Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0005804

Physical Location & Seq

Genomic Coordinates Reverse (-)

15246610 .. 15248700

Gene Structure 2091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1182300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

ATGCTCCAATCTCAGAGACCGAAATCGTTCCCTGGACTTCCAGTCCTTCGCGTTTCATGTCTCAAATGGCTCTCTACCGCCGCCGCCGCATCCCAAAACCCAGAGGACAATCTCCGTACCTTCTTCACCGGCAGAATCAACCAAACCCAAACCGACTACGAGCTCGCATTGGTTTCAGCTTTAAAGTCCTGCTCTTCCCTCGCGGCCTCCTTCCAAGGCCAGCAAATCCACTCCCTTGTTCTGAAGTCCGGACTGGACTCCAACAATTTCATCAAGAACAGCTTGATTAACACGTACGCCAAATGCGGCTTCATTGCCGATGCCGAGTCGCTGTTCGATTCTTGCTCTAAGTTGGATCCGGTGTCTTGCAATATTATGGTTGCTGGCTATGTGAAATCTGGTCGTTTGGAGAGTGCACGCCAGGTGTTTGAAAAAATGCCTGAGAAGGGATGTGTCTCATATACTACTATGATAATGGGTCTTGCCCAGAATCAGTGTTGGACCGAAGCCATTGAGGTTTTCAGGGATATGAGGTCAGCGGGGGTGATCCCGAATGAGGTGACAATGGCGACTGTGATCTCAACTTACTCGCATTTGGGCAGTATTTGGAATAGTCGAATGCTTCATGCTCTGGTGATTAAGTTGCAGCTTGAGGGGTTTGTTCTTGTCTCCACGAATTTGCTGCACATGTATTGGGGTTGTTCGAGTGTATGCGATGCAAGAAGTTTGTTTAGTGAGATGCCTGAGAGGAATATAGTTTCGTGGAATGTCATGTTGAATGGGTATGCAAAAGCTGGACTTATCGATTTGGCTAGAGAGTTGTTTGACAATATTCATGCAAAGGATGTGGTCTCATGGGGTACAATGATTGACGGGTATGTGCAAGTGGAGTGGTTGAGTGAAGCTTTGATGATGTATCAGGCAATGCTGCGTACTGGGCTAGGGCCGAATGATGTTATGCTTGTAGATTTGATTTCGGCTTGTGGGCGCTCTGAGGCGGTACATGAAGGTCAGCAACTTCATGGGACAATTGTAAAGGAAGGTTTTGACTGCTATGACTTTATACAGGCAACGATCATCAATTTTTATGCAGGCTGTGGCGACATGAACCTTGCTCGTCGTCAGTTTCAAAAGGGCATCAAGGAGCATGTTGCATCTTCGAATGCCCTGATTGCAGGATACATAAGAAATGGAATGATCAACCAGGCAATTTCATTGTTTAATGAGATGCCTGAAAAAGATGTTTTTTCATGGAGTTCCATGATTTCTGGTTATGCACAGAGTGATCAACCTGAATTAGCTCTAGAACTCCTTCAAAGAATGGTAGCTACTGGGATCCAACCGAATGAAATTACGATGGTGAGTGTGTTATCTGGAATTGCTACATTAGGCACATTGAAAGAGGCAAGATGGGCACATGAATACATAATTGAAAACTCCATTCCTCTCAATGACAATCTAAGTGCAGCACTCATTGATATGTATGCCAAATGTGGGAGTATCAATACCGCCTTAGAGGTGTTCTATCAAATCCGAGATAAAACCTCAACAATCTCACCATGGAATGCCATCGTATGTGGGTTGGCCATGCACGGACATGCAAAGTTATCCCTTGAAATGTTTTCAGACTTGCAAAAGCGTAATATCAAACTCAATTCAATCACATTCATCGGCGTCCTAAGTGCATGTTGCCATGCTGGCTTCGTGGAGACTGGGGAGAGGTACTTTAAGAGCATGAAGAATGTTTACAACGTAGAACCAAATATCAAGCATTATGGTTGTATGGTGGATCTCCTTGGAAGAGCTGGCCGAGTAGGAGATGCTGAGAAAATGATAAGGAGCATGCCCATGAAGGCTGATGTAGTCATATGGGGCACACTTTTGGCGGCATGTAGAACACATGGAAATCTGGAAATAGGAGAAATGGCTGCAGAGAGTTTGACAAGGTTGCAACCATCTCATGGCCCAGTTAGAGTTCTCCTATCCAATTTATATGCAGATGCAGGGAAGTGGGAAAAAGCCTTTTCAGAGCGGCGAGCAATGCAGAGCCTAAAACTGGAGAGATCTCCAGGGCACAGTGATGTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

