Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020345.1

Orthogroup ID

OG0005804

Physical Location & Seq

Genomic Coordinates Forward (+)

22539 .. 23998

Gene Structure 1460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020345.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atgcttcatggtttggtggttaagttgcagcttgatggaatggtgcttgtttcgacgaatttggtgaaggtgtattgtgcttgtaagagtgtgcgggaagcgagaagtttgtttgatgagatgcctgaaaggaatatagtttcgtggaatgtcatgttaaatgggtactctaaggctggacttgtgcatttggccagagagttgtttgagaggatggatatgaaagacgtagtttcgtggggtacaatgattgatgggtatgtgcaagtggagtgcttgaatgaagctttgatgatgtattgtgcaatgctgcgtgccgggagggtcttcactgttatgatttcatacaagatcataaatttttatgcaggttgtggggaaatgattgctgctcatcttcagtttgaaaagggcatcaaggagcatgtagcatcttggaatgctctctcgcagggcacattgaaaggactatgggcttatgcatacatatgtgaaaattctattcctctgaatgacaatttgagttcagccatcattgatatgtatgccaaatgtgggagtatcaatactgccttaaagctgttctatcaaatccaagacaaaacctcttctgtctcgccatggaatgccattatatgtggattggcgctccacggacatgcagcaatgtctcttgaaatattttcggacttgcaaaggcgtgacatcaaactcaattcaataacattcatcggagtcctaagtgcttgttgccattctggtttggtggaggctggggagaggtattttaagagcatgaagaatgtttaccacattcaaccaaacattaagcattatggttgtatggtggatctcctgggtagagctggccgggtagaagatgctgagaaaattataagaagcatgcccatgaaggctgatgttgtgatatggggcacgttattggctgcatgtacaacacatgggaatctagaaataggagaaatggctgaaaagaacttgaaactgttggatccatctcatggggcaagtacaattctcatgtccaacctacttgcagatgcagggaagtgggaggaggcctctttggaaaggcgagtaatgcagagcctaagactaacgagtaacgagatcaccagggcacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

382

Amino Acids

42.58

Weight (kDa)

