Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005804

Physical Location & Seq

Genomic Coordinates Reverse (-)

21850237 .. 21855444

Gene Structure 5208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007842

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2337 bp

ATGCTCATATCTCTGAGACCCAAATCCCTCACCGGCCTTCCACACCTTTCTGCTACTTCATCTCTCAAATGGGTCTCCACAGCCACCACCCAAACCCCAGAGGACCATCTGCGTCTCTTCTTCAAATCCAGACCGAACCAAACCCACATCGACTACGAGCGCCAATTGGTCTCTCTTTTAAAATCTTGCGCAACCCTTTCGGCCCTCTTCCAAGGCCAGCAACTCCATTCCCTTGTTCTCAAGTCCGGTCTCGACTCCAACACTTTCATCAACAACAGTTTGATTAGCATGTATGCCAAATGCGGCTCCATTTCCGGCGCCGAATCGTTGTTCCGCTCTTGTTCTGAGCCGGACCCGGTTTCCTGTAATATCATGGTTGCTGGGTATGTGAAATCTGGTGACTTGGACAATGCCCGCCACGTGTTTGATAAAATGCCTGAGAGAGGTTGTGTCTCGTATACTACTATGATAATGGGTCTTTCTAGAAATGGGTTTTGGAGGGAGGCTGTTGAGGTTTTTAGGGATATGAGGAATGCCGGTGTGATGCCGAATGAGCTGACAATGGGGACTGTGATCTCGACGTTTTCGCATTTGGGTGGGATTTGGAATTGTAGAATGCTTCATGGTTTGGTGGTTAAGTTGCAGCTTGATGGAATGGTGCTTGTTTCGACGAATTTGGTGAAGGTTTATTGTGCTTGTAAGAGTGTGTGGGAAGCGAGAAGTTTGTTTGATGAGATGCCCGAAAGGAATATAGTTTCGTGGAATGTCATGTTGAATGGGTACTGTAAGGCTGGACTTGTGCATTTGGCAAGAGAGTTGTTCGAGAGGATTGATAGGAAAGATGTGGTTTCGTGGGGTACGATGATTGATGGGTATGTGCAAGTGGAGTGCTTGAGTGAAGCTTTGATGATGTATCGTGCAATGCTGCGTGCCGGGTTGGGACCGAATGATGTTATGCTTGTTGACTTAATTTCAGTGTGTGGGAGATTGGAGGCGATTCGTGAAGGCCAGCAATTCCATGGGAGAATTGTCAAGGAGGGTTTTGACTGTTATGATTTCATACAGGCAACGATCATAAATTTTTATGCAGGTTGTGGGGAAATGATTGCTGCTCGTCTTCAGTTTGAAAAGGGCATCAAGGAGCATGTAGCATCTTGGAATGCTCTCATTGCAGGGTACATAAGAAATCAAATGATTGACCAAGCAAGTCTATTGTTTGATGAGATGCCTGAAAGGGATGTTTTTTCATGGAGTTCCATGATTTCTGGTTACACACAGACTGAGCAATCTAAATTGGCTCTGGAACTTTTCCAAAGAATGGCATCTAGTGGGATACAACCAAATGAAATAACAATGGTAAGCGTTTTGTCTGCAATCGCTGATTTAGGCACATTGAAAGAAGGAATATGGGCTCATGAATACATATGTGAAAATTCTATTCCTCTGAATGACAATTTGAGTGCAGCTATCATTGATATGTATGCCAAATGTGGGAGTATCAATACTGCCTTAAAGGTGTTCTATCAAATCCAAGACAAAACCTCTTCTGTCTCACCATGGAATGCCATTATATGTGGGTTGGCGCTGCACGGACATGCAGCAATGTCTCTTGAAATATTTTCAGACTTGCAAAGGCGTGATATCAAACTCAATTCAATAACATTCATCGGAGTCCTAAGTGCTTGTTGCCATTCTGGTTTGGTGGAGGCCGGGGAGAGGTATTTTAAGAGCATGAAGAATGTATACCACATTCAACCAAACATTAAGCATTATGGTTGTATGGTGGATCTCCTGGGTAGAGCTGGCCGAGTAGAAGATACTGAGAAAATGATAAGAAGCATGCCCATGAAGGCTGATGTTGTGATATGGGGCACATTATTGGCCGCATGTACAACACATGGGAATCTAGAAATAGGAGAAATGGCTGAAAAGAATTTGAAACTGTTGGATCCATCTCATGGGGCAAGTACAGTTCTCATGTCCAACCTACTTGCAGATGCAGGGAAGTGGGAGGAAGCCTCTTTGGAAAGGCGAAGATCACCAGTTGCAAAGGGCTTGAATTTCTCTGTTTTCCTCTTTCAAGCTCCGTTGAAGGAAGCTGACCAGGGACAAGAGAGATTGAAAGAGTTAAATAAATTGATGTTGTCAATACCTACTCCCTTGTGTGGTTGCTTCCCTAATTCCAATTGTTGGTGGGGGTGGGACTGGCATCGGTCACTGAGACCTTGTTTAACTGATTCTGGAGGGCTATTGCTTTTTTTCTTCTGCACTGGAGTGCTCCTACTTGAACTGCATCACATCCCCAAAAGAGGAGTTGGAATTTTTATTCACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

779

Amino Acids

86.83

Weight (kDa)

6.63

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	117 - 150	2.1e-06	PPR repeat family
PPR	PF01535	120 - 150	7e-07	PPR repeat
PPR_1	PF12854	150 - 177	7.3e-06	PPR repeat
PPR	PF01535	151 - 181	7.8e-09	PPR repeat
PPR_2	PF13041	151 - 196	4e-10	PPR repeat family
PPR_2	PF13041	249 - 280	2.9e-06	PPR repeat family
PPR_1	PF12854	249 - 276	1.9e-06	PPR repeat
PPR	PF01535	252 - 281	2.2e-07	PPR repeat
PPR_2	PF13041	412 - 459	4.4e-09	PPR repeat family
PPR	PF01535	415 - 445	8e-06	PPR repeat
PPR_2	PF13041	519 - 564	6e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19020
fragaria_vesca	FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290
malus_domestica	MD13G1182300.v1.1 MD16G1182700.v1.1
prunus_persica	Prupe.1G150200_v2.0.a1
pyrus_communis	pycom13g15730
rosa_chinensis	RchiOBHm_Chr4g0418731 RchiOBHm_Chr4g0418821
rosa_laevigata	RLG00000007842
rosa_multiflora	Rmu_sc0000935.1_g000016 Rmu_sc0000935.1_g000030 Rmu_sc0006705.1_g000009 Rmu_sc0020345.1_g000005
rosa_roxburghii	Rroxscaffold_5G00361940 Rroxscaffold_5G00362000
rosa_rugosa	Rorug04G0154800 Rorug04G0154800
rosa_samantha	Rh4BG214200 Rh4CG228300 Rh4CG228600 Rh4DG215500
rosa_wichuraiana	Rw4G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	190
Acc36I	ACCTGC	1 cut(s)	1079
AccB1I	GGYRCC	1 cut(s)	317
AccB7I	CCANNNNNTGG	3 cut(s)	1318, 1958, 2190
AccBSI	CCGCTC	1 cut(s)	336
AccI	GTMKAC	2 cut(s)	458, 1743
AciI	CCGC	4 cut(s)	303, 334, 415, 1884
AclWI	GGATC	3 cut(s)	1794, 1943, 1956
AcoI	YGGCCR	2 cut(s)	1804, 1881
AcsI	RAATTY	6 cut(s)	673, 1078, 1432, 1933, 2059, 2319
AcuI	CTGAAG	1 cut(s)	1103