697

Amino Acids

76.99

Weight (kDa)

6.37

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	119 - 151	1.9e-06	PPR repeat family
PPR	PF01535	121 - 151	1.3e-07	PPR repeat
PPR	PF01535	152 - 182	5.3e-07	PPR repeat
PPR_2	PF13041	152 - 196	2.7e-09	PPR repeat family
PPR	PF01535	253 - 279	5.2e-06	PPR repeat
PPR_2	PF13041	384 - 414	4e-06	PPR repeat family
PPR	PF01535	388 - 414	5.8e-06	PPR repeat
PPR_2	PF13041	413 - 461	2.4e-09	PPR repeat family
PPR	PF01535	416 - 445	2.1e-06	PPR repeat
PPR_2	PF13041	521 - 565	1e-06	PPR repeat family
E_motif	PF20431	634 - 694	7.2e-08	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19020
fragaria_vesca	FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290
malus_domestica	MD13G1182300.v1.1 MD16G1182700.v1.1
prunus_persica	Prupe.1G150200_v2.0.a1
pyrus_communis	pycom13g15730
rosa_chinensis	RchiOBHm_Chr4g0418731 RchiOBHm_Chr4g0418821
rosa_laevigata	RLG00000007842
rosa_multiflora	Rmu_sc0000935.1_g000016 Rmu_sc0000935.1_g000030 Rmu_sc0006705.1_g000009 Rmu_sc0020345.1_g000005
rosa_roxburghii	Rroxscaffold_5G00361940 Rroxscaffold_5G00362000
rosa_rugosa	Rorug04G0154800 Rorug04G0154800
rosa_samantha	Rh4BG214200 Rh4CG228300 Rh4CG228600 Rh4DG215500
rosa_wichuraiana	Rw4G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1961
AccBSI	CCGCTC	1 cut(s)	2032
AccII	CGCG	2 cut(s)	51, 203
AccIII	TCCGGA	1 cut(s)	248
AclWI	GGATC	6 cut(s)	350, 363, 541, 1330, 1343, 1797
AcoI	YGGCCR	2 cut(s)	1584, 1807
AcsI	RAATTY	1 cut(s)	676
AcuI	CTGAAG	1 cut(s)	263
AcyI	GRCGYC	1 cut(s)	1674
AdeI	CACNNNGTG	1 cut(s)	1283
AfaI	GTAC	6 cut(s)	118, 296, 862, 934, 1002, 1724
AfiI	CCNNNNNNNGG	5 cut(s)	446, 556, 1494, 1961, 2056
AflIII	ACRYGT	2 cut(s)	291, 687
AgsI	TTSAA	8 cut(s)	431, 778, 1130, 1316, 1399, 1433, 1616, 1659
AhdI	GACNNNNNGTC	1 cut(s)	41
AjnI	CCWGG	4 cut(s)	31, 420, 1203, 2068
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	9 cut(s)	163, 179, 282, 649, 794, 905, 1301, 1328, 1805
AluI	AGCT	9 cut(s)	163, 179, 282, 649, 794, 905, 1301, 1328, 1805
Alw21I	GWGCWC	2 cut(s)	165, 418
Alw26I	GTCTC	6 cut(s)	10, 65, 460, 673, 856, 1703
Alw44I	GTGCAC	1 cut(s)	414
AlwI	GGATC	6 cut(s)	350, 363, 541, 1330, 1343, 1797
Aor13HI	TCCGGA	1 cut(s)	248
AoxI	GGCC	6 cut(s)	204, 217, 944, 1584, 1807, 1963
ApaLI	GTGCAC	1 cut(s)	414
