RchiOBHm_Chr4g0418731

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005804
Physical Location & Seq
Forward (+)
44183270 .. 44185752
2483 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38870

Sequence Viewer

Length: 2091 bp
ATGCTCATATCTCTGAGACCCAAATCCATCACCAGCCTTCCACACCTTTCTGCCGCTTCACCTCTCAAATGGGTCTCCACAGCCACCACCCAAAACCCAGAGGACCATCTGCGTCTCTTCTTCAAATCGAGGACGAACCAAACCCACATCGACTACGAGCGCCAATTGGTCTCTGTTCTAAAATCTTGCGCAACCCTTTCGGCCCTCTTGCAAGGCCAGCAACTCCATTCCCTTGTTCTCAAGTCCGGTCTCGACTCCAACACTTTCATCAACAACAGTTTGATTAGCATGTACGCCAAATGCGGCTCCATTTCCTGCGCCGAATCGTTGTTCGGCTCTTGCTCTGAGCCGGACCCGGTTTCCTGTAACATTATGGTTGCTGGGTATGTGAAATCTGGTGACTTGGACAATGCCCGCCAGGTGTTTGATAAAATGCCTGAGAGAGGTTGTGTCTCGTATACTACTATGATAATGGGTCTTTCTAGAAATGGGTTTTGGAGGGAAGCTGTTGCCGTTTTTAGGGATATGAGGAATGCCGGTGTGTTGCCGAATGAGCTGACAATGGGGACTGTGATCTCGACGTTTTCGCATTTGGGTGGGATTTGGAACTGTAGAATGCTTCATGGTTTGGTGGTTAAGTTGCAGCTTGATGGAATGGTGCTTGTTTCGACGAATTTGGTGAAGGTGTATTGTGCTTGTAAGAGTGTGTGGGAAGCGAGAAGTTTGTTTGATGAGATGCCCGAAAGGAATATAGTTTCGTGGAATGTCATGTTAAATGGGTACTCTAAGGCTGGACTCGTGCATTTGGCCAGAGAGTTGTTTGAGAGGATTGATATGAAAGACGTGGTTTCGTGGGGTACAATGATTGATGGGTATGTGCAAGTGGAGTGCTTGAATGAAGCTTTGATGATGTATCGTGCAATGCTGCGTGCCGGGTTGGGACCGAATGATGTTATGCTTGTTGACTTAATTTCAGTGTGTGGGAGGTTGGAGGCGATTCGTGAAGGTCGGCAGTTTCATGGGAGAATTGTCAAGGAGGGTTTTGACTGTTATGATTTCATACAGGCAACGATCATAAATTTTTATGCAGGTTGTGGGGAAATGATTGCTGCTCGTCTTCAGTTTGAAAAGGGCATCAAGGAGCATGTAGCATCTTGGAATGCTCTCATTGCAGGGTACATAAGAAATCAAATGATTGACCAAGCAAGTCTATTGTTTGATGAGATGCCTGAAAGGGATGTTTTTTCATGGAGTTCCATGATTTCTGGTTACACACAGACTGAGCAATCTAAATTGGCTCTGGAACTTTTCCAAAGAATGGTATCTAGTGGGATACAACCAAATGAAATAACAATGGTAAGCGTTTTGTCTGCAATCACTGATTTAGGCACATTGAAAGAAGGAATATGGGCTCATGAATACATATGTGAAAATTCTATTCCTCTGAATGACAATTTGAGTGCAGCTATCATTGATATGTATGCCAAATGTGGGAGTATCAATACTGCCTTAAAGGTGTTCTATCAAATCCAAGACAAAACCTCTTCTGTCTCACCATGGAATGCCATTATATGTGGGTTGGCGCTGCACGGACATGCAGCAATGTCTCTTGAAATATTTTCAGACTTGCAAAGGCGTGATATCAAACTCAATTCAATAACATTCATCGGAGTCCTAAGTGCTTGTTGCCATTCTGGTTTGGTGGAGGCCGGGGAGAGGTATTTTAAGAGCATGAAGAATGTATACCACATTCAACCAAACATCAAGCATTATGGTTGTATGGTGGATCTCCTGGGTAGAGCTGGCCGAGTAGAAGATGCTGAGAAAATGATAAGAAGCATGCCCATGAAGGCTGATGTTGTGATATGGGGCACATTATTGGCCGCATGTACAACACATGGGAATCTAGAAATAGGAGAAATGGCTGAAAAGAATCTGAAACTGTTGGATCCATCTCATGGGGCAAGTACAGTTCTCATGTCCAACCTACTTGCAGATGCAGGGAAGTGGGAGGAAGCCTCTTTGGAAAGGCGAGTAATGCAGAGCCTAAGACTAACGAGATCACCAGGGCACAGTGATGTTGTTTGGTAA