7.13

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19020
fragaria_vesca	FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290
malus_domestica	MD13G1182300.v1.1 MD16G1182700.v1.1
prunus_persica	Prupe.1G150200_v2.0.a1
pyrus_communis	pycom13g15730
rosa_chinensis	RchiOBHm_Chr4g0418731 RchiOBHm_Chr4g0418821
rosa_laevigata	RLG00000007842
rosa_multiflora	Rmu_sc0000935.1_g000016 Rmu_sc0000935.1_g000030 Rmu_sc0006705.1_g000009 Rmu_sc0020345.1_g000005
rosa_roxburghii	Rroxscaffold_5G00361940 Rroxscaffold_5G00362000
rosa_rugosa	Rorug04G0154800 Rorug04G0154800
rosa_samantha	Rh4BG214200 Rh4CG228300 Rh4CG228600 Rh4DG215500
rosa_wichuraiana	Rw4G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	896
Acc36I	ACCTGC	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	1022
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	3 cut(s)	858, 1007, 1020
AcoI	YGGCCR	2 cut(s)	192, 868
AcsI	RAATTY	3 cut(s)	58, 358, 496
AcuI	CTGAAG	1 cut(s)	383
AfaI	GTAC	4 cut(s)	167, 244, 955, 1033
AfiI	CCNNNNNNNGG	2 cut(s)	555, 1022
AgsI	TTSAA	7 cut(s)	280, 407, 463, 677, 720, 818, 1003
AjnI	CCWGG	2 cut(s)	855, 1136
AluBI	AGCT	4 cut(s)	31, 287, 580, 866
AluI	AGCT	4 cut(s)	31, 287, 580, 866
Alw26I	GTCTC	2 cut(s)	619, 675
AlwI	GGATC	3 cut(s)	858, 1007, 1020
AoxI	GGCC	3 cut(s)	192, 868, 1080
ApeKI	GCWGC	5 cut(s)	28, 310, 389, 662, 947
ApoI	RAATTY	3 cut(s)	58, 358, 496
AspLEI	GCGC	1 cut(s)	649
AsuC2I	CCSGG	2 cut(s)	319, 872
AsuHPI	GGTGA	2 cut(s)	76, 1126
BaeGI	GKGCMC	3 cut(s)	458, 938, 1144
BalI	TGGCCA	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	1012
BarI	GAAGNNNNNNTAC	2 cut(s)	791, 823
BbsI	GAAGAC	1 cut(s)	319
BbvI	GCAGC	5 cut(s)	40, 297, 376, 674, 934
BccI	CCATC	5 cut(s)	29, 208, 248, 539, 1024
BciT130I	CCWGG	2 cut(s)	857, 1138
BcnI	CCSGG	2 cut(s)	319, 872
BcoDI	GTCTC	2 cut(s)	619, 675
BfaI	CTAG	1 cut(s)	971
BfoI	RGCGCY	1 cut(s)	650
BfuAI	ACCTGC	1 cut(s)	359
BisI	GCNGC	5 cut(s)	29, 311, 390, 663, 948
BlsI	GCNGC	5 cut(s)	30, 312, 391, 664, 949
Bme1390I	CCNGG	4 cut(s)	319, 857, 872, 1138
BmiI	GGNNCC	1 cut(s)	1014
BmrFI	CCNGG	4 cut(s)	319, 857, 872, 1138
BmsI	GCATC	5 cut(s)	111, 423, 440, 871, 1051
BpiI	GAAGAC	1 cut(s)	319
BplI	GAGNNNNNCTC	2 cut(s)	1067, 1099
BpuMI	CCSGG	2 cut(s)	319, 872
BsaJI	CCNNGG	4 cut(s)	620, 652, 856, 1137
Bsc4I	CCNNNNNNNGG	2 cut(s)	555, 1022
Bse3DI	GCAATG	2 cut(s)	312, 672
BseBI	CCWGG	2 cut(s)	857, 1138
BseDI	CCNNGG	4 cut(s)	620, 652, 856, 1137
BseGI	GGATG	1 cut(s)	219
BseLI	CCNNNNNNNGG	2 cut(s)	555, 1022
BseMI	GCAATG	2 cut(s)	312, 672
BseMII	CTCAG	1 cut(s)	876
BseRI	GAGGAG	1 cut(s)	1091
BseSI	GKGCMC	3 cut(s)	458, 938, 1144
BseXI	GCAGC	5 cut(s)	40, 297, 376, 674, 934
BseYI	CCCAGC	1 cut(s)	773
BshFI	GGCC	3 cut(s)	194, 870, 1082
BsiSI	CCGG	2 cut(s)	318, 871
BslI	CCNNNNNNNGG	2 cut(s)	555, 1022
BsmAI	GTCTC	2 cut(s)	619, 675
BsmI	GAATGC	2 cut(s)	445, 631
BsnI	GGCC	3 cut(s)	194, 870, 1082
Bsp1286I	GDGCHC	3 cut(s)	458, 938, 1144
Bsp1407I	TGTACA	1 cut(s)	953
Bsp143I	GATC	4 cut(s)	351, 850, 1012, 1131
Bsp19I	CCATGG	1 cut(s)	620