ApeKI	GCWGC	5 cut(s)	646, 682, 928, 1466, 1928
ApoI	RAATTY	1 cut(s)	676
Asp700I	GAANNNNTTC	2 cut(s)	26, 1311
AspLEI	GCGC	1 cut(s)	990
AspS9I	GGNCC	3 cut(s)	501, 944, 1964
AsuHPI	GGTGA	6 cut(s)	118, 556, 571, 646, 1372, 1548
AsuII	TTCGAA	1 cut(s)	1160
AvaII	GGWCC	1 cut(s)	501
BaeGI	GKGCMC	4 cut(s)	418, 1417, 1877, 2076
BalI	TGGCCA	1 cut(s)	1586
BamHI	GGATCC	2 cut(s)	355, 1335
BanII	GRGCYC	1 cut(s)	165
BarI	GAAGNNNNNNTAC	2 cut(s)	1730, 1762
Bbv12I	GWGCWC	2 cut(s)	165, 418
BbvI	GCAGC	5 cut(s)	658, 669, 915, 1478, 1915
BccI	CCATC	4 cut(s)	1351, 1404, 1577, 1963
BcgI	CGANNNNNNTGC	2 cut(s)	664, 698
BciT130I	CCWGG	4 cut(s)	33, 422, 1205, 2070
BciVI	GTATCC	1 cut(s)	1172
BclI	TGATCA	2 cut(s)	1197, 1285
BcoDI	GTCTC	6 cut(s)	10, 65, 460, 673, 856, 1703
BfaI	CTAG	3 cut(s)	813, 941, 1304
BfmI	CTRYAG	1 cut(s)	1929
BfoI	RGCGCY	1 cut(s)	991
BfuI	GTATCC	1 cut(s)	1172
BglI	GCCNNNNNGGC	1 cut(s)	1698
BglII	AGATCT	1 cut(s)	2063
Bme1390I	CCNGG	4 cut(s)	33, 422, 1205, 2070
Bme18I	GGWCC	1 cut(s)	501
BmeRI	GACNNNNNGTC	1 cut(s)	41
BmgT120I	GGNCC	3 cut(s)	501, 944, 1964
BmiI	GGNNCC	2 cut(s)	357, 1337
BmrFI	CCNGG	4 cut(s)	33, 422, 1205, 2070
BmrI	ACTGGG	4 cut(s)	945, 1341, 1722, 1961
BmsI	GCATC	9 cut(s)	98, 310, 706, 729, 1146, 1163, 1218, 1810, 1990
BmuI	ACTGGG	4 cut(s)	945, 1341, 1722, 1961
BpmI	CTGGAG	2 cut(s)	2052, 2078
Bpu14I	TTCGAA	1 cut(s)	1160
BpuEI	CTTGAG	1 cut(s)	671
Bsa29I	ATCGAT	1 cut(s)	804
BsaAI	YACGTR	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	1674
BsaI	GGTCTC	2 cut(s)	10, 856
BsaJI	CCNNGG	5 cut(s)	31, 214, 1559, 1795, 2069
BsaWI	WCCGGW	2 cut(s)	248, 358
Bsc4I	CCNNNNNNNGG	5 cut(s)	446, 556, 1494, 1961, 2056
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	7 cut(s)	41, 258, 940, 1336, 1717, 1967, 2061
Bse3DI	GCAATG	3 cut(s)	312, 930, 2046
BseAI	TCCGGA	1 cut(s)	248
BseBI	CCWGG	4 cut(s)	33, 422, 1205, 2070
BseCI	ATCGAT	1 cut(s)	804
BseDI	CCNNGG	5 cut(s)	31, 214, 1559, 1795, 2069
BseGI	GGATG	3 cut(s)	89, 455, 850
BseLI	CCNNNNNNNGG	5 cut(s)	446, 556, 1494, 1961, 2056
BseMI	GCAATG	3 cut(s)	312, 930, 2046
BseMII	CTCAG	5 cut(s)	26, 432, 735, 984, 1815
BseNI	ACTGG	7 cut(s)	41, 258, 940, 1336, 1717, 1967, 2061
BseSI	GKGCMC	4 cut(s)	418, 1417, 1877, 2076
BseXI	GCAGC	5 cut(s)	658, 669, 915, 1478, 1915
BsgI	GTGCAG	2 cut(s)	668, 1485
Bsh1236I	CGCG	2 cut(s)	51, 203
BshFI	GGCC	6 cut(s)	206, 219, 946, 1586, 1809, 1965
