Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003371

Physical Location & Seq

Genomic Coordinates Forward (+)

15550122 .. 15553465

Gene Structure 3344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1181100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2613 bp

ATGACAATCAAATTAGGTCAAACCCTGAAATTAGGAGCAAACGAACGCCAGAGCAGAGAGATCCAAAACCCAAAACACTTCCCATTCATCATTTCACAAATTCGTCAGATTTCCGAAAGGGCGCCCTCTGATTTTTTTCCTCAATCTATTTTCCCGCCAAAATACGCTCACGAAATCCTCAAATGGCGTTTTGAGCTTCGAAATCATCGCTCACCACTGGTAGTGTTATTAATTTCAGAAATGGGCATGGAATCCAGCTCCACCCACTTCACAAATATCAGAAGCTTAGATACCGGTTCTAAGATTGAAGACAGTGGGAACAACTTAGTTATCGAGGCGTACCCTTTAGGAATGATGCCTCCGATGAATGCTGTCGATACAGAGGATGAGGGAGAGTCTGGAGTACTTGAACCGTATGTGGGGTTAGAGTTTGATTCAGCAGATGTTGCCCGTGATTTTTACACTCTCTATGCAGCACGGATGGGGTTCAAAGTTCGAACTGGTCAGTTGTATCGCTCGAGAACTGATGGGTCAGTCTCTTCTCGAAGATTTGTGTGCTCTAAGGAGGGGTTTCAGATTAGTTCACGGACAGGATGCCCGGCATTAATAAGGGTGCAGAGACGTGATTCTGGGAAATGGGTTGTAGACCTTTTCCTGAAGGATCACAATCATGGTCTTGGATCATCTACAGAGGAAAATCGTTCCCCGATTTTTCAGAAGAAGAGTTCAATGCCAACAAATTCGGTTGTTGAAGTGTCTCATAGGCCAAAAGTCAAATTGATTAAGGCAATTGAGGATAAACCACCTTGCCCATCTGGAGTTATAACTGCCAAGCGCTTAAAACGGGGTGGAGATGAAATGCAGTCAGAAGTTGATCTATCTGCAGGTCTGGAGTTCAATTCAGCCAATGAAGCATACCAATTTTATCATGCATATGCTGAGAATACAGGATTTAGAATCAGGATTGGTCAATTGTTTCGTTCAAAGCTTGATGGGTCAATTACATCTCGGAGATTTGTGTGTTCAAAGGAAGGGTTTCAGCATCCATCACGAGTTGGTTGTGGGGCATATATGAGGATTAAGAGACAAGATTCTGGAAGATGGGTAGTGGACCGTTTTGATAAAAATCATAACCATGAGTTTGAGTCTCACCTGGAAGTTCAAAAGAAAAATCTATTCTCTTCAAAAAAGTTCATAGAAGAGGAGATCGGAGGGCTGGAGATTGAAGATATTGTTGACATAAACAATGGTAACCTTGTCAAAAGACATAGAGAAAATCACATTGGAAGTGATTGGTACAGTGTGCTGTTTGACTTTTTCCAAACCAAACAGGCCGAAGATACAGGATTCTTTTATGCAGTAGAAGTTGATAATGGTAATTGCATGAGTATTTTCTGGGCTGATGGGAGGTCTAGGTTTTCATGCAGCCAGTTTGGTGATGCCATTATTTTCGACACCTCATATCGGAAAAGTATTTATCTGGTGCCATTTGCCGCTTTCATTGGAATCAACCACCACAAGCAACCGGTGCTTCTTGGCTGTGCCCTAGTTGCTGATGAGTCTGAGAAATCTTTTACTTGGTTGTTTCAAACATGGCTTAGGGCAATGTCAGGGTGTCGTCCTCTGTCAATAATAGCTGACCAAGATGATGTGATCCAGCAAGCCATCATGCAAGTTTTTCCAGGAACCCATCATCGTTTCTCGTTATGGCAGATCAAGGCAAAAGAAAGTGAGCATCTAAGCGTAATGAATGGTTCTTTTAAATATGAATATGAAAAATGCATTTATCAGTGTCAAACAGCCGATGAATTTGAAACCGCATGGAATGCACTCCTCAGCAGGTATGGGTTGAAAGATAACGCTTGGCTGAAAGCAATGTACGAAAAGCGCAGGAGTTGGGTTCCATTATACTTACGAGCTACATTCTTTGCTGGCATCCCCTTTAATGAAAGTATAGAATCATTCTTTGGTGCACATTTCAATGCCCAAACACCACTTAAGGAGTTTGTTTCACAATATGAAAGAGGCCTTGAGGGACGGCGTGAAGAAGAAATAAAAGAGGATTTTAACTCTTTTAACTTGAAAGCCTACTTGCAGACGAAAGAACCATTAGAAGAACAATGTAGAAGACTTTATACACTGAACACATTCAGGGTATTTCAGAAAGAACTTCTACAATCCTATAGTTATCTAGGATTTAAGATTTATGATGAAGGGGCAATCATCAGGTATTTGGTCCGCAAGTGCGGGAATGACGATGAGAAATCTATAGTCACGGTTGGTGCGGCCATTCCCGAAGTGGGCTGTAGCTGTCGAATGTTTGAATTTGAAGGTATACTATGTAGGCATGTGTTGAGAGTTTTCCAAATCTTGGACATAAAAGAAGTTCCCCCTTGCTATATCTTGCGCCGTTGGACTAGAAACGCTGAATATGGTATTCCTTGTGAATCTGAATTGGGTGGAAACCCTCAAGAGCTGAAGGCCTTGATGGTGTGGAGTTTGAGAGAAGCAGCCTGTAAATACATAGAGGCTGGGGCAACATCTCTTGAAAAGCACAAGCTCGCCTACGAAATAATGAGAGAGGGCGGACGAAGACTTTGTTGGCAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

871

Amino Acids

100.17

Weight (kDa)

7.95

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	152 - 226	2.7e-18	FAR1 DNA-binding domain
FAR1	PF03101	307 - 381	5.8e-19	FAR1 DNA-binding domain
MULE	PF10551	482 - 574	4.7e-25	MULE transposase domain
SWIM	PF04434	767 - 789	1.6e-07	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06250 AT3G06250 AT3G06250 AT5G18960 AT5G18960
fragaria_vesca	FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102 FvH4_4g14102
malus_domestica	MD13G1179800.v1.1 MD16G1181100.v1.1
prunus_persica	Prupe.1G148400_v2.0.a1 Prupe.1G148400_v2.0.a1
pyrus_communis	pycom13g15530 pycom16g15190
rosa_chinensis	RchiOBHm_Chr4g0419141
rosa_laevigata	RLG00000007823
rosa_multiflora	Rmu_sc0001826.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362200
rosa_rugosa	Rorug04G0157200 Rorug04G0157300 Rorug04G0157400 Rorug04G0157500 Rorug04G0157600
rosa_samantha	Rh4AG219200 Rh4BG220500 Rh4CG231400 Rh4DG218000
rosa_wichuraiana	Rw4G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	824
Acc36I	ACCTGC	2 cut(s)	875, 1830
AccB1I	GGYRCC	2 cut(s)	121, 1483
AccB7I	CCANNNNNTGG	1 cut(s)	2371
AccI	GTMKAC	2 cut(s)	645, 2335
