Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005804

Physical Location & Seq

Genomic Coordinates Reverse (-)

15661127 .. 15662008

Gene Structure 882 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1182700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCACCAGAGTGATCAACCTGAATTAGCTCTAGAACTCCTTCAAAGAATGGTAGCTAGTGGGATCCGACCGAATGAAATTACAATGGTGAGTGTGTTATCTGGCATTGCTACATTAGGCACATTGAAAGAGGCAAGATGGGCACACAAATATATAGTTGAAAACTCCATTCCTCTTAATGACAATCTAAGTGCAGCACTCATTGATATGTATGCCAAATGTGGATGTATCAATACTGCCTTAGAGGTGTTGTTTCAAATCCGAGATAAAACCTCTACAGTCTCACCATGGAATGCCATCATATGTGGGTCGGCCATGTACGGACATGCAAAGTTATCTCTTGAAATATTTTCAGACTTACAAAAGCGTAATATCAAACTCAATTCAATCACATTCATCGGAGTCCTAAGTGCATGTTGCCACGCTGGCTTCGTGGAGGCGGGGGAGAGGTACTTTAAGAGCATGAAGAATGTTTACAATGTAGAACCAAATATCAAGCATTATGGTTGTATGGTGGATCTCCTTGGAAGAGCTGGTCGAGTAGAAGATGCTGAGAAAATGATAAGGAGCATGCCCATGAAGGCTGATGTAGTCATATGGGGCACGCTGCCTGGGAATCTGGAAAGAGGAGAAATGGCTTCAGAGAGTTTGACAAGGTTGCAACCATCTCATGGGCCAGTTAGAGTTCTCCTATCCAATTTATACGCGGATGCAGGGAAGTGGCCATCACAGTGTTCCGCTCTGCAGTCAATACATTTTGCAGAAATTGCGCGATTAACGCAATGGCCATCACAGTGTTCCAACTCTGCAGTCTCTCGTATTGTTCATTCCTCTCCTCATGATGATTTTCGAGACCATCTATGTCCGTGTCTTGGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

294

Amino Acids

32.36

Weight (kDa)

