGI	GKGCMC	1 cut(s)	1966
BalI	TGGCCA	1 cut(s)	348
BauI	CACGAG	1 cut(s)	648
BbsI	GAAGAC	2 cut(s)	741, 1390
Bbv12I	GWGCWC	2 cut(s)	1159, 1966
BbvI	GCAGC	3 cut(s)	25, 1465, 1769
BccI	CCATC	8 cut(s)	299, 335, 1064, 1340, 1727, 2039, 2446, 2459
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
BcoDI	GTCTC	6 cut(s)	516, 594, 1017, 1294, 1584, 2245
BfaI	CTAG	7 cut(s)	950, 1007, 1038, 1343, 1929, 2157, 2231
BfoI	RGCGCY	1 cut(s)	2244
BfuAI	ACCTGC	1 cut(s)	1504
BglI	GCCNNNNNGGC	1 cut(s)	815
BglII	AGATCT	1 cut(s)	1972
BisI	GCNGC	3 cut(s)	39, 1479, 1783
BlsI	GCNGC	3 cut(s)	40, 1480, 1784
BmcAI	AGTACT	1 cut(s)	1999
Bme1390I	CCNGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
Bme18I	GGWCC	5 cut(s)	408, 758, 854, 1736, 1790
BmgBI	CACGTC	1 cut(s)	2060
BmgT120I	GGNCC	5 cut(s)	408, 758, 854, 1736, 1790
BmiI	GGNNCC	2 cut(s)	423, 855
BmrFI	CCNGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
BmsI	GCATC	9 cut(s)	526, 718, 970, 1514, 1653, 1687, 2177, 2201, 2392
BpiI	GAAGAC	2 cut(s)	741, 1390
BpmI	CTGGAG	3 cut(s)	531, 843, 1725
Bpu14I	TTCGAA	2 cut(s)	219, 2273
BpuEI	CTTGAG	1 cut(s)	785
BsaAI	YACGTR	1 cut(s)	1142
BsaBI	GATNNNNATC	1 cut(s)	2191
BsaJI	CCNNGG	6 cut(s)	96, 554, 936, 1016, 2053, 2325
BsaWI	WCCGGW	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	5 cut(s)	691, 850, 866, 1061, 1088
Bse118I	RCCGGY	1 cut(s)	818
Bse1I	ACTGG	2 cut(s)	1093, 1646
Bse21I	CCTNAGG	1 cut(s)	1836
Bse3DI	GCAATG	1 cut(s)	1584
Bse8I	GATNNNNATC	1 cut(s)	2191
BseBI	CCWGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
BseDI	CCNNGG	6 cut(s)	96, 554, 936, 1016, 2053, 2325
BseGI	GGATG	8 cut(s)	310, 346, 840, 1222, 1529, 1678, 2407, 2467
BseJI	GATNNNNATC	1 cut(s)	2191
BseLI	CCNNNNNNNGG	5 cut(s)	691, 850, 866, 1061, 1088
BseMI	GCAATG	1 cut(s)	1584
BseMII	CTCAG	6 cut(s)	85, 225, 705, 1423, 1850, 2007
BseNI	ACTGG	2 cut(s)	1093, 1646
BseRI	GAGGAG	4 cut(s)	443, 1397, 2218, 2221
BseSI	GKGCMC	1 cut(s)	1966
BseXI	GCAGC	3 cut(s)	25, 1465, 1769
BsgI	GTGCAG	3 cut(s)	1155, 1464, 2435
Bsh1236I	CGCG	1 cut(s)	2288
BshFI	GGCC	3 cut(s)	348, 818, 1388
BsiHKAI	GWGCWC	2 cut(s)	1159, 1966
BsiSI	CCGG	2 cut(s)	61, 819
BslFI	GGGAC	4 cut(s)	92, 1224, 2070, 2459
BslI	CCNNNNNNNGG	5 cut(s)	691, 850, 866, 1061, 1088
BsmAI	GTCTC	6 cut(s)	516, 594, 1017, 1294, 1584, 2245