AciI	CCGC	7 cut(s)	155, 1494, 1818, 2239, 2247, 2285, 2586
AclWI	GGATC	4 cut(s)	55, 669, 688, 1648
AcoI	YGGCCR	1 cut(s)	2286
AcsI	RAATTY	4 cut(s)	99, 739, 1808, 2324
AcuI	CTGAAG	2 cut(s)	677, 2498
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	4 cut(s)	341, 405, 1298, 1880
AfeI	AGCGCT	1 cut(s)	836
AfiI	CCNNNNNNNGG	4 cut(s)	419, 1464, 2300, 2371
AflII	CTTAAG	1 cut(s)	1997
AgeI	ACCGGT	2 cut(s)	293, 1525
AjiI	CACGTC	1 cut(s)	623
AjnI	CCWGG	2 cut(s)	1152, 1681
AjuI	GAANNNNNNNTTGG	5 cut(s)	1266, 1298, 1950, 1982, 2584
AluBI	AGCT	9 cut(s)	196, 258, 285, 988, 1637, 1919, 2310, 2476, 2560
AluI	AGCT	9 cut(s)	196, 258, 285, 988, 1637, 1919, 2310, 2476, 2560
Alw21I	GWGCWC	2 cut(s)	560, 1975
Alw26I	GTCTC	5 cut(s)	541, 613, 762, 1078, 1152
Alw44I	GTGCAC	1 cut(s)	1971
AlwI	GGATC	4 cut(s)	55, 669, 688, 1648
Ama87I	CYCGRG	1 cut(s)	517
Aor51HI	AGCGCT	1 cut(s)	836
AoxI	GGCC	5 cut(s)	764, 1332, 2026, 2286, 2481
ApaLI	GTGCAC	1 cut(s)	1971
ApeKI	GCWGC	3 cut(s)	473, 1425, 2510
ApoI	RAATTY	4 cut(s)	99, 739, 1808, 2324
ArsI	GACNNNNNNTTYG	2 cut(s)	2580, 2612
AseI	ATTAAT	2 cut(s)	230, 605
AsiGI	ACCGGT	2 cut(s)	293, 1525
Asp700I	GAANNNNTTC	2 cut(s)	1035, 2147
AspLEI	GCGC	4 cut(s)	124, 837, 1890, 2409
AspS9I	GGNCC	2 cut(s)	1111, 2236
AsuC2I	CCSGG	1 cut(s)	599
AsuHPI	GGTGA	3 cut(s)	204, 1142, 1448
AsuII	TTCGAA	2 cut(s)	199, 496
AvaI	CYCGRG	1 cut(s)	517
AvaII	GGWCC	2 cut(s)	1111, 2236
BaeGI	GKGCMC	2 cut(s)	1546, 1975
BanI	GGYRCC	2 cut(s)	121, 1483
BarI	GAAGNNNNNNTAC	4 cut(s)	274, 306, 2119, 2151
BauI	CACGAG	1 cut(s)	1050
BbsI	GAAGAC	3 cut(s)	315, 2134, 2599
Bbv12I	GWGCWC	2 cut(s)	560, 1975
BbvCI	CCTCAGC	1 cut(s)	1835
BbvI	GCAGC	3 cut(s)	485, 1437, 2522
BceAI	ACGGC	2 cut(s)	2054, 2394
BciT130I	CCWGG	2 cut(s)	1154, 1683
BcnI	CCSGG	1 cut(s)	599
BcoDI	GTCTC	5 cut(s)	541, 613, 762, 1078, 1152
BfaI	CTAG	4 cut(s)	1413, 1547, 2192, 2418
BfmI	CTRYAG	5 cut(s)	687, 882, 2182, 2268, 2305
BfoI	RGCGCY	2 cut(s)	125, 838
BfrI	CTTAAG	1 cut(s)	1997
BfuAI	ACCTGC	2 cut(s)	875, 1830
BisI	GCNGC	5 cut(s)	474, 1426, 1494, 2286, 2511
BlsI	GCNGC	5 cut(s)	475, 1427, 1495, 2287, 2512