BshVI	ATCGAT	1 cut(s)	804
BsiHKAI	GWGCWC	2 cut(s)	165, 418
BsiSI	CCGG	3 cut(s)	129, 249, 359
BsiWI	CGTACG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	1039
BslI	CCNNNNNNNGG	5 cut(s)	446, 556, 1494, 1961, 2056
BsmAI	GTCTC	6 cut(s)	10, 65, 460, 673, 856, 1703
BsmFI	GGGAC	1 cut(s)	1039
BsmI	GAATGC	3 cut(s)	624, 1168, 1570
BsnI	GGCC	6 cut(s)	206, 219, 946, 1586, 1809, 1965
Bso31I	GGTCTC	2 cut(s)	10, 856
Bsp119I	TTCGAA	1 cut(s)	1160
Bsp1286I	GDGCHC	5 cut(s)	165, 418, 1417, 1877, 2076
Bsp13I	TCCGGA	1 cut(s)	248
Bsp143I	GATC	9 cut(s)	355, 546, 576, 1074, 1197, 1285, 1335, 1789, 2063
Bsp19I	CCATGG	1 cut(s)	1559
BspANI	GGCC	6 cut(s)	206, 219, 946, 1586, 1809, 1965
BspCNI	CTCAG	5 cut(s)	25, 433, 736, 985, 1816
BspDI	ATCGAT	1 cut(s)	804
BspEI	TCCGGA	1 cut(s)	248
BspFNI	CGCG	2 cut(s)	51, 203
BspLI	GGNNCC	2 cut(s)	357, 1337
BspMAI	CTGCAG	1 cut(s)	1933
BspPI	GGATC	6 cut(s)	350, 363, 541, 1330, 1343, 1797
BspQI	GCTCTTC	2 cut(s)	199, 1795
BspT104I	TTCGAA	1 cut(s)	1160
BspTNI	GGTCTC	2 cut(s)	10, 856
BsrBI	CCGCTC	1 cut(s)	2032
BsrDI	GCAATG	3 cut(s)	312, 930, 2046
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	7 cut(s)	41, 258, 940, 1336, 1717, 1967, 2061
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	5 cut(s)	31, 214, 1559, 1795, 2069
BssMI	GATC	9 cut(s)	355, 546, 576, 1074, 1197, 1285, 1335, 1789, 2063
BssNI	GRCGYC	1 cut(s)	1674
BssT1I	CCWWGG	3 cut(s)	214, 1559, 1795
Bst2UI	CCWGG	4 cut(s)	33, 422, 1205, 2070
Bst4CI	ACNGT	2 cut(s)	574, 2078
Bst6I	CTCTTC	2 cut(s)	199, 1795
BstACI	GRCGYC	1 cut(s)	1674
BstBAI	YACGTR	1 cut(s)	294
BstBI	TTCGAA	1 cut(s)	1160
BstC8I	GCNNGC	9 cut(s)	165, 221, 385, 418, 1093, 1699, 1807, 1844, 2037
BstDEI	CTNAG	9 cut(s)	12, 348, 441, 744, 993, 1460, 1513, 1679, 1824
BstDSI	CCRYGG	1 cut(s)	1559
BstF5I	GGATG	3 cut(s)	89, 455, 850
BstFNI	CGCG	2 cut(s)	51, 203
BstH2I	RGCGCY	1 cut(s)	991
BstHHI	GCGC	1 cut(s)	990
BstKTI	GATC	9 cut(s)	358, 549, 579, 1077, 1200, 1288, 1338, 1792, 2066
BstMAI	GTCTC	6 cut(s)	10, 65, 460, 673, 856, 1703
BstMBI	GATC	9 cut(s)	355, 546, 576, 1074, 1197, 1285, 1335, 1789, 2063
BstMWI	GCNNNNNNNGC	6 cut(s)	86, 937, 1172, 1412, 1698, 2041
BstNI	CCWGG	4 cut(s)	33, 422, 1205, 2070
BstNSI	RCATGY	6 cut(s)	691, 1151, 1601, 1689, 1846, 1893
BstSCI	CCNGG	4 cut(s)	31, 420, 1203, 2068
BstSFI	CTRYAG	1 cut(s)	1929
BstSLI	GKGCMC	4 cut(s)	418, 1417, 1877, 2076