BsmBI	CGTCTC	1 cut(s)	1017
BsmFI	GGGAC	4 cut(s)	92, 1224, 2070, 2459
BsmI	GAATGC	2 cut(s)	296, 1864
BsnI	GGCC	3 cut(s)	348, 818, 1388
Bsp119I	TTCGAA	2 cut(s)	219, 2273
Bsp1286I	GDGCHC	2 cut(s)	1159, 1966
Bsp143I	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
BspACI	CCGC	8 cut(s)	88, 571, 667, 1213, 1252, 1566, 1633, 2286
BspANI	GGCC	3 cut(s)	348, 818, 1388
BspCNI	CTCAG	6 cut(s)	84, 226, 706, 1422, 1849, 2008
BspFNI	CGCG	1 cut(s)	2288
BspLI	GGNNCC	2 cut(s)	423, 855
BspMI	ACCTGC	1 cut(s)	1504
BspPI	GGATC	3 cut(s)	261, 1855, 2194
BspT104I	TTCGAA	2 cut(s)	219, 2273
BsrDI	GCAATG	1 cut(s)	1584
BsrFI	RCCGGY	1 cut(s)	818
BsrI	ACTGG	2 cut(s)	1093, 1646
BssAI	RCCGGY	1 cut(s)	818
BssECI	CCNNGG	6 cut(s)	96, 554, 936, 1016, 2053, 2325
BssMI	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
BssSI	CACGAG	1 cut(s)	648
BssT1I	CCWWGG	1 cut(s)	2325
Bst2BI	CACGAG	1 cut(s)	648
Bst2UI	CCWGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
Bst4CI	ACNGT	8 cut(s)	170, 325, 421, 1229, 1573, 1961, 2041, 2395
Bst6I	CTCTTC	1 cut(s)	294
BstBAI	YACGTR	1 cut(s)	1142
BstBI	TTCGAA	2 cut(s)	219, 2273
BstC8I	GCNNGC	7 cut(s)	43, 561, 912, 1566, 1635, 2098, 2381
BstDEI	CTNAG	9 cut(s)	71, 234, 494, 714, 896, 1022, 1409, 1836, 2016
BstEII	GGTNACC	1 cut(s)	1547
BstENI	CCTNNNNNAGG	1 cut(s)	848
BstF5I	GGATG	8 cut(s)	310, 346, 840, 1222, 1529, 1678, 2407, 2467
BstFNI	CGCG	1 cut(s)	2288
BstH2I	RGCGCY	1 cut(s)	2244
BstHHI	GCGC	2 cut(s)	892, 2243
BstKTI	GATC	8 cut(s)	256, 382, 1286, 1447, 1689, 1850, 1975, 2189
BstMAI	GTCTC	6 cut(s)	516, 594, 1017, 1294, 1584, 2245
BstMBI	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
BstNI	CCWGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
BstNSI	RCATGY	2 cut(s)	914, 2383
BstPI	GGTNACC	1 cut(s)	1547
BstSCI	CCNGG	7 cut(s)	96, 743, 859, 935, 1016, 2052, 2175
BstSLI	GKGCMC	1 cut(s)	1966
BstUI	CGCG	1 cut(s)	2288
BstV1I	GCAGC	3 cut(s)	25, 1465, 1769
BstV2I	GAAGAC	2 cut(s)	741, 1390
BstX2I	RGATCY	3 cut(s)	1847, 1972, 2186
BstYI	RGATCY	3 cut(s)	1847, 1972, 2186
Bsu36I	CCTNAGG	1 cut(s)	1836
BsuRI	GGCC	3 cut(s)	348, 818, 1388
BtgZI	GCGATG	1 cut(s)	1080
BtrI	CACGTC	1 cut(s)	2060
BtsCI	GGATG	8 cut(s)	310, 346, 840, 1222, 1529, 1678, 2407, 2467
BtsI	GCAGTG	2 cut(s)	944, 1423
BtsIMutI	CAGTG	6 cut(s)	944, 1086, 1423, 1653, 2302, 2391