Protein Analysis

696

Amino Acids

77.4

Weight (kDa)

6.33

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 117 - 150 7.5e-07 PPR repeat family
PPR PF01535 120 - 150 2.1e-07 PPR repeat
PPR PF01535 151 - 181 3.2e-08 PPR repeat
PPR_2 PF13041 151 - 196 1.1e-09 PPR repeat family
PPR PF01535 252 - 279 5.1e-06 PPR repeat
PPR_2 PF13041 280 - 318 3.8e-06 PPR repeat family
PPR_2 PF13041 412 - 458 2.5e-09 PPR repeat family
PPR PF01535 415 - 445 1.6e-06 PPR repeat
PPR_2 PF13041 519 - 564 5.2e-06 PPR repeat family
E_motif PF20431 633 - 693 5.7e-08 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 190
Acc36I ACCTGC 1 cut(s) 1079
AccB7I CCANNNNNTGG 2 cut(s) 1318, 1958
AccI GTMKAC 2 cut(s) 458, 1743
AciI CCGC 4 cut(s) 54, 303, 415, 1884
AclWI GGATC 3 cut(s) 1794, 1943, 1956
AcoI YGGCCR 3 cut(s) 807, 1804, 1881
AcsI RAATTY 3 cut(s) 673, 1078, 1432
AcuI CTGAAG 1 cut(s) 1103
AfaI GTAC 6 cut(s) 293, 782, 859, 1178, 1891, 1969
AfiI CCNNNNNNNGG 6 cut(s) 443, 519, 1318, 1491, 1716, 1958
AgsI TTSAA 7 cut(s) 124, 895, 1127, 1396, 1613, 1656, 1754
AjiI CACGTC 1 cut(s) 844
AjnI CCWGG 3 cut(s) 417, 1791, 2065
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AluBI AGCT 6 cut(s) 506, 556, 646, 902, 1466, 1802
AluI AGCT 6 cut(s) 506, 556, 646, 902, 1466, 1802
Alw26I GTCTC 8 cut(s) 10, 79, 119, 175, 254, 457, 1555, 1611
AlwI GGATC 3 cut(s) 1794, 1943, 1956
AoxI GGCC 6 cut(s) 201, 214, 807, 1707, 1804, 1881
ApeKI GCWGC 6 cut(s) 643, 925, 1109, 1463, 1585, 1598
ApoI RAATTY 3 cut(s) 673, 1078, 1432
AspLEI GCGC 4 cut(s) 162, 191, 320, 1585
AspS9I GGNCC 4 cut(s) 103, 202, 352, 941
AsuC2I CCSGG 3 cut(s) 356, 934, 1711
AsuHPI GGTGA 6 cut(s) 22, 51, 410, 691, 1545, 2055
AvaII GGWCC 3 cut(s) 103, 352, 941
BaeGI GKGCMC 2 cut(s) 1874, 2073
BalI TGGCCA 1 cut(s) 809
BamHI GGATCC 1 cut(s) 1948
BanII GRGCYC 1 cut(s) 1414
BarI GAAGNNNNNNTAC 2 cut(s) 1727, 1759
BauI CACGAG 1 cut(s) 797
BbsI GAAGAC 1 cut(s) 1109
BbvI GCAGC 6 cut(s) 655, 912, 1096, 1475, 1572, 1610
BccI CCATC 5 cut(s) 35, 114, 644, 863, 1960
BceAI ACGGC 1 cut(s) 497
BcgI CGANNNNNNTGC 2 cut(s) 180, 214
BciT130I CCWGG 3 cut(s) 419, 1793, 2067
BciVI GTATCC 1 cut(s) 1326
BcnI CCSGG 3 cut(s) 356, 934, 1711
BcoDI GTCTC 8 cut(s) 10, 79, 119, 175, 254, 457, 1555, 1611