BstUI	CGCG	2 cut(s)	51, 203
BstV1I	GCAGC	5 cut(s)	658, 669, 915, 1478, 1915
BstX2I	RGATCY	4 cut(s)	355, 1335, 1789, 2063
BstYI	RGATCY	4 cut(s)	355, 1335, 1789, 2063
Bsu15I	ATCGAT	1 cut(s)	804
BsuI	GTATCC	1 cut(s)	1172
BsuRI	GGCC	6 cut(s)	206, 219, 946, 1586, 1809, 1965
BsuTUI	ATCGAT	1 cut(s)	804
BtgI	CCRYGG	1 cut(s)	1559
BtgZI	GCGATG	1 cut(s)	729
BtsCI	GGATG	3 cut(s)	89, 455, 850
BtsIMutI	CAGTG	2 cut(s)	500, 2083
Cac8I	GCNNGC	9 cut(s)	165, 221, 385, 418, 1093, 1699, 1807, 1844, 2037
CfoI	GCGC	1 cut(s)	990
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	3 cut(s)	501, 944, 1964
ClaI	ATCGAT	1 cut(s)	804
CseI	GACGC	1 cut(s)	1663
Csp6I	GTAC	6 cut(s)	117, 295, 861, 933, 1001, 1723
CspCI	CAANNNNNGTGG	4 cut(s)	828, 863, 872, 907
CviQI	GTAC	6 cut(s)	117, 295, 861, 933, 1001, 1723
DdeI	CTNAG	9 cut(s)	12, 348, 441, 744, 993, 1460, 1513, 1679, 1824
DpnI	GATC	9 cut(s)	357, 548, 578, 1076, 1199, 1287, 1337, 1791, 2065
DpnII	GATC	9 cut(s)	355, 546, 576, 1074, 1197, 1285, 1335, 1789, 2063
DraI	TTTAAA	1 cut(s)	183
DraIII	CACNNNGTG	1 cut(s)	1283
DriI	GACNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	2 cut(s)	1584, 1807
Eam1104I	CTCTTC	2 cut(s)	199, 1795
Eam1105I	GACNNNNNGTC	1 cut(s)	41
EarI	CTCTTC	2 cut(s)	199, 1795
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	3 cut(s)	214, 1559, 1795
Eco24I	GRGCYC	1 cut(s)	165
Eco31I	GGTCTC	2 cut(s)	10, 856
Eco47I	GGWCC	1 cut(s)	501
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	163
EcoRII	CCWGG	4 cut(s)	31, 420, 1203, 2068
EcoT14I	CCWWGG	3 cut(s)	214, 1559, 1795
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	3 cut(s)	214, 1559, 1795
FalI	AAGNNNNNCTT	4 cut(s)	266, 298, 783, 815
FaqI	GGGAC	1 cut(s)	1039
FauI	CCCGC	1 cut(s)	532
FauNDI	CATATG	1 cut(s)	1868
FbaI	TGATCA	2 cut(s)	1197, 1285
FokI	GGATG	3 cut(s)	76, 462, 857
FriOI	GRGCYC	1 cut(s)	165
FspBI	CTAG	3 cut(s)	813, 941, 1304
GlaI	GCGC	1 cut(s)	989
GsuI	CTGGAG	2 cut(s)	2052, 2078
HaeII	RGCGCY	1 cut(s)	991
HaeIII	GGCC	6 cut(s)	206, 219, 946, 1586, 1809, 1965
HapII	CCGG	3 cut(s)	129, 249, 359
HgaI	GACGC	1 cut(s)	1663
HhaI	GCGC	1 cut(s)	990
Hin1I	GRCGYC	1 cut(s)	1674
Hin6I	GCGC	1 cut(s)	988
HinP1I	GCGC	1 cut(s)	988
HindIII	AAGCTT	1 cut(s)	903
HinfI	GANTC	5 cut(s)	135, 257, 326, 338, 490
HpaII	CCGG	3 cut(s)	129, 249, 359
HphI	GGTGA	6 cut(s)	118, 556, 571, 646, 1372, 1548
Hpy166II	GTNNAC	2 cut(s)	416, 1747