BmcAI	AGTACT	1 cut(s)	405
Bme1390I	CCNGG	3 cut(s)	599, 1154, 1683
Bme18I	GGWCC	2 cut(s)	1111, 2236
BmeT110I	CYCGRG	1 cut(s)	517
BmgBI	CACGTC	1 cut(s)	623
BmgT120I	GGNCC	2 cut(s)	1111, 2236
BmiI	GGNNCC	4 cut(s)	123, 1485, 1687, 1902
BmrFI	CCNGG	3 cut(s)	599, 1154, 1683
BmsI	GCATC	6 cut(s)	345, 584, 1051, 1429, 1744, 1944
BpiI	GAAGAC	3 cut(s)	315, 2134, 2599
BpmI	CTGGAG	4 cut(s)	420, 837, 911, 1238
Bpu10I	CCTNAGC	2 cut(s)	1598, 1835
Bpu14I	TTCGAA	2 cut(s)	199, 496
BpuEI	CTTGAG	2 cut(s)	2051, 2454
BpuMI	CCSGG	1 cut(s)	599
BsaBI	GATNNNNATC	2 cut(s)	666, 1125
BsaHI	GRCGYC	1 cut(s)	122
BsaWI	WCCGGW	2 cut(s)	293, 1525
Bsc4I	CCNNNNNNNGG	4 cut(s)	419, 1464, 2300, 2371
Bse118I	RCCGGY	2 cut(s)	293, 1525
Bse1I	ACTGG	3 cut(s)	222, 505, 1429
Bse3DI	GCAATG	2 cut(s)	1611, 1881
Bse8I	GATNNNNATC	2 cut(s)	666, 1125
BseBI	CCWGG	2 cut(s)	1154, 1683
BseGI	GGATG	5 cut(s)	391, 486, 599, 1042, 1935
BseJI	GATNNNNATC	2 cut(s)	666, 1125
BseLI	CCNNNNNNNGG	4 cut(s)	419, 1464, 2300, 2371
BseMI	GCAATG	2 cut(s)	1611, 1881
BseMII	CTCAG	3 cut(s)	930, 1554, 1849
BseNI	ACTGG	3 cut(s)	222, 505, 1429
BseRI	GAGGAG	2 cut(s)	1217, 1823
BseSI	GKGCMC	2 cut(s)	1546, 1975
BseXI	GCAGC	3 cut(s)	485, 1437, 2522
BseYI	CCCAGC	1 cut(s)	2531
BsgI	GTGCAG	1 cut(s)	635
BshFI	GGCC	5 cut(s)	766, 1334, 2028, 2288, 2483
BshNI	GGYRCC	2 cut(s)	121, 1483
BshTI	ACCGGT	2 cut(s)	293, 1525
BsiHKAI	GWGCWC	2 cut(s)	560, 1975
BsiHKCI	CYCGRG	1 cut(s)	517
BsiSI	CCGG	3 cut(s)	294, 599, 1526
BslFI	GGGAC	1 cut(s)	2049
BslI	CCNNNNNNNGG	4 cut(s)	419, 1464, 2300, 2371
BsmAI	GTCTC	5 cut(s)	541, 613, 762, 1078, 1152
BsmBI	CGTCTC	1 cut(s)	613
BsmFI	GGGAC	1 cut(s)	2049
BsmI	GAATGC	2 cut(s)	373, 1831
BsnI	GGCC	5 cut(s)	766, 1334, 2028, 2288, 2483
BsoBI	CYCGRG	1 cut(s)	517
Bsp119I	TTCGAA	2 cut(s)	199, 496
Bsp1286I	GDGCHC	3 cut(s)	560, 1546, 1975
Bsp143I	GATC	7 cut(s)	60, 661, 680, 874, 1206, 1653, 1713
BspACI	CCGC	7 cut(s)	155, 1494, 1818, 2239, 2247, 2285, 2586
BspANI	GGCC	5 cut(s)	766, 1334, 2028, 2288, 2483
BspCNI	CTCAG	3 cut(s)	931, 1555, 1848
BspLI	GGNNCC	4 cut(s)	123, 1485, 1687, 1902
BspMAI	CTGCAG	1 cut(s)	886