AcvI	CACGTG	1 cut(s)	421
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	5 cut(s)	782, 859, 1178, 1891, 1969
AfiI	CCNNNNNNNGG	8 cut(s)	443, 1318, 1491, 1716, 1958, 2165, 2190, 2309
AflIII	ACRYGT	1 cut(s)	420
AjnI	CCWGG	2 cut(s)	1791, 2103
AjuI	GAANNNNNNNTTGG	2 cut(s)	478, 510
AleI	CACNNNNGTG	1 cut(s)	2273
AluBI	AGCT	7 cut(s)	556, 646, 902, 1466, 1802, 2084, 2099
AluI	AGCT	7 cut(s)	556, 646, 902, 1466, 1802, 2084, 2099
Alw21I	GWGCWC	1 cut(s)	2280
Alw26I	GTCTC	9 cut(s)	10, 79, 119, 175, 254, 457, 1555, 1611, 2215
AlwI	GGATC	3 cut(s)	1794, 1943, 1956
AoxI	GGCC	7 cut(s)	34, 201, 214, 1006, 1707, 1804, 1881
ApeKI	GCWGC	6 cut(s)	643, 925, 1109, 1463, 1585, 1598
ApoI	RAATTY	6 cut(s)	673, 1078, 1432, 1933, 2059, 2319
AspLEI	GCGC	4 cut(s)	162, 191, 320, 1585
AspS9I	GGNCC	4 cut(s)	103, 202, 352, 941
AsuC2I	CCSGG	3 cut(s)	356, 934, 1711
AsuHPI	GGTGA	5 cut(s)	22, 410, 691, 1545, 2031
AvaII	GGWCC	3 cut(s)	103, 352, 941
BaeGI	GKGCMC	1 cut(s)	1874
BamHI	GGATCC	1 cut(s)	1948
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	1414
BarI	GAAGNNNNNNTAC	2 cut(s)	1727, 1759
BbrPI	CACGTG	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	1109
Bbv12I	GWGCWC	1 cut(s)	2280
BbvI	GCAGC	6 cut(s)	655, 912, 1096, 1475, 1572, 1610
BccI	CCATC	4 cut(s)	114, 644, 863, 1960
BcgI	CGANNNNNNTGC	2 cut(s)	180, 214
BciT130I	CCWGG	2 cut(s)	1793, 2105
BciVI	GTATCC	1 cut(s)	1326
BcnI	CCSGG	3 cut(s)	356, 934, 1711
BcoDI	GTCTC	9 cut(s)	10, 79, 119, 175, 254, 457, 1555, 1611, 2215
BfaI	CTAG	3 cut(s)	483, 1326, 1907
BfoI	RGCGCY	3 cut(s)	163, 321, 1586
BfuAI	ACCTGC	1 cut(s)	1079
BfuI	GTATCC	1 cut(s)	1326
BisI	GCNGC	8 cut(s)	304, 644, 926, 1110, 1464, 1586, 1599, 1884
BlsI	GCNGC	8 cut(s)	305, 645, 927, 1111, 1465, 1587, 1600, 1885
Bme1390I	CCNGG	5 cut(s)	356, 934, 1711, 1793, 2105
Bme18I	GGWCC	3 cut(s)	103, 352, 941
BmgT120I	GGNCC	4 cut(s)	103, 202, 352, 941
BmiI	GGNNCC	5 cut(s)	307, 319, 354, 942, 1950
BmrFI	CCNGG	5 cut(s)	356, 934, 1711, 1793, 2105
BmsI	GCATC	9 cut(s)	534, 726, 1143, 1160, 1215, 1331, 1987, 2218, 2302
BpiI	GAAGAC	1 cut(s)	1109
BplI	GAGNNNNNCTC	2 cut(s)	2003, 2035
BpmI	CTGGAG	2 cut(s)	2262, 2292
BpuEI	CTTGAG	2 cut(s)	224, 913