Hpy188I	TCNGA	6 cut(s)	15, 243, 994, 1535, 1627, 2029
Hpy188III	TCNNGA	6 cut(s)	249, 274, 550, 1304, 1374, 1910
Hpy8I	GTNNAC	2 cut(s)	416, 1747
Hpy99I	CGWCG	1 cut(s)	1122
HpyAV	CCTTC	8 cut(s)	56, 130, 220, 439, 1001, 1034, 1322, 1846
HpyCH4III	ACNGT	2 cut(s)	574, 2078
HpyCH4IV	ACGT	2 cut(s)	293, 1752
HpyF10VI	GCNNNNNNNGC	6 cut(s)	86, 937, 1172, 1412, 1698, 2041
HpyF3I	CTNAG	9 cut(s)	12, 348, 441, 744, 993, 1460, 1513, 1679, 1824
HpySE526I	ACGT	2 cut(s)	293, 1752
Hsp92I	GRCGYC	1 cut(s)	1674
HspAI	GCGC	1 cut(s)	988
Kpn2I	TCCGGA	1 cut(s)	248
Ksp22I	TGATCA	2 cut(s)	1197, 1285
Kzo9I	GATC	9 cut(s)	355, 546, 576, 1074, 1197, 1285, 1335, 1789, 2063
LguI	GCTCTTC	2 cut(s)	199, 1795
LmnI	GCTCC	3 cut(s)	9, 1144, 1839
Lsp1109I	GCAGC	5 cut(s)	658, 669, 915, 1478, 1915
LweI	GCATC	9 cut(s)	98, 310, 706, 729, 1146, 1163, 1218, 1810, 1990
MaeI	CTAG	3 cut(s)	813, 941, 1304
MaeII	ACGT	2 cut(s)	293, 1752
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	9 cut(s)	357, 548, 578, 1076, 1199, 1287, 1337, 1791, 2065
MbiI	CCGCTC	1 cut(s)	2032
MboI	GATC	9 cut(s)	355, 546, 576, 1074, 1197, 1285, 1335, 1789, 2063
MboII	GAAGA	5 cut(s)	115, 186, 1149, 1750, 1812
MfeI	CAATTG	1 cut(s)	1029
MflI	RGATCY	4 cut(s)	355, 1335, 1789, 2063
MhlI	GDGCHC	5 cut(s)	165, 418, 1417, 1877, 2076
MlsI	TGGCCA	1 cut(s)	1586
MluNI	TGGCCA	1 cut(s)	1586
MlyI	GAGTC	2 cut(s)	251, 335
MmeI	TCCRAC	4 cut(s)	285, 333, 479, 1363
Mox20I	TGGCCA	1 cut(s)	1586
MroI	TCCGGA	1 cut(s)	248
MroXI	GAANNNNTTC	2 cut(s)	26, 1311
MscI	TGGCCA	1 cut(s)	1586
MseI	TTAA	5 cut(s)	182, 288, 639, 1221, 1728
MslI	CAYNNNNRTG	4 cut(s)	1478, 1596, 1847, 2079
Msp20I	TGGCCA	1 cut(s)	1586
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	3 cut(s)	129, 249, 359
MspR9I	CCNGG	4 cut(s)	33, 422, 1205, 2070
MunI	CAATTG	1 cut(s)	1029
Mva1269I	GAATGC	3 cut(s)	624, 1168, 1570
MvaI	CCWGG	4 cut(s)	33, 422, 1205, 2070
MvnI	CGCG	2 cut(s)	51, 203
MwoI	GCNNNNNNNGC	6 cut(s)	86, 937, 1172, 1412, 1698, 2041
NcoI	CCATGG	1 cut(s)	1559
NdeI	CATATG	1 cut(s)	1868
NdeII	GATC	9 cut(s)	355, 546, 576, 1074, 1197, 1285, 1335, 1789, 2063
NlaIV	GGNNCC	2 cut(s)	357, 1337
NmeAIII	GCCGAG	2 cut(s)	349, 1835
NmuCI	GTSAC	1 cut(s)	559
NspI	RCATGY	6 cut(s)	691, 1151, 1601, 1689, 1846, 1893
NspV	TTCGAA	1 cut(s)	1160
PaeI	GCATGC	1 cut(s)	1846
PciI	ACATGT	1 cut(s)	687
PciSI	GCTCTTC	2 cut(s)	199, 1795