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	3 cut(s)	194, 870, 1082
BspCNI	CTCAG	1 cut(s)	877
BspLI	GGNNCC	1 cut(s)	1014
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	3 cut(s)	858, 1007, 1020
BsrDI	GCAATG	2 cut(s)	312, 672
BsrGI	TGTACA	1 cut(s)	953
BssECI	CCNNGG	4 cut(s)	620, 652, 856, 1137
BssMI	GATC	4 cut(s)	351, 850, 1012, 1131
BssT1I	CCWWGG	1 cut(s)	620
Bst2UI	CCWGG	2 cut(s)	857, 1138
Bst4CI	ACNGT	3 cut(s)	334, 1008, 1146
Bst6I	CTCTTC	1 cut(s)	613
BstAUI	TGTACA	1 cut(s)	953
BstC8I	GCNNGC	3 cut(s)	315, 868, 905
BstDEI	CTNAG	4 cut(s)	171, 740, 885, 1112
BstDSI	CCRYGG	2 cut(s)	620, 652
BstF5I	GGATG	1 cut(s)	219
BstH2I	RGCGCY	1 cut(s)	650
BstHHI	GCGC	1 cut(s)	649
BstKTI	GATC	4 cut(s)	354, 853, 1015, 1134
BstMAI	GTCTC	2 cut(s)	619, 675
BstMBI	GATC	4 cut(s)	351, 850, 1012, 1131
BstMWI	GCNNNNNNNGC	1 cut(s)	1102
BstNI	CCWGG	2 cut(s)	857, 1138
BstNSI	RCATGY	4 cut(s)	428, 662, 907, 954
BstSCI	CCNGG	4 cut(s)	317, 855, 870, 1136
BstSLI	GKGCMC	3 cut(s)	458, 938, 1144
BstV1I	GCAGC	5 cut(s)	40, 297, 376, 674, 934
BstV2I	GAAGAC	1 cut(s)	319
BstX2I	RGATCY	2 cut(s)	850, 1012
BstYI	RGATCY	2 cut(s)	850, 1012
BsuRI	GGCC	3 cut(s)	194, 870, 1082
BtgI	CCRYGG	2 cut(s)	620, 652
BtsCI	GGATG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	3 cut(s)	315, 868, 905
CfoI	GCGC	1 cut(s)	649
Csp6I	GTAC	4 cut(s)	166, 243, 954, 1032
CviQI	GTAC	4 cut(s)	166, 243, 954, 1032
DdeI	CTNAG	4 cut(s)	171, 740, 885, 1112
DpnI	GATC	4 cut(s)	353, 852, 1014, 1133
DpnII	GATC	4 cut(s)	351, 850, 1012, 1131
EaeI	YGGCCR	2 cut(s)	192, 868
Eam1104I	CTCTTC	1 cut(s)	613
EarI	CTCTTC	1 cut(s)	613
Eco130I	CCWWGG	1 cut(s)	620
Eco147I	AGGCCT	1 cut(s)	1082
Eco57I	CTGAAG	1 cut(s)	383
EcoRII	CCWGG	2 cut(s)	855, 1136
EcoT14I	CCWWGG	1 cut(s)	620
EcoT22I	ATGCAT	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	620
FauI	CCCGC	1 cut(s)	87
FauNDI	CATATG	1 cut(s)	488
Fnu4HI	GCNGC	5 cut(s)	29, 311, 390, 663, 948
FokI	GGATG	1 cut(s)	226
Fsp4HI	GCNGC	5 cut(s)	29, 311, 390, 663, 948
FspBI	CTAG	1 cut(s)	971
GlaI	GCGC	1 cut(s)	648
GluI	GCNGC	5 cut(s)	29, 311, 390, 663, 948
GsaI	CCCAGC	1 cut(s)	777
HaeII	RGCGCY	1 cut(s)	650
HaeIII	GGCC	3 cut(s)	194, 870, 1082
HapII	CCGG	2 cut(s)	318, 871
HhaI	GCGC	1 cut(s)	649
Hin6I	GCGC	1 cut(s)	647
HinP1I	GCGC	1 cut(s)	647
HindIII	AAGCTT	1 cut(s)	285
HinfI	GANTC	2 cut(s)	735, 967
HpaII	CCGG	2 cut(s)	318, 871
HphI	GGTGA	2 cut(s)	76, 1126
Hpy166II	GTNNAC	1 cut(s)	808
Hpy188I	TCNGA	3 cut(s)	510, 688, 734
Hpy188III	TCNNGA	2 cut(s)	674, 971
Hpy8I	GTNNAC	1 cut(s)	808
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	61, 907
HpyCH4III	ACNGT	3 cut(s)	334, 1008, 1146
HpyCH4IV	ACGT	2 cut(s)	228, 938
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1102
HpyF3I	CTNAG	4 cut(s)	171, 740, 885, 1112
HpySE526I	ACGT	2 cut(s)	228, 938
HspAI	GCGC	1 cut(s)	647
Kzo9I	GATC	4 cut(s)	351, 850, 1012, 1131
LmnI	GCTCC	2 cut(s)	421, 654
Lsp1109I	GCAGC	5 cut(s)	40, 297, 376, 674, 934
LweI	GCATC	5 cut(s)	111, 423, 440, 871, 1051
MaeI	CTAG	1 cut(s)	971