7.12

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	97 - 141	2.5e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19020
fragaria_vesca	FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290
malus_domestica	MD13G1182300.v1.1 MD16G1182700.v1.1
prunus_persica	Prupe.1G150200_v2.0.a1
pyrus_communis	pycom13g15730
rosa_chinensis	RchiOBHm_Chr4g0418731 RchiOBHm_Chr4g0418821
rosa_laevigata	RLG00000007842
rosa_multiflora	Rmu_sc0000935.1_g000016 Rmu_sc0000935.1_g000030 Rmu_sc0006705.1_g000009 Rmu_sc0020345.1_g000005
rosa_roxburghii	Rroxscaffold_5G00361940 Rroxscaffold_5G00362000
rosa_rugosa	Rorug04G0154800 Rorug04G0154800
rosa_samantha	Rh4BG214200 Rh4CG228300 Rh4CG228600 Rh4DG215500
rosa_wichuraiana	Rw4G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	671
AccBSI	CCGCTC	1 cut(s)	740
AccII	CGCG	2 cut(s)	707, 772
AciI	CCGC	3 cut(s)	440, 707, 738
AclWI	GGATC	3 cut(s)	58, 71, 525
AcoI	YGGCCR	3 cut(s)	312, 722, 785
AcuI	CTGAAG	1 cut(s)	624
AfaI	GTAC	2 cut(s)	320, 452
AfiI	CCNNNNNNNGG	2 cut(s)	671, 872
AgsI	TTSAA	6 cut(s)	44, 127, 161, 257, 344, 387
AjnI	CCWGG	1 cut(s)	610
AleI	CACNNNNGTG	1 cut(s)	9
AluBI	AGCT	3 cut(s)	29, 56, 533
AluI	AGCT	3 cut(s)	29, 56, 533
Alw26I	GTCTC	3 cut(s)	286, 817, 846
AlwI	GGATC	3 cut(s)	58, 71, 525
AoxI	GGCC	4 cut(s)	312, 674, 722, 785
ApeKI	GCWGC	2 cut(s)	194, 607
Asp700I	GAANNNNTTC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	772
AspS9I	GGNCC	1 cut(s)	674
AsuHPI	GGTGA	2 cut(s)	100, 276
BaeGI	GKGCMC	2 cut(s)	145, 605
BalI	TGGCCA	2 cut(s)	724, 787
BamHI	GGATCC	1 cut(s)	63
BarI	GAAGNNNNNNTAC	2 cut(s)	458, 490
BbvI	GCAGC	2 cut(s)	206, 594
BccI	CCATC	6 cut(s)	132, 305, 673, 733, 796, 864
BciT130I	CCWGG	1 cut(s)	612
BclI	TGATCA	1 cut(s)	13
BcoDI	GTCTC	3 cut(s)	286, 817, 846
BfaI	CTAG	2 cut(s)	32, 57
BfmI	CTRYAG	3 cut(s)	276, 743, 807
BglI	GCCNNNNNGGC	1 cut(s)	426
BisI	GCNGC	2 cut(s)	195, 608
BlsI	GCNGC	2 cut(s)	196, 609
Bme1390I	CCNGG	1 cut(s)	612
BmgT120I	GGNCC	1 cut(s)	674
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	612
BmsI	GCATC	2 cut(s)	538, 700
BsaI	GGTCTC	1 cut(s)	846
BsaJI	CCNNGG	3 cut(s)	287, 523, 611
Bsc4I	CCNNNNNNNGG	2 cut(s)	671, 872
Bse1I	ACTGG	1 cut(s)	677
Bse3DI	GCAATG	2 cut(s)	105, 788
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	3 cut(s)	287, 523, 611
BseGI	GGATG	2 cut(s)	230, 715
BseLI	CCNNNNNNNGG	2 cut(s)	671, 872
BseMI	GCAATG	2 cut(s)	105, 788
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	1 cut(s)	677
BseRI	GAGGAG	2 cut(s)	642, 825
BseSI	GKGCMC	2 cut(s)	145, 605
BseXI	GCAGC	2 cut(s)	206, 594
BsgI	GTGCAG	1 cut(s)	213
Bsh1236I	CGCG	2 cut(s)	707, 772
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	4 cut(s)	314, 676, 724, 787
BsiEI	CGRYCG	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	671, 872
BsmAI	GTCTC	3 cut(s)	286, 817, 846
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	4 cut(s)	314, 676, 724, 787
Bso31I	GGTCTC	1 cut(s)	846
Bsp1286I	GDGCHC	2 cut(s)	145, 605
Bsp143I	GATC	3 cut(s)	13, 63, 517
Bsp19I	CCATGG	1 cut(s)	287
BspACI	CCGC	3 cut(s)	440, 707, 738
BspANI	GGCC	4 cut(s)	314, 676, 724, 787