BveI	ACCTGC	1 cut(s)	1504
Cac8I	GCNNGC	7 cut(s)	43, 561, 912, 1566, 1635, 2098, 2381
CfoI	GCGC	2 cut(s)	892, 2243
Cfr10I	RCCGGY	1 cut(s)	818
Cfr13I	GGNCC	5 cut(s)	408, 758, 854, 1736, 1790
CseI	GACGC	1 cut(s)	999
Csp6I	GTAC	3 cut(s)	1139, 1307, 1998
CviQI	GTAC	3 cut(s)	1139, 1307, 1998
DdeI	CTNAG	9 cut(s)	71, 234, 494, 714, 896, 1022, 1409, 1836, 2016
DpnI	GATC	8 cut(s)	255, 381, 1285, 1446, 1688, 1849, 1974, 2188
DpnII	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	2325
Eco32I	GATATC	2 cut(s)	1643, 1913
Eco47I	GGWCC	5 cut(s)	408, 758, 854, 1736, 1790
Eco47III	AGCGCT	1 cut(s)	2242
Eco57I	CTGAAG	1 cut(s)	1679
Eco81I	CCTNAGG	1 cut(s)	1836
Eco91I	GGTNACC	1 cut(s)	1547
EcoNI	CCTNNNNNAGG	1 cut(s)	848
EcoO109I	RGGNCCY	1 cut(s)	854
EcoO65I	GGTNACC	1 cut(s)	1547
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	7 cut(s)	96, 743, 859, 935, 1016, 2052, 2175
EcoRV	GATATC	2 cut(s)	1643, 1913
EcoT14I	CCWWGG	1 cut(s)	2325
EcoT22I	ATGCAT	1 cut(s)	1680
ErhI	CCWWGG	1 cut(s)	2325
Esp3I	CGTCTC	1 cut(s)	1017
FalI	AAGNNNNNCTT	4 cut(s)	1684, 1716, 1834, 1866
FaqI	GGGAC	4 cut(s)	92, 1224, 2070, 2459
FauI	CCCGC	3 cut(s)	1206, 1573, 1626
Fnu4HI	GCNGC	3 cut(s)	39, 1479, 1783
FokI	GGATG	8 cut(s)	317, 353, 827, 1229, 1536, 1665, 2414, 2474
Fsp4HI	GCNGC	3 cut(s)	39, 1479, 1783
FspBI	CTAG	7 cut(s)	950, 1007, 1038, 1343, 1929, 2157, 2231
GlaI	GCGC	2 cut(s)	891, 2242
GluI	GCNGC	3 cut(s)	39, 1479, 1783
GsuI	CTGGAG	3 cut(s)	531, 843, 1725
HaeII	RGCGCY	1 cut(s)	2244
HaeIII	GGCC	3 cut(s)	348, 818, 1388
HapII	CCGG	2 cut(s)	61, 819
HgaI	GACGC	1 cut(s)	999
HhaI	GCGC	2 cut(s)	892, 2243
Hin6I	GCGC	2 cut(s)	890, 2241
HinP1I	GCGC	2 cut(s)	890, 2241
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	3 cut(s)	20, 491, 1693
HinfI	GANTC	7 cut(s)	482, 794, 1501, 1721, 2012, 2305, 2312
HpaII	CCGG	2 cut(s)	61, 819
HphI	GGTGA	6 cut(s)	605, 1364, 1559, 1867, 1915, 2450
Hpy166II	GTNNAC	4 cut(s)	334, 1139, 1964, 2011
Hpy188I	TCNGA	9 cut(s)	521, 555, 715, 789, 1283, 1542, 1691, 1748, 2017
Hpy8I	GTNNAC	4 cut(s)	334, 1139, 1964, 2011
HpyAV	CCTTC	7 cut(s)	590, 720, 1170, 1602, 1710, 1811, 2099
HpyCH4III	ACNGT	8 cut(s)	170, 325, 421, 1229, 1573, 1961, 2041, 2395
HpyCH4IV	ACGT	3 cut(s)	180, 1141, 2059