BspMI	ACCTGC	2 cut(s)	875, 1830
BspPI	GGATC	4 cut(s)	55, 669, 688, 1648
BspT104I	TTCGAA	2 cut(s)	199, 496
BspT107I	GGYRCC	2 cut(s)	121, 1483
BspTI	CTTAAG	1 cut(s)	1997
BsrDI	GCAATG	2 cut(s)	1611, 1881
BsrFI	RCCGGY	2 cut(s)	293, 1525
BsrI	ACTGG	3 cut(s)	222, 505, 1429
BssAI	RCCGGY	2 cut(s)	293, 1525
BssMI	GATC	7 cut(s)	60, 661, 680, 874, 1206, 1653, 1713
BssNAI	GTATAC	1 cut(s)	2336
BssNI	GRCGYC	1 cut(s)	122
BssSI	CACGAG	1 cut(s)	1050
Bst1107I	GTATAC	1 cut(s)	2336
Bst2BI	CACGAG	1 cut(s)	1050
Bst2UI	CCWGG	2 cut(s)	1154, 1683
Bst4CI	ACNGT	5 cut(s)	314, 414, 1115, 1301, 2278
Bst6I	CTCTTC	4 cut(s)	544, 716, 1186, 1194
BstACI	GRCGYC	1 cut(s)	122
BstAFI	CTTAAG	1 cut(s)	1997
BstAPI	GCANNNNNTGC	3 cut(s)	446, 1528, 1826
BstBI	TTCGAA	2 cut(s)	199, 496
BstC8I	GCNNGC	3 cut(s)	1662, 1933, 2562
BstDEI	CTNAG	9 cut(s)	286, 300, 325, 561, 939, 1563, 1598, 1739, 1835
BstEII	GGTNACC	1 cut(s)	1250
BstF5I	GGATG	5 cut(s)	391, 486, 599, 1042, 1935
BstH2I	RGCGCY	2 cut(s)	125, 838
BstHHI	GCGC	4 cut(s)	124, 837, 1890, 2409
BstKTI	GATC	7 cut(s)	63, 664, 683, 877, 1209, 1656, 1716
BstMAI	GTCTC	5 cut(s)	541, 613, 762, 1078, 1152
BstMBI	GATC	7 cut(s)	60, 661, 680, 874, 1206, 1653, 1713
BstMWI	GCNNNNNNNGC	6 cut(s)	193, 446, 911, 1528, 1550, 1826
BstNI	CCWGG	2 cut(s)	1154, 1683
BstNSI	RCATGY	1 cut(s)	2351
BstPI	GGTNACC	1 cut(s)	1250
BstSCI	CCNGG	3 cut(s)	597, 1152, 1681
BstSFI	CTRYAG	5 cut(s)	687, 882, 2182, 2268, 2305
BstSLI	GKGCMC	2 cut(s)	1546, 1975
BstV1I	GCAGC	3 cut(s)	485, 1437, 2522
BstV2I	GAAGAC	3 cut(s)	315, 2134, 2599
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BstZ17I	GTATAC	1 cut(s)	2336
BsuRI	GGCC	5 cut(s)	766, 1334, 2028, 2288, 2483
BtgZI	GCGATG	1 cut(s)	191
BtrI	CACGTC	1 cut(s)	623
BtsCI	GGATG	5 cut(s)	391, 486, 599, 1042, 1935
BtsIMutI	CAGTG	5 cut(s)	215, 319, 1306, 1796, 2138
BveI	ACCTGC	2 cut(s)	875, 1830
Cac8I	GCNNGC	3 cut(s)	1662, 1933, 2562
CfoI	GCGC	4 cut(s)	124, 837, 1890, 2409
Cfr10I	RCCGGY	2 cut(s)	293, 1525
Cfr13I	GGNCC	2 cut(s)	1111, 2236
Csp6I	GTAC	4 cut(s)	340, 404, 1297, 1879
CspAI	ACCGGT	2 cut(s)	293, 1525