BspCNI	CTCAG	1 cut(s)	544
BspFNI	CGCG	2 cut(s)	707, 772
BspHI	TCATGA	1 cut(s)	838
BspLI	GGNNCC	1 cut(s)	65
BspMAI	CTGCAG	2 cut(s)	747, 811
BspPI	GGATC	3 cut(s)	58, 71, 525
BspQI	GCTCTTC	1 cut(s)	523
BspTNI	GGTCTC	1 cut(s)	846
BsrBI	CCGCTC	1 cut(s)	740
BsrDI	GCAATG	2 cut(s)	105, 788
BsrI	ACTGG	1 cut(s)	677
BssECI	CCNNGG	3 cut(s)	287, 523, 611
BssMI	GATC	3 cut(s)	13, 63, 517
BssT1I	CCWWGG	2 cut(s)	287, 523
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	3 cut(s)	280, 732, 795
Bst6I	CTCTTC	1 cut(s)	523
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstC8I	GCNNGC	3 cut(s)	427, 572, 605
BstDEI	CTNAG	4 cut(s)	188, 241, 407, 552
BstDSI	CCRYGG	1 cut(s)	287
BstF5I	GGATG	2 cut(s)	230, 715
BstFNI	CGCG	2 cut(s)	707, 772
BstHHI	GCGC	1 cut(s)	772
BstKTI	GATC	3 cut(s)	16, 66, 520
BstMAI	GTCTC	3 cut(s)	286, 817, 846
BstMBI	GATC	3 cut(s)	13, 63, 517
BstMCI	CGRYCG	1 cut(s)	71
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 426, 767, 778
BstNI	CCWGG	1 cut(s)	612
BstNSI	RCATGY	3 cut(s)	329, 417, 574
BstSCI	CCNGG	1 cut(s)	610
BstSFI	CTRYAG	3 cut(s)	276, 743, 807
BstSLI	GKGCMC	2 cut(s)	145, 605
BstUI	CGCG	2 cut(s)	707, 772
BstV1I	GCAGC	2 cut(s)	206, 594
BstX2I	RGATCY	2 cut(s)	63, 517
BstYI	RGATCY	2 cut(s)	63, 517
BsuRI	GGCC	4 cut(s)	314, 676, 724, 787
BtgI	CCRYGG	1 cut(s)	287
BtsCI	GGATG	2 cut(s)	230, 715
BtsIMutI	CAGTG	2 cut(s)	737, 800
Cac8I	GCNNGC	3 cut(s)	427, 572, 605
CciI	TCATGA	1 cut(s)	838
CfoI	GCGC	1 cut(s)	772
Cfr13I	GGNCC	1 cut(s)	674
Csp6I	GTAC	2 cut(s)	319, 451
CviAII	CATG	9 cut(s)	288, 316, 326, 414, 463, 571, 577, 671, 839
CviQI	GTAC	2 cut(s)	319, 451
DdeI	CTNAG	4 cut(s)	188, 241, 407, 552
DpnI	GATC	3 cut(s)	15, 65, 519
DpnII	GATC	3 cut(s)	13, 63, 517
EaeI	YGGCCR	3 cut(s)	312, 722, 785
Eam1104I	CTCTTC	1 cut(s)	523
EarI	CTCTTC	1 cut(s)	523
Eco130I	CCWWGG	2 cut(s)	287, 523
Eco31I	GGTCTC	1 cut(s)	846
Eco57I	CTGAAG	1 cut(s)	624
EcoRII	CCWGG	1 cut(s)	610
EcoT14I	CCWWGG	2 cut(s)	287, 523
ErhI	CCWWGG	2 cut(s)	287, 523
FaeI	CATG	9 cut(s)	291, 319, 329, 417, 466, 574, 580, 674, 842
FatI	CATG	9 cut(s)	287, 315, 325, 413, 462, 570, 576, 670, 838
FauI	CCCGC	1 cut(s)	433
FauNDI	CATATG	2 cut(s)	302, 596
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	2 cut(s)	195, 608
FokI	GGATG	2 cut(s)	237, 722
Fsp4HI	GCNGC	2 cut(s)	195, 608
FspBI	CTAG	2 cut(s)	32, 57
GlaI	GCGC	1 cut(s)	771
GluI	GCNGC	2 cut(s)	195, 608
HaeIII	GGCC	4 cut(s)	314, 676, 724, 787
HhaI	GCGC	1 cut(s)	772
Hin1II	CATG	9 cut(s)	291, 319, 329, 417, 466, 574, 580, 674, 842
Hin6I	GCGC	1 cut(s)	770
HinP1I	GCGC	1 cut(s)	770
HinfI	GANTC	2 cut(s)	402, 616
HphI	GGTGA	2 cut(s)	100, 276
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	5 cut(s)	68, 263, 355, 401, 643
Hpy188III	TCNNGA	5 cut(s)	32, 341, 620, 839, 851
Hpy8I	GTNNAC	1 cut(s)	475
HpyAV	CCTTC	2 cut(s)	50, 574
HpyCH4III	ACNGT	3 cut(s)	280, 732, 795
HpyCH4V	TGCA	9 cut(s)	4, 194, 329, 413, 661, 713, 745, 761, 809
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 426, 767, 778
HpyF3I	CTNAG	4 cut(s)	188, 241, 407, 552