PctI	GAATGC	3 cut(s)	624, 1168, 1570
PdmI	GAANNNNTTC	2 cut(s)	26, 1311
PfeI	GAWTC	3 cut(s)	135, 338, 490
Pfl23II	CGTACG	1 cut(s)	294
PflMI	CCANNNNNTGG	1 cut(s)	1961
PleI	GAGTC	2 cut(s)	251, 334
PpsI	GAGTC	2 cut(s)	251, 334
Ppu21I	YACGTR	1 cut(s)	294
PscI	ACATGT	1 cut(s)	687
Psp124BI	GAGCTC	1 cut(s)	165
Psp6I	CCWGG	4 cut(s)	31, 420, 1203, 2068
PspGI	CCWGG	4 cut(s)	31, 420, 1203, 2068
PspLI	CGTACG	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	357, 1337
PspPI	GGNCC	3 cut(s)	501, 944, 1964
PstI	CTGCAG	1 cut(s)	1933
PsuI	RGATCY	4 cut(s)	355, 1335, 1789, 2063
RsaI	GTAC	6 cut(s)	118, 296, 862, 934, 1002, 1724
RsaNI	GTAC	6 cut(s)	117, 295, 861, 933, 1001, 1723
RseI	CAYNNNNRTG	4 cut(s)	1478, 1596, 1847, 2079
SacI	GAGCTC	1 cut(s)	165
SapI	GCTCTTC	2 cut(s)	199, 1795
SaqAI	TTAA	5 cut(s)	182, 288, 639, 1221, 1728
Sau3AI	GATC	9 cut(s)	355, 546, 576, 1074, 1197, 1285, 1335, 1789, 2063
Sau96I	GGNCC	3 cut(s)	501, 944, 1964
SchI	GAGTC	2 cut(s)	251, 335
ScrFI	CCNGG	4 cut(s)	33, 422, 1205, 2070
SduI	GDGCHC	5 cut(s)	165, 418, 1417, 1877, 2076
SfaNI	GCATC	9 cut(s)	98, 310, 706, 729, 1146, 1163, 1218, 1810, 1990
SfcI	CTRYAG	1 cut(s)	1929
SfuI	TTCGAA	1 cut(s)	1160
SinI	GGWCC	1 cut(s)	501
SmiMI	CAYNNNNRTG	4 cut(s)	1478, 1596, 1847, 2079
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
SphI	GCATGC	1 cut(s)	1846
SspI	AATATT	2 cut(s)	373, 832
SspMI	CTAG	3 cut(s)	813, 941, 1304
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	4 cut(s)	31, 420, 1203, 2068
StyI	CCWWGG	3 cut(s)	214, 1559, 1795
TaaI	ACNGT	2 cut(s)	574, 2078
TaiI	ACGT	2 cut(s)	296, 1755
TaqI	TCGA	5 cut(s)	336, 616, 704, 804, 1160
TaqII	GACCGA	2 cut(s)	34, 518
TauI	GCSGC	7 cut(s)	83, 86, 89, 206, 309, 1889, 2035
TfiI	GAWTC	3 cut(s)	135, 338, 490
Tru1I	TTAA	5 cut(s)	182, 288, 639, 1221, 1728
Tru9I	TTAA	5 cut(s)	182, 288, 639, 1221, 1728
TscAI	CASTG	2 cut(s)	500, 2083
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	5 cut(s)	646, 682, 928, 1466, 1928
Tsp45I	GTSAC	1 cut(s)	559
TspGWI	ACGGA	2 cut(s)	104, 1608
TspRI	CASTG	2 cut(s)	500, 2083
Van91I	CCANNNNNTGG	1 cut(s)	1961
VneI	GTGCAC	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	501
XapI	RAATTY	1 cut(s)	676
XbaI	TCTAGA	1 cut(s)	1303
XceI	RCATGY	6 cut(s)	691, 1151, 1601, 1689, 1846, 1893
XmnI	GAANNNNTTC	2 cut(s)	26, 1311
XspI	CTAG	3 cut(s)	813, 941, 1304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.