CviQI	GTAC	4 cut(s)	340, 404, 1297, 1879
DdeI	CTNAG	9 cut(s)	286, 300, 325, 561, 939, 1563, 1598, 1739, 1835
DinI	GGCGCC	1 cut(s)	123
DpnI	GATC	7 cut(s)	62, 663, 682, 876, 1208, 1655, 1715
DpnII	GATC	7 cut(s)	60, 661, 680, 874, 1206, 1653, 1713
DraI	TTTAAA	1 cut(s)	1762
EaeI	YGGCCR	1 cut(s)	2286
Eam1104I	CTCTTC	4 cut(s)	544, 716, 1186, 1194
EarI	CTCTTC	4 cut(s)	544, 716, 1186, 1194
EciI	GGCGGA	1 cut(s)	2601
Eco147I	AGGCCT	2 cut(s)	2028, 2483
Eco47I	GGWCC	2 cut(s)	1111, 2236
Eco47III	AGCGCT	1 cut(s)	836
Eco57I	CTGAAG	2 cut(s)	677, 2498
Eco88I	CYCGRG	1 cut(s)	517
Eco91I	GGTNACC	1 cut(s)	1250
EcoO65I	GGTNACC	1 cut(s)	1250
EcoRII	CCWGG	2 cut(s)	1152, 1681
EcoT22I	ATGCAT	2 cut(s)	934, 1784
EgeI	GGCGCC	1 cut(s)	123
EheI	GGCGCC	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	613
FaqI	GGGAC	1 cut(s)	2049
FauI	CCCGC	2 cut(s)	162, 2240
FauNDI	CATATG	1 cut(s)	934
FblI	GTMKAC	2 cut(s)	645, 2335
Fnu4HI	GCNGC	5 cut(s)	474, 1426, 1494, 2286, 2511
FokI	GGATG	5 cut(s)	398, 493, 606, 1029, 1922
Fsp4HI	GCNGC	5 cut(s)	474, 1426, 1494, 2286, 2511
FspBI	CTAG	4 cut(s)	1413, 1547, 2192, 2418
GlaI	GCGC	4 cut(s)	123, 836, 1889, 2408
GluI	GCNGC	5 cut(s)	474, 1426, 1494, 2286, 2511
GsaI	CCCAGC	1 cut(s)	2535
GsuI	CTGGAG	4 cut(s)	420, 837, 911, 1238
HaeII	RGCGCY	2 cut(s)	125, 838
HaeIII	GGCC	5 cut(s)	766, 1334, 2028, 2288, 2483
HapII	CCGG	3 cut(s)	294, 599, 1526
HhaI	GCGC	4 cut(s)	124, 837, 1890, 2409
Hin1I	GRCGYC	1 cut(s)	122
Hin6I	GCGC	4 cut(s)	122, 835, 1888, 2407
HinP1I	GCGC	4 cut(s)	122, 835, 1888, 2407
HincII	GTYRAC	1 cut(s)	1237
HindII	GTYRAC	1 cut(s)	1237
HindIII	AAGCTT	2 cut(s)	283, 986
HpaII	CCGG	3 cut(s)	294, 599, 1526
HphI	GGTGA	3 cut(s)	204, 1142, 1448
Hpy166II	GTNNAC	6 cut(s)	584, 646, 1111, 1237, 1973, 2336
Hpy8I	GTNNAC	6 cut(s)	584, 646, 1111, 1237, 1973, 2336
HpyAV	CCTTC	5 cut(s)	652, 1025, 2207, 2324, 2473
HpyCH4III	ACNGT	5 cut(s)	314, 414, 1115, 1301, 2278
HpyCH4IV	ACGT	1 cut(s)	622
HpyF10VI	GCNNNNNNNGC	6 cut(s)	193, 446, 911, 1528, 1550, 1826
HpyF3I	CTNAG	9 cut(s)	286, 300, 325, 561, 939, 1563, 1598, 1739, 1835
HpySE526I	ACGT	1 cut(s)	622