BfaI CTAG 3 cut(s) 483, 1326, 1907
BfmI CTRYAG 1 cut(s) 610
BfoI RGCGCY 2 cut(s) 163, 1586
BfuAI ACCTGC 1 cut(s) 1079
BfuI GTATCC 1 cut(s) 1326
BisI GCNGC 9 cut(s) 54, 304, 644, 926, 1110, 1464, 1586, 1599, 1884
BlsI GCNGC 9 cut(s) 55, 305, 645, 927, 1111, 1465, 1587, 1600, 1885
Bme1390I CCNGG 6 cut(s) 356, 419, 934, 1711, 1793, 2067
Bme18I GGWCC 3 cut(s) 103, 352, 941
BmgBI CACGTC 1 cut(s) 844
BmgT120I GGNCC 4 cut(s) 103, 202, 352, 941
BmiI GGNNCC 4 cut(s) 307, 354, 942, 1950
BmrFI CCNGG 6 cut(s) 356, 419, 934, 1711, 1793, 2067
BmsI GCATC 6 cut(s) 726, 1143, 1160, 1215, 1807, 1987
BpiI GAAGAC 1 cut(s) 1109
BplI GAGNNNNNCTC 2 cut(s) 2003, 2035
BpuEI CTTGAG 1 cut(s) 224
BpuMI CCSGG 3 cut(s) 356, 934, 1711
BsaI GGTCTC 4 cut(s) 10, 79, 175, 254
BsaJI CCNNGG 4 cut(s) 1556, 1710, 1792, 2066
BsaWI WCCGGW 1 cut(s) 245
Bsc4I CCNNNNNNNGG 6 cut(s) 443, 519, 1318, 1491, 1716, 1958
Bse118I RCCGGY 1 cut(s) 536
Bse3DI GCAATG 3 cut(s) 927, 1167, 1608
BseBI CCWGG 3 cut(s) 419, 1793, 2067
BseDI CCNNGG 4 cut(s) 1556, 1710, 1792, 2066
BseGI GGATG 1 cut(s) 1243
BseLI CCNNNNNNNGG 6 cut(s) 443, 519, 1318, 1491, 1716, 1958
BseMI GCAATG 3 cut(s) 927, 1167, 1608
BseMII CTCAG 5 cut(s) 5, 336, 429, 1272, 1812
BseSI GKGCMC 2 cut(s) 1874, 2073
BseXI GCAGC 6 cut(s) 655, 912, 1096, 1475, 1572, 1610
BseYI CCCAGC 1 cut(s) 380
BsgI GTGCAG 2 cut(s) 1482, 1571
BshFI GGCC 6 cut(s) 203, 216, 809, 1709, 1806, 1883
BsiSI CCGG 6 cut(s) 246, 350, 356, 537, 933, 1710
BslFI GGGAC 2 cut(s) 580, 954
BslI CCNNNNNNNGG 6 cut(s) 443, 519, 1318, 1491, 1716, 1958
BsmAI GTCTC 8 cut(s) 10, 79, 119, 175, 254, 457, 1555, 1611
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 580, 954
BsmI GAATGC 4 cut(s) 538, 621, 1165, 1567
BsnI GGCC 6 cut(s) 203, 216, 809, 1709, 1806, 1883
Bso31I GGTCTC 4 cut(s) 10, 79, 175, 254
Bsp1286I GDGCHC 3 cut(s) 1414, 1874, 2073
Bsp1407I TGTACA 1 cut(s) 1889
Bsp143I GATC 5 cut(s) 573, 1071, 1786, 1948, 2060
Bsp19I CCATGG 1 cut(s) 1556
BspACI CCGC 4 cut(s) 54, 303, 415, 1884
BspANI GGCC 6 cut(s) 203, 216, 809, 1709, 1806, 1883
BspCNI CTCAG 5 cut(s) 6, 337, 430, 1273, 1813
BspHI TCATGA 1 cut(s) 1414
BspLI GGNNCC 4 cut(s) 307, 354, 942, 1950
BspMI ACCTGC 1 cut(s) 1079
BspPI GGATC 3 cut(s) 1794, 1943, 1956