Hsp92II	CATG	9 cut(s)	291, 319, 329, 417, 466, 574, 580, 674, 842
HspAI	GCGC	1 cut(s)	770
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	3 cut(s)	13, 63, 517
LguI	GCTCTTC	1 cut(s)	523
LmnI	GCTCC	1 cut(s)	567
Lsp1109I	GCAGC	2 cut(s)	206, 594
LweI	GCATC	2 cut(s)	538, 700
MaeI	CTAG	2 cut(s)	32, 57
MalI	GATC	3 cut(s)	15, 65, 519
MbiI	CCGCTC	1 cut(s)	740
MboI	GATC	3 cut(s)	13, 63, 517
MboII	GAAGA	3 cut(s)	478, 540, 557
MflI	RGATCY	2 cut(s)	63, 517
MhlI	GDGCHC	2 cut(s)	145, 605
MlsI	TGGCCA	2 cut(s)	724, 787
MluCI	AATT	5 cut(s)	23, 78, 382, 697, 765
MluNI	TGGCCA	2 cut(s)	724, 787
MlyI	GAGTC	1 cut(s)	411
MmeI	TCCRAC	2 cut(s)	91, 825
MnlI	CCTC	9 cut(s)	124, 183, 238, 283, 430, 441, 620, 841, 846
Mox20I	TGGCCA	2 cut(s)	724, 787
MroXI	GAANNNNTTC	1 cut(s)	39
MscI	TGGCCA	2 cut(s)	724, 787
MseI	TTAA	3 cut(s)	177, 456, 776
MslI	CAYNNNNRTG	5 cut(s)	9, 206, 575, 730, 793
Msp20I	TGGCCA	2 cut(s)	724, 787
MspR9I	CCNGG	1 cut(s)	612
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	612
MvnI	CGCG	2 cut(s)	707, 772
MwoI	GCNNNNNNNGC	4 cut(s)	140, 426, 767, 778
NcoI	CCATGG	1 cut(s)	287
NdeI	CATATG	2 cut(s)	302, 596
NdeII	GATC	3 cut(s)	13, 63, 517
NlaIII	CATG	9 cut(s)	291, 319, 329, 417, 466, 574, 580, 674, 842
NlaIV	GGNNCC	1 cut(s)	65
NspI	RCATGY	3 cut(s)	329, 417, 574
OliI	CACNNNNGTG	1 cut(s)	9
PaeI	GCATGC	1 cut(s)	574
PagI	TCATGA	1 cut(s)	838
PciSI	GCTCTTC	1 cut(s)	523
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PctI	GAATGC	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	616
PflMI	CCANNNNNTGG	1 cut(s)	671
PkrI	GCNGC	2 cut(s)	196, 609
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
Psp6I	CCWGG	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	674
PstI	CTGCAG	2 cut(s)	747, 811
PsuI	RGATCY	2 cut(s)	63, 517
RsaI	GTAC	2 cut(s)	320, 452
RsaNI	GTAC	2 cut(s)	319, 451
RseI	CAYNNNNRTG	5 cut(s)	9, 206, 575, 730, 793
SapI	GCTCTTC	1 cut(s)	523
SaqAI	TTAA	3 cut(s)	177, 456, 776
SatI	GCNGC	2 cut(s)	195, 608
Sau3AI	GATC	3 cut(s)	13, 63, 517
Sau96I	GGNCC	1 cut(s)	674
SchI	GAGTC	1 cut(s)	411
ScrFI	CCNGG	1 cut(s)	612
SduI	GDGCHC	2 cut(s)	145, 605
SetI	ASST	8 cut(s)	22, 31, 58, 249, 275, 452, 535, 659
SfaNI	GCATC	2 cut(s)	538, 700
SfcI	CTRYAG	3 cut(s)	276, 743, 807
SmiMI	CAYNNNNRTG	5 cut(s)	9, 206, 575, 730, 793
SphI	GCATGC	1 cut(s)	574
Sse9I	AATT	5 cut(s)	23, 78, 382, 697, 765
SsiI	CCGC	3 cut(s)	440, 707, 738
SspI	AATATT	1 cut(s)	348
SspMI	CTAG	2 cut(s)	32, 57
StyD4I	CCNGG	1 cut(s)	610
StyI	CCWWGG	2 cut(s)	287, 523
TaaI	ACNGT	3 cut(s)	280, 732, 795
TaqI	TCGA	2 cut(s)	538, 850
TaqII	GACCGA	1 cut(s)	85
TasI	AATT	5 cut(s)	23, 78, 382, 697, 765
TfiI	GAWTC	1 cut(s)	616
Tru1I	TTAA	3 cut(s)	177, 456, 776
Tru9I	TTAA	3 cut(s)	177, 456, 776
TscAI	CASTG	2 cut(s)	737, 800
TseI	GCWGC	2 cut(s)	194, 607
TspDTI	ATGAA	5 cut(s)	90, 385, 479, 593, 815
TspGWI	ACGGA	2 cut(s)	336, 855
TspRI	CASTG	2 cut(s)	737, 800
Van91I	CCANNNNNTGG	1 cut(s)	671
XbaI	TCTAGA	1 cut(s)	31
XceI	RCATGY	3 cut(s)	329, 417, 574
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	2 cut(s)	32, 57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.