BpuMI	CCSGG	3 cut(s)	356, 934, 1711
BsaAI	YACGTR	1 cut(s)	421
BsaHI	GRCGYC	1 cut(s)	318
BsaI	GGTCTC	5 cut(s)	10, 79, 175, 254, 2215
BsaJI	CCNNGG	6 cut(s)	211, 1018, 1556, 1710, 1792, 2104
BsaWI	WCCGGW	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	8 cut(s)	443, 1318, 1491, 1716, 1958, 2165, 2190, 2309
Bse118I	RCCGGY	2 cut(s)	32, 536
Bse1I	ACTGG	3 cut(s)	2042, 2210, 2275
Bse3DI	GCAATG	3 cut(s)	927, 1167, 1608
BseBI	CCWGG	2 cut(s)	1793, 2105
BseDI	CCNNGG	6 cut(s)	211, 1018, 1556, 1710, 1792, 2104
BseGI	GGATG	2 cut(s)	1243, 2298
BseLI	CCNNNNNNNGG	8 cut(s)	443, 1318, 1491, 1716, 1958, 2165, 2190, 2309
BseMI	GCAATG	3 cut(s)	927, 1167, 1608
BseMII	CTCAG	6 cut(s)	5, 336, 429, 1272, 1812, 2210
BseNI	ACTGG	3 cut(s)	2042, 2210, 2275
BseRI	GAGGAG	1 cut(s)	2325
BseSI	GKGCMC	1 cut(s)	1874
BseXI	GCAGC	6 cut(s)	655, 912, 1096, 1475, 1572, 1610
BseYI	CCCAGC	1 cut(s)	380
BsgI	GTGCAG	3 cut(s)	1482, 1571, 2251
BshFI	GGCC	7 cut(s)	36, 203, 216, 1008, 1709, 1806, 1883
BshNI	GGYRCC	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	2280
BsiSI	CCGG	8 cut(s)	33, 246, 315, 350, 356, 537, 933, 1710
BslFI	GGGAC	4 cut(s)	580, 954, 2121, 2216
BslI	CCNNNNNNNGG	8 cut(s)	443, 1318, 1491, 1716, 1958, 2165, 2190, 2309
BsmAI	GTCTC	9 cut(s)	10, 79, 119, 175, 254, 457, 1555, 1611, 2215
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	4 cut(s)	580, 954, 2121, 2216
BsmI	GAATGC	4 cut(s)	538, 621, 1165, 1567
BsnI	GGCC	7 cut(s)	36, 203, 216, 1008, 1709, 1806, 1883
Bso31I	GGTCTC	5 cut(s)	10, 79, 175, 254, 2215
Bsp1286I	GDGCHC	3 cut(s)	1414, 1874, 2280
Bsp1407I	TGTACA	1 cut(s)	1889
Bsp143I	GATC	5 cut(s)	573, 1071, 1786, 1948, 2036
Bsp19I	CCATGG	2 cut(s)	1018, 1556
BspACI	CCGC	4 cut(s)	303, 334, 415, 1884
BspANI	GGCC	7 cut(s)	36, 203, 216, 1008, 1709, 1806, 1883
BspCNI	CTCAG	6 cut(s)	6, 337, 430, 1273, 1813, 2211
BspHI	TCATGA	1 cut(s)	1414
BspLI	GGNNCC	5 cut(s)	307, 319, 354, 942, 1950
BspMI	ACCTGC	1 cut(s)	1079
BspPI	GGATC	3 cut(s)	1794, 1943, 1956
BspT107I	GGYRCC	1 cut(s)	317
BspTNI	GGTCTC	5 cut(s)	10, 79, 175, 254, 2215
BsrBI	CCGCTC	1 cut(s)	336
BsrDI	GCAATG	3 cut(s)	927, 1167, 1608
BsrFI	RCCGGY	2 cut(s)	32, 536