HpyF3I	CTNAG	9 cut(s)	71, 234, 494, 714, 896, 1022, 1409, 1836, 2016
HpySE526I	ACGT	3 cut(s)	180, 1141, 2059
HspAI	GCGC	2 cut(s)	890, 2241
Kzo9I	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
LmnI	GCTCC	1 cut(s)	1162
Lsp1109I	GCAGC	3 cut(s)	25, 1465, 1769
LweI	GCATC	9 cut(s)	526, 718, 970, 1514, 1653, 1687, 2177, 2201, 2392
MaeI	CTAG	7 cut(s)	950, 1007, 1038, 1343, 1929, 2157, 2231
MaeII	ACGT	3 cut(s)	180, 1141, 2059
MaeIII	GTNAC	8 cut(s)	170, 283, 580, 616, 1223, 1547, 1648, 2438
MalI	GATC	8 cut(s)	255, 381, 1285, 1446, 1688, 1849, 1974, 2188
MboI	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
MboII	GAAGA	9 cut(s)	76, 233, 311, 746, 1390, 1672, 1742, 2138, 2342
MfeI	CAATTG	1 cut(s)	672
MflI	RGATCY	3 cut(s)	1847, 1972, 2186
MhlI	GDGCHC	2 cut(s)	1159, 1966
MlsI	TGGCCA	1 cut(s)	348
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	4 cut(s)	1495, 1715, 2006, 2314
MmeI	TCCRAC	3 cut(s)	270, 1106, 2164
Mox20I	TGGCCA	1 cut(s)	348
Mph1103I	ATGCAT	1 cut(s)	1680
MroXI	GAANNNNTTC	2 cut(s)	1362, 2130
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	6 cut(s)	690, 1059, 1100, 1923, 2261, 2265
MslI	CAYNNNNRTG	1 cut(s)	1589
Msp20I	TGGCCA	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	1633
MspI	CCGG	2 cut(s)	61, 819
MspR9I	CCNGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
MunI	CAATTG	1 cut(s)	672
Mva1269I	GAATGC	2 cut(s)	296, 1864
MvaI	CCWGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
MvnI	CGCG	1 cut(s)	2288
NdeII	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
NlaIV	GGNNCC	2 cut(s)	423, 855
NmuCI	GTSAC	5 cut(s)	283, 1223, 1547, 1648, 2438
NsiI	ATGCAT	1 cut(s)	1680
NspI	RCATGY	2 cut(s)	914, 2383
NspV	TTCGAA	2 cut(s)	219, 2273
PacI	TTAATTAA	1 cut(s)	2265
PaeI	GCATGC	2 cut(s)	914, 2383
PctI	GAATGC	2 cut(s)	296, 1864
PdmI	GAANNNNTTC	2 cut(s)	1362, 2130
PfeI	GAWTC	3 cut(s)	482, 794, 2312
PflMI	CCANNNNNTGG	1 cut(s)	1088
PfoI	TCCNGGA	1 cut(s)	859
PkrI	GCNGC	3 cut(s)	40, 1480, 1784
PleI	GAGTC	4 cut(s)	1495, 1715, 2006, 2313
PpsI	GAGTC	4 cut(s)	1495, 1715, 2006, 2313
Ppu21I	YACGTR	1 cut(s)	1142
PpuMI	RGGWCCY	1 cut(s)	854
PsiI	TTATAA	3 cut(s)	441, 1466, 1949
Psp5II	RGGWCCY	1 cut(s)	854
Psp6I	CCWGG	7 cut(s)	96, 743, 859, 935, 1016, 2052, 2175
PspEI	GGTNACC	1 cut(s)	1547
PspGI	CCWGG	7 cut(s)	96, 743, 859, 935, 1016, 2052, 2175