MaeII	ACGT	2 cut(s)	228, 938
MaeIII	GTNAC	2 cut(s)	701, 1124
MalI	GATC	4 cut(s)	353, 852, 1014, 1133
MboI	GATC	4 cut(s)	351, 850, 1012, 1131
MboII	GAAGA	5 cut(s)	319, 389, 600, 811, 890
MflI	RGATCY	2 cut(s)	850, 1012
MhlI	GDGCHC	3 cut(s)	458, 938, 1144
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	7 cut(s)	58, 358, 496, 517, 715, 891, 1035
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	744
MmeI	TCCRAC	2 cut(s)	990, 1071
MnlI	CCTC	9 cut(s)	204, 315, 516, 616, 763, 774, 1069, 1072, 1093
Mox20I	TGGCCA	1 cut(s)	194
Mph1103I	ATGCAT	1 cut(s)	484
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	5 cut(s)	21, 158, 575, 789, 828
MslI	CAYNNNNRTG	5 cut(s)	335, 487, 539, 657, 908
Msp20I	TGGCCA	1 cut(s)	194
MspI	CCGG	2 cut(s)	318, 871
MspR9I	CCNGG	4 cut(s)	319, 857, 872, 1138
Mva1269I	GAATGC	2 cut(s)	445, 631
MvaI	CCWGG	2 cut(s)	857, 1138
MwoI	GCNNNNNNNGC	1 cut(s)	1102
NciI	CCSGG	2 cut(s)	319, 872
NcoI	CCATGG	1 cut(s)	620
NdeI	CATATG	1 cut(s)	488
NdeII	GATC	4 cut(s)	351, 850, 1012, 1131
NlaIV	GGNNCC	1 cut(s)	1014
NmuCI	GTSAC	1 cut(s)	701
NsiI	ATGCAT	1 cut(s)	484
NspI	RCATGY	4 cut(s)	428, 662, 907, 954
PaeI	GCATGC	1 cut(s)	907
PceI	AGGCCT	1 cut(s)	1082
PctI	GAATGC	2 cut(s)	445, 631
PfeI	GAWTC	1 cut(s)	967
PflMI	CCANNNNNTGG	1 cut(s)	1022
PkrI	GCNGC	5 cut(s)	30, 312, 391, 664, 949
PleI	GAGTC	1 cut(s)	743
PpsI	GAGTC	1 cut(s)	743
PsiI	TTATAA	1 cut(s)	896
Psp6I	CCWGG	2 cut(s)	855, 1136
PspFI	CCCAGC	1 cut(s)	773
PspGI	CCWGG	2 cut(s)	855, 1136
PspN4I	GGNNCC	1 cut(s)	1014
PsuI	RGATCY	2 cut(s)	850, 1012
RsaI	GTAC	4 cut(s)	167, 244, 955, 1033
RsaNI	GTAC	4 cut(s)	166, 243, 954, 1032
RseI	CAYNNNNRTG	5 cut(s)	335, 487, 539, 657, 908
SaqAI	TTAA	5 cut(s)	21, 158, 575, 789, 828
SatI	GCNGC	5 cut(s)	29, 311, 390, 663, 948
Sau3AI	GATC	4 cut(s)	351, 850, 1012, 1131
SchI	GAGTC	1 cut(s)	744
ScrFI	CCNGG	4 cut(s)	319, 857, 872, 1138
SduI	GDGCHC	3 cut(s)	458, 938, 1144
SfaNI	GCATC	5 cut(s)	111, 423, 440, 871, 1051
SmiMI	CAYNNNNRTG	5 cut(s)	335, 487, 539, 657, 908
SphI	GCATGC	1 cut(s)	907
Sse9I	AATT	7 cut(s)	58, 358, 496, 517, 715, 891, 1035
SseBI	AGGCCT	1 cut(s)	1082
SsiI	CCGC	1 cut(s)	94
SspI	AATATT	1 cut(s)	681
SspMI	CTAG	1 cut(s)	971
StuI	AGGCCT	1 cut(s)	1082
StyD4I	CCNGG	4 cut(s)	317, 855, 870, 1136
StyI	CCWWGG	1 cut(s)	620
TaaI	ACNGT	3 cut(s)	334, 1008, 1146
TaiI	ACGT	2 cut(s)	231, 941
TaqI	TCGA	1 cut(s)	53
TasI	AATT	7 cut(s)	58, 358, 496, 517, 715, 891, 1035
TatI	WGTACW	2 cut(s)	953, 1031
TfiI	GAWTC	1 cut(s)	967
Tru1I	TTAA	5 cut(s)	21, 158, 575, 789, 828
Tru9I	TTAA	5 cut(s)	21, 158, 575, 789, 828
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	701
TseI	GCWGC	5 cut(s)	28, 310, 389, 662, 947
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	6 cut(s)	236, 297, 333, 718, 812, 926
TspGWI	ACGGA	1 cut(s)	669
TspRI	CASTG	1 cut(s)	337
Van91I	CCANNNNNTGG	1 cut(s)	1022
XapI	RAATTY	3 cut(s)	58, 358, 496
XbaI	TCTAGA	1 cut(s)	970
XceI	RCATGY	4 cut(s)	428, 662, 907, 954
XspI	CTAG	1 cut(s)	971
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.