BsrGI	TGTACA	1 cut(s)	1889
BsrI	ACTGG	3 cut(s)	2042, 2210, 2275
BssAI	RCCGGY	2 cut(s)	32, 536
BssECI	CCNNGG	6 cut(s)	211, 1018, 1556, 1710, 1792, 2104
BssMI	GATC	5 cut(s)	573, 1071, 1786, 1948, 2036
BssNAI	GTATAC	2 cut(s)	459, 1744
BssNI	GRCGYC	1 cut(s)	318
BssT1I	CCWWGG	3 cut(s)	211, 1018, 1556
Bst1107I	GTATAC	2 cut(s)	459, 1744
Bst2UI	CCWGG	2 cut(s)	1793, 2105
Bst4CI	ACNGT	6 cut(s)	278, 571, 785, 1049, 1944, 1972
Bst6I	CTCTTC	3 cut(s)	122, 212, 1549
BstACI	GRCGYC	1 cut(s)	318
BstAUI	TGTACA	1 cut(s)	1889
BstBAI	YACGTR	1 cut(s)	421
BstC8I	GCNNGC	6 cut(s)	218, 415, 930, 1010, 1804, 1841
BstDEI	CTNAG	7 cut(s)	14, 345, 438, 1281, 1676, 1821, 2219
BstDSI	CCRYGG	2 cut(s)	1018, 1556
BstENI	CCTNNNNNAGG	1 cut(s)	441
BstF5I	GGATG	2 cut(s)	1243, 2298
BstH2I	RGCGCY	3 cut(s)	163, 321, 1586
BstHHI	GCGC	4 cut(s)	162, 191, 320, 1585
BstKTI	GATC	5 cut(s)	576, 1074, 1789, 1951, 2039
BstMAI	GTCTC	9 cut(s)	10, 79, 119, 175, 254, 457, 1555, 1611, 2215
BstMBI	GATC	5 cut(s)	573, 1071, 1786, 1948, 2036
BstMWI	GCNNNNNNNGC	2 cut(s)	553, 1169
BstNI	CCWGG	2 cut(s)	1793, 2105
BstNSI	RCATGY	5 cut(s)	292, 1148, 1598, 1843, 1890
BstSCI	CCNGG	5 cut(s)	354, 932, 1709, 1791, 2103
BstSLI	GKGCMC	1 cut(s)	1874
BstV1I	GCAGC	6 cut(s)	655, 912, 1096, 1475, 1572, 1610
BstV2I	GAAGAC	1 cut(s)	1109
BstX2I	RGATCY	2 cut(s)	1786, 1948
BstYI	RGATCY	2 cut(s)	1786, 1948
BstZ17I	GTATAC	2 cut(s)	459, 1744
BsuI	GTATCC	1 cut(s)	1326
BsuRI	GGCC	7 cut(s)	36, 203, 216, 1008, 1709, 1806, 1883
BtgI	CCRYGG	2 cut(s)	1018, 1556
BtsCI	GGATG	2 cut(s)	1243, 2298
BtsIMutI	CAGTG	3 cut(s)	981, 2216, 2268
BveI	ACCTGC	1 cut(s)	1079
Cac8I	GCNNGC	6 cut(s)	218, 415, 930, 1010, 1804, 1841
CciI	TCATGA	1 cut(s)	1414
CfoI	GCGC	4 cut(s)	162, 191, 320, 1585
Cfr10I	RCCGGY	2 cut(s)	32, 536
Cfr13I	GGNCC	4 cut(s)	103, 202, 352, 941
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	5 cut(s)	781, 858, 1177, 1890, 1968
CviQI	GTAC	5 cut(s)	781, 858, 1177, 1890, 1968
DdeI	CTNAG	7 cut(s)	14, 345, 438, 1281, 1676, 1821, 2219
DinI	GGCGCC	1 cut(s)	319
DpnI	GATC	5 cut(s)	575, 1073, 1788, 1950, 2038
DpnII	GATC	5 cut(s)	573, 1071, 1786, 1948, 2036
DraI	TTTAAA	1 cut(s)	180