PspN4I	GGNNCC	2 cut(s)	423, 855
PspPI	GGNCC	5 cut(s)	408, 758, 854, 1736, 1790
PspPPI	RGGWCCY	1 cut(s)	854
PsrI	GAACNNNNNNTAC	2 cut(s)	1405, 1437
PsuI	RGATCY	3 cut(s)	1847, 1972, 2186
RsaI	GTAC	3 cut(s)	1140, 1308, 1999
RsaNI	GTAC	3 cut(s)	1139, 1307, 1998
RseI	CAYNNNNRTG	1 cut(s)	1589
SaqAI	TTAA	6 cut(s)	690, 1059, 1100, 1923, 2261, 2265
SatI	GCNGC	3 cut(s)	39, 1479, 1783
Sau3AI	GATC	8 cut(s)	253, 379, 1283, 1444, 1686, 1847, 1972, 2186
Sau96I	GGNCC	5 cut(s)	408, 758, 854, 1736, 1790
ScaI	AGTACT	1 cut(s)	1999
SchI	GAGTC	4 cut(s)	1495, 1715, 2006, 2314
ScrFI	CCNGG	7 cut(s)	98, 745, 861, 937, 1018, 2054, 2177
SduI	GDGCHC	2 cut(s)	1159, 1966
SfaNI	GCATC	9 cut(s)	526, 718, 970, 1514, 1653, 1687, 2177, 2201, 2392
SfuI	TTCGAA	2 cut(s)	219, 2273
SinI	GGWCC	5 cut(s)	408, 758, 854, 1736, 1790
SmiMI	CAYNNNNRTG	1 cut(s)	1589
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
SphI	GCATGC	2 cut(s)	914, 2383
SsiI	CCGC	8 cut(s)	88, 571, 667, 1213, 1252, 1566, 1633, 2286
SspI	AATATT	2 cut(s)	548, 2079
SspMI	CTAG	7 cut(s)	950, 1007, 1038, 1343, 1929, 2157, 2231
StyD4I	CCNGG	7 cut(s)	96, 743, 859, 935, 1016, 2052, 2175
StyI	CCWWGG	1 cut(s)	2325
TaaI	ACNGT	8 cut(s)	170, 325, 421, 1229, 1573, 1961, 2041, 2395
TaiI	ACGT	3 cut(s)	183, 1144, 2062
TaqI	TCGA	7 cut(s)	219, 395, 1176, 1366, 1403, 1620, 2273
TatI	WGTACW	1 cut(s)	1997
TfiI	GAWTC	3 cut(s)	482, 794, 2312
Tru1I	TTAA	6 cut(s)	690, 1059, 1100, 1923, 2261, 2265
Tru9I	TTAA	6 cut(s)	690, 1059, 1100, 1923, 2261, 2265
TscAI	CASTG	6 cut(s)	951, 1093, 1423, 1653, 2302, 2398
TseFI	GTSAC	5 cut(s)	283, 1223, 1547, 1648, 2438
TseI	GCWGC	3 cut(s)	38, 1478, 1782
Tsp45I	GTSAC	5 cut(s)	283, 1223, 1547, 1648, 2438
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	6 cut(s)	951, 1093, 1423, 1653, 2302, 2398
Van91I	CCANNNNNTGG	1 cut(s)	1088
VneI	GTGCAC	1 cut(s)	1962
VpaK11BI	GGWCC	5 cut(s)	408, 758, 854, 1736, 1790
XagI	CCTNNNNNAGG	1 cut(s)	848
XapI	RAATTY	5 cut(s)	433, 989, 1439, 1595, 1874
XceI	RCATGY	2 cut(s)	914, 2383
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1300
XmnI	GAANNNNTTC	2 cut(s)	1362, 2130
XspI	CTAG	7 cut(s)	950, 1007, 1038, 1343, 1929, 2157, 2231
ZrmI	AGTACT	1 cut(s)	1999
Zsp2I	ATGCAT	1 cut(s)	1680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.