Hsp92I	GRCGYC	1 cut(s)	122
HspAI	GCGC	4 cut(s)	122, 835, 1888, 2407
KasI	GGCGCC	1 cut(s)	121
Kzo9I	GATC	7 cut(s)	60, 661, 680, 874, 1206, 1653, 1713
LmnI	GCTCC	2 cut(s)	35, 263
Lsp1109I	GCAGC	3 cut(s)	485, 1437, 2522
LweI	GCATC	6 cut(s)	345, 584, 1051, 1429, 1744, 1944
MaeI	CTAG	4 cut(s)	1413, 1547, 2192, 2418
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	2 cut(s)	1250, 2272
MalI	GATC	7 cut(s)	62, 663, 682, 876, 1208, 1655, 1715
MboI	GATC	7 cut(s)	60, 661, 680, 874, 1206, 1653, 1713
MfeI	CAATTG	2 cut(s)	789, 971
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	3 cut(s)	560, 1546, 1975
Mly113I	GGCGCC	1 cut(s)	122
MlyI	GAGTC	3 cut(s)	404, 1154, 1568
MmeI	TCCRAC	1 cut(s)	2393
Mph1103I	ATGCAT	2 cut(s)	934, 1784
MroXI	GAANNNNTTC	2 cut(s)	1035, 2147
MslI	CAYNNNNRTG	4 cut(s)	669, 933, 1134, 1980
MspCI	CTTAAG	1 cut(s)	1997
MspI	CCGG	3 cut(s)	294, 599, 1526
MspR9I	CCNGG	3 cut(s)	599, 1154, 1683
MunI	CAATTG	2 cut(s)	789, 971
Mva1269I	GAATGC	2 cut(s)	373, 1831
MvaI	CCWGG	2 cut(s)	1154, 1683
MwoI	GCNNNNNNNGC	6 cut(s)	193, 446, 911, 1528, 1550, 1826
NarI	GGCGCC	1 cut(s)	122
NciI	CCSGG	1 cut(s)	599
NdeI	CATATG	1 cut(s)	934
NdeII	GATC	7 cut(s)	60, 661, 680, 874, 1206, 1653, 1713
NlaIV	GGNNCC	4 cut(s)	123, 1485, 1687, 1902
NmuCI	GTSAC	1 cut(s)	2272
NsiI	ATGCAT	2 cut(s)	934, 1784
NspI	RCATGY	1 cut(s)	2351
NspV	TTCGAA	2 cut(s)	199, 496
PaeR7I	CTCGAG	1 cut(s)	517
PceI	AGGCCT	2 cut(s)	2028, 2483
PctI	GAATGC	2 cut(s)	373, 1831
PdmI	GAANNNNTTC	2 cut(s)	1035, 2147
PfeI	GAWTC	9 cut(s)	251, 434, 626, 957, 1091, 1347, 1506, 1958, 2447
PflMI	CCANNNNNTGG	1 cut(s)	2371
PfoI	TCCNGGA	1 cut(s)	1681
PinAI	ACCGGT	2 cut(s)	293, 1525
PkrI	GCNGC	5 cut(s)	475, 1427, 1495, 2287, 2512
PleI	GAGTC	3 cut(s)	403, 1153, 1567
PluTI	GGCGCC	1 cut(s)	125
PpsI	GAGTC	3 cut(s)	403, 1153, 1567
PshBI	ATTAAT	2 cut(s)	230, 605
PsiI	TTATAA	1 cut(s)	824
Psp6I	CCWGG	2 cut(s)	1152, 1681
PspEI	GGTNACC	1 cut(s)	1250
PspFI	CCCAGC	1 cut(s)	2531
PspGI	CCWGG	2 cut(s)	1152, 1681
PspN4I	GGNNCC	4 cut(s)	123, 1485, 1687, 1902
PspPI	GGNCC	2 cut(s)	1111, 2236