EaeI	YGGCCR	2 cut(s)	1804, 1881
Eam1104I	CTCTTC	3 cut(s)	122, 212, 1549
EarI	CTCTTC	3 cut(s)	122, 212, 1549
Eco130I	CCWWGG	3 cut(s)	211, 1018, 1556
Eco24I	GRGCYC	1 cut(s)	1414
Eco31I	GGTCTC	5 cut(s)	10, 79, 175, 254, 2215
Eco32I	GATATC	1 cut(s)	1642
Eco47I	GGWCC	3 cut(s)	103, 352, 941
Eco57I	CTGAAG	1 cut(s)	1103
Eco72I	CACGTG	1 cut(s)	421
EcoNI	CCTNNNNNAGG	1 cut(s)	441
EcoRII	CCWGG	2 cut(s)	1791, 2103
EcoRV	GATATC	1 cut(s)	1642
EcoT14I	CCWWGG	3 cut(s)	211, 1018, 1556
EcoT38I	GRGCYC	1 cut(s)	1414
EgeI	GGCGCC	1 cut(s)	319
EheI	GGCGCC	1 cut(s)	319
ErhI	CCWWGG	3 cut(s)	211, 1018, 1556
Esp3I	CGTCTC	1 cut(s)	119
FaqI	GGGAC	4 cut(s)	580, 954, 2121, 2216
FauI	CCCGC	1 cut(s)	422
FauNDI	CATATG	1 cut(s)	1424
FblI	GTMKAC	2 cut(s)	458, 1743
Fnu4HI	GCNGC	8 cut(s)	304, 644, 926, 1110, 1464, 1586, 1599, 1884
FokI	GGATG	2 cut(s)	1250, 2285
FriOI	GRGCYC	1 cut(s)	1414
Fsp4HI	GCNGC	8 cut(s)	304, 644, 926, 1110, 1464, 1586, 1599, 1884
FspBI	CTAG	3 cut(s)	483, 1326, 1907
FspI	TGCGCA	1 cut(s)	190
GlaI	GCGC	4 cut(s)	161, 190, 319, 1584
GluI	GCNGC	8 cut(s)	304, 644, 926, 1110, 1464, 1586, 1599, 1884
GsaI	CCCAGC	1 cut(s)	384
GsuI	CTGGAG	2 cut(s)	2262, 2292
HaeII	RGCGCY	3 cut(s)	163, 321, 1586
HaeIII	GGCC	7 cut(s)	36, 203, 216, 1008, 1709, 1806, 1883
HapII	CCGG	8 cut(s)	33, 246, 315, 350, 356, 537, 933, 1710
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	4 cut(s)	162, 191, 320, 1585
Hin1I	GRCGYC	1 cut(s)	318
Hin6I	GCGC	4 cut(s)	160, 189, 318, 1583
HinP1I	GCGC	4 cut(s)	160, 189, 318, 1583
HincII	GTYRAC	1 cut(s)	964
HindII	GTYRAC	1 cut(s)	964
HindIII	AAGCTT	1 cut(s)	900
HinfI	GANTC	6 cut(s)	254, 323, 997, 1671, 1903, 2237
HpaII	CCGG	8 cut(s)	33, 246, 315, 350, 356, 537, 933, 1710
HphI	GGTGA	5 cut(s)	22, 410, 691, 1545, 2031
Hpy166II	GTNNAC	3 cut(s)	459, 964, 1744
Hpy188I	TCNGA	5 cut(s)	15, 346, 1446, 1624, 1670
Hpy8I	GTNNAC	3 cut(s)	459, 964, 1744
Hpy99I	CGWCG	2 cut(s)	583, 673
HpyAV	CCTTC	6 cut(s)	47, 676, 998, 1394, 1843, 2086
HpyCH4III	ACNGT	6 cut(s)	278, 571, 785, 1049, 1944, 1972
HpyCH4IV	ACGT	2 cut(s)	420, 581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	553, 1169
HpyF3I	CTNAG	7 cut(s)	14, 345, 438, 1281, 1676, 1821, 2219
HpySE526I	ACGT	2 cut(s)	420, 581
Hsp92I	GRCGYC	1 cut(s)	318
HspAI	GCGC	4 cut(s)	160, 189, 318, 1583
KasI	GGCGCC	1 cut(s)	317
Kzo9I	GATC	5 cut(s)	573, 1071, 1786, 1948, 2036
LmnI	GCTCC	4 cut(s)	311, 1141, 2089, 2283
Lsp1109I	GCAGC	6 cut(s)	655, 912, 1096, 1475, 1572, 1610
LweI	GCATC	9 cut(s)	534, 726, 1143, 1160, 1215, 1331, 1987, 2218, 2302
MaeI	CTAG	3 cut(s)	483, 1326, 1907
MaeII	ACGT	2 cut(s)	420, 581
MaeIII	GTNAC	3 cut(s)	398, 1268, 2214
MalI	GATC	5 cut(s)	575, 1073, 1788, 1950, 2038
MbiI	CCGCTC	1 cut(s)	336
MboI	GATC	5 cut(s)	573, 1071, 1786, 1948, 2036
MboII	GAAGA	9 cut(s)	109, 112, 199, 1109, 1536, 1747, 1826, 2046, 2254
MfeI	CAATTG	2 cut(s)	164, 2185
MflI	RGATCY	2 cut(s)	1786, 1948
MhlI	GDGCHC	3 cut(s)	1414, 1874, 2280
Mly113I	GGCGCC	1 cut(s)	318
MlyI	GAGTC	2 cut(s)	248, 1680
MmeI	TCCRAC	4 cut(s)	282, 1926, 2007, 2296
MseI	TTAA	8 cut(s)	179, 636, 968, 1511, 1725, 1764, 2129, 2231
MslI	CAYNNNNRTG	5 cut(s)	594, 1475, 1593, 1844, 2273
MspI	CCGG	8 cut(s)	33, 246, 315, 350, 356, 537, 933, 1710
MspR9I	CCNGG	5 cut(s)	356, 934, 1711, 1793, 2105
MunI	CAATTG	2 cut(s)	164, 2185
Mva1269I	GAATGC	4 cut(s)	538, 621, 1165, 1567
MvaI	CCWGG	2 cut(s)	1793, 2105
MwoI	GCNNNNNNNGC	2 cut(s)	553, 1169
NarI	GGCGCC	1 cut(s)	318
NciI	CCSGG	3 cut(s)	356, 934, 1711
NcoI	CCATGG	2 cut(s)	1018, 1556
NdeI	CATATG	1 cut(s)	1424
NdeII	GATC	5 cut(s)	573, 1071, 1786, 1948, 2036
NlaIV	GGNNCC	5 cut(s)	307, 319, 354, 942, 1950
NmeAIII	GCCGAG	1 cut(s)	1832
NmuCI	GTSAC	2 cut(s)	398, 2214
NsbI	TGCGCA	1 cut(s)	190
NspI	RCATGY	5 cut(s)	292, 1148, 1598, 1843, 1890
OliI	CACNNNNGTG	1 cut(s)	2273
PaeI	GCATGC	1 cut(s)	1843
PagI	TCATGA	1 cut(s)	1414
PcsI	WCGNNNNNNNCGW	1 cut(s)	857
PctI	GAATGC	4 cut(s)	538, 621, 1165, 1567
PfeI	GAWTC	4 cut(s)	323, 997, 1903, 2237
PflMI	CCANNNNNTGG	3 cut(s)	1318, 1958, 2190
PkrI	GCNGC	8 cut(s)	305, 645, 927, 1111, 1465, 1587, 1600, 1885
PleI	GAGTC	2 cut(s)	248, 1679
PluTI	GGCGCC	1 cut(s)	321
PmaCI	CACGTG	1 cut(s)	421
PmlI	CACGTG	1 cut(s)	421
PpsI	GAGTC	2 cut(s)	248, 1679
Ppu21I	YACGTR	1 cut(s)	421
Psp6I	CCWGG	2 cut(s)	1791, 2103
PspCI	CACGTG	1 cut(s)	421
PspFI	CCCAGC	1 cut(s)	380
PspGI	CCWGG	2 cut(s)	1791, 2103