PstI	CTGCAG	1 cut(s)	886
PsuI	RGATCY	1 cut(s)	60
RsaI	GTAC	4 cut(s)	341, 405, 1298, 1880
RsaNI	GTAC	4 cut(s)	340, 404, 1297, 1879
RseI	CAYNNNNRTG	4 cut(s)	669, 933, 1134, 1980
SatI	GCNGC	5 cut(s)	474, 1426, 1494, 2286, 2511
Sau3AI	GATC	7 cut(s)	60, 661, 680, 874, 1206, 1653, 1713
Sau96I	GGNCC	2 cut(s)	1111, 2236
ScaI	AGTACT	1 cut(s)	405
SchI	GAGTC	3 cut(s)	404, 1154, 1568
ScrFI	CCNGG	3 cut(s)	599, 1154, 1683
SduI	GDGCHC	3 cut(s)	560, 1546, 1975
SfaNI	GCATC	6 cut(s)	345, 584, 1051, 1429, 1744, 1944
SfcI	CTRYAG	5 cut(s)	687, 882, 2182, 2268, 2305
SfoI	GGCGCC	1 cut(s)	123
Sfr274I	CTCGAG	1 cut(s)	517
SfuI	TTCGAA	2 cut(s)	199, 496
SinI	GGWCC	2 cut(s)	1111, 2236
SlaI	CTCGAG	1 cut(s)	517
SmiMI	CAYNNNNRTG	4 cut(s)	669, 933, 1134, 1980
SmlI	CTYRAG	4 cut(s)	517, 1997, 2030, 2469
SmoI	CTYRAG	4 cut(s)	517, 1997, 2030, 2469
SseBI	AGGCCT	2 cut(s)	2028, 2483
SsiI	CCGC	7 cut(s)	155, 1494, 1818, 2239, 2247, 2285, 2586
SspDI	GGCGCC	1 cut(s)	121
SspMI	CTAG	4 cut(s)	1413, 1547, 2192, 2418
StuI	AGGCCT	2 cut(s)	2028, 2483
StyD4I	CCNGG	3 cut(s)	597, 1152, 1681
TaaI	ACNGT	5 cut(s)	314, 414, 1115, 1301, 2278
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	8 cut(s)	199, 333, 375, 496, 518, 544, 1452, 2314
TatI	WGTACW	1 cut(s)	403
TauI	GCSGC	2 cut(s)	1496, 2288
TfiI	GAWTC	9 cut(s)	251, 434, 626, 957, 1091, 1347, 1506, 1958, 2447
TscAI	CASTG	5 cut(s)	222, 319, 1306, 1796, 2145
TseFI	GTSAC	1 cut(s)	2272
TseI	GCWGC	3 cut(s)	473, 1425, 2510
Tsp45I	GTSAC	1 cut(s)	2272
TspGWI	ACGGA	2 cut(s)	493, 601
TspRI	CASTG	5 cut(s)	222, 319, 1306, 1796, 2145
Van91I	CCANNNNNTGG	1 cut(s)	2371
Vha464I	CTTAAG	1 cut(s)	1997
VneI	GTGCAC	1 cut(s)	1971
VpaK11BI	GGWCC	2 cut(s)	1111, 2236
VspI	ATTAAT	2 cut(s)	230, 605
XapI	RAATTY	4 cut(s)	99, 739, 1808, 2324
XceI	RCATGY	1 cut(s)	2351
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2296
XhoI	CTCGAG	1 cut(s)	517
XmiI	GTMKAC	2 cut(s)	645, 2335
XmnI	GAANNNNTTC	2 cut(s)	1035, 2147
XspI	CTAG	4 cut(s)	1413, 1547, 2192, 2418
ZrmI	AGTACT	1 cut(s)	405
Zsp2I	ATGCAT	2 cut(s)	934, 1784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.