PspN4I	GGNNCC	5 cut(s)	307, 319, 354, 942, 1950
PspPI	GGNCC	4 cut(s)	103, 202, 352, 941
PsuI	RGATCY	2 cut(s)	1786, 1948
RsaI	GTAC	5 cut(s)	782, 859, 1178, 1891, 1969
RsaNI	GTAC	5 cut(s)	781, 858, 1177, 1890, 1968
RseI	CAYNNNNRTG	5 cut(s)	594, 1475, 1593, 1844, 2273
SaqAI	TTAA	8 cut(s)	179, 636, 968, 1511, 1725, 1764, 2129, 2231
SatI	GCNGC	8 cut(s)	304, 644, 926, 1110, 1464, 1586, 1599, 1884
Sau3AI	GATC	5 cut(s)	573, 1071, 1786, 1948, 2036
Sau96I	GGNCC	4 cut(s)	103, 202, 352, 941
SchI	GAGTC	2 cut(s)	248, 1680
ScrFI	CCNGG	5 cut(s)	356, 934, 1711, 1793, 2105
SduI	GDGCHC	3 cut(s)	1414, 1874, 2280
SfaNI	GCATC	9 cut(s)	534, 726, 1143, 1160, 1215, 1331, 1987, 2218, 2302
SfoI	GGCGCC	1 cut(s)	319
SinI	GGWCC	3 cut(s)	103, 352, 941
SmiMI	CAYNNNNRTG	5 cut(s)	594, 1475, 1593, 1844, 2273
SmlI	CTYRAG	2 cut(s)	239, 892
SmoI	CTYRAG	2 cut(s)	239, 892
SphI	GCATGC	1 cut(s)	1843
SsiI	CCGC	4 cut(s)	303, 334, 415, 1884
SspDI	GGCGCC	1 cut(s)	317
SspI	AATATT	1 cut(s)	1617
SspMI	CTAG	3 cut(s)	483, 1326, 1907
StyD4I	CCNGG	5 cut(s)	354, 932, 1709, 1791, 2103
StyI	CCWWGG	3 cut(s)	211, 1018, 1556
TaaI	ACNGT	6 cut(s)	278, 571, 785, 1049, 1944, 1972
TaiI	ACGT	2 cut(s)	423, 584
TaqI	TCGA	5 cut(s)	150, 252, 578, 668, 822
TaqII	GACCGA	3 cut(s)	148, 958, 2202
TatI	WGTACW	2 cut(s)	1889, 1967
TauI	GCSGC	2 cut(s)	306, 1886
TfiI	GAWTC	4 cut(s)	323, 997, 1903, 2237
Tru1I	TTAA	8 cut(s)	179, 636, 968, 1511, 1725, 1764, 2129, 2231
Tru9I	TTAA	8 cut(s)	179, 636, 968, 1511, 1725, 1764, 2129, 2231
TscAI	CASTG	3 cut(s)	981, 2223, 2275
TseFI	GTSAC	2 cut(s)	398, 2214
TseI	GCWGC	6 cut(s)	643, 925, 1109, 1463, 1585, 1598
Tsp45I	GTSAC	2 cut(s)	398, 2214
TspGWI	ACGGA	2 cut(s)	1605, 2076
TspRI	CASTG	3 cut(s)	981, 2223, 2275
Van91I	CCANNNNNTGG	3 cut(s)	1318, 1958, 2190
VpaK11BI	GGWCC	3 cut(s)	103, 352, 941
XagI	CCTNNNNNAGG	1 cut(s)	441
XapI	RAATTY	6 cut(s)	673, 1078, 1432, 1933, 2059, 2319
XbaI	TCTAGA	2 cut(s)	482, 1906
XceI	RCATGY	5 cut(s)	292, 1148, 1598, 1843, 1890
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1016
XmiI	GTMKAC	2 cut(s)	458, 1743
XspI	CTAG	3 cut(s)	483, 1326, 1907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.