BspTNI GGTCTC 4 cut(s) 10, 79, 175, 254
BsrDI GCAATG 3 cut(s) 927, 1167, 1608
BsrFI RCCGGY 1 cut(s) 536
BsrGI TGTACA 1 cut(s) 1889
BssAI RCCGGY 1 cut(s) 536
BssECI CCNNGG 4 cut(s) 1556, 1710, 1792, 2066
BssMI GATC 5 cut(s) 573, 1071, 1786, 1948, 2060
BssNAI GTATAC 2 cut(s) 459, 1744
BssSI CACGAG 1 cut(s) 797
BssT1I CCWWGG 1 cut(s) 1556
Bst1107I GTATAC 2 cut(s) 459, 1744
Bst2BI CACGAG 1 cut(s) 797
Bst2UI CCWGG 3 cut(s) 419, 1793, 2067
Bst4CI ACNGT 7 cut(s) 278, 571, 611, 1049, 1944, 1972, 2075
Bst6I CTCTTC 2 cut(s) 122, 1549
BstAUI TGTACA 1 cut(s) 1889
BstC8I GCNNGC 5 cut(s) 218, 415, 930, 1804, 1841
BstDEI CTNAG 8 cut(s) 14, 345, 438, 786, 1281, 1676, 1821, 2048
BstDSI CCRYGG 1 cut(s) 1556
BstENI CCTNNNNNAGG 1 cut(s) 441
BstF5I GGATG 1 cut(s) 1243
BstH2I RGCGCY 2 cut(s) 163, 1586
BstHHI GCGC 4 cut(s) 162, 191, 320, 1585
BstKTI GATC 5 cut(s) 576, 1074, 1789, 1951, 2063
BstMAI GTCTC 8 cut(s) 10, 79, 119, 175, 254, 457, 1555, 1611
BstMBI GATC 5 cut(s) 573, 1071, 1786, 1948, 2060
BstMWI GCNNNNNNNGC 4 cut(s) 217, 553, 1169, 2038
BstNI CCWGG 3 cut(s) 419, 1793, 2067
BstNSI RCATGY 5 cut(s) 292, 1148, 1598, 1843, 1890
BstSCI CCNGG 6 cut(s) 354, 417, 932, 1709, 1791, 2065
BstSFI CTRYAG 1 cut(s) 610
BstSLI GKGCMC 2 cut(s) 1874, 2073
BstV1I GCAGC 6 cut(s) 655, 912, 1096, 1475, 1572, 1610
BstV2I GAAGAC 1 cut(s) 1109
BstX2I RGATCY 2 cut(s) 1786, 1948
BstYI RGATCY 2 cut(s) 1786, 1948
BstZ17I GTATAC 2 cut(s) 459, 1744
BsuI GTATCC 1 cut(s) 1326
BsuRI GGCC 6 cut(s) 203, 216, 809, 1709, 1806, 1883
BtgI CCRYGG 1 cut(s) 1556
BtrI CACGTC 1 cut(s) 844
BtsCI GGATG 1 cut(s) 1243
BtsIMutI CAGTG 3 cut(s) 981, 1377, 2080
BveI ACCTGC 1 cut(s) 1079
Cac8I GCNNGC 5 cut(s) 218, 415, 930, 1804, 1841
CciI TCATGA 1 cut(s) 1414
CfoI GCGC 4 cut(s) 162, 191, 320, 1585
Cfr10I RCCGGY 1 cut(s) 536
Cfr13I GGNCC 4 cut(s) 103, 202, 352, 941
CseI GACGC 1 cut(s) 101
Csp6I GTAC 6 cut(s) 292, 781, 858, 1177, 1890, 1968
CviQI GTAC 6 cut(s) 292, 781, 858, 1177, 1890, 1968
DdeI CTNAG 8 cut(s) 14, 345, 438, 786, 1281, 1676, 1821, 2048
DpnI GATC 5 cut(s) 575, 1073, 1788, 1950, 2062
DpnII GATC 5 cut(s) 573, 1071, 1786, 1948, 2060
EaeI YGGCCR 3 cut(s) 807, 1804, 1881
Eam1104I CTCTTC 2 cut(s) 122, 1549
EarI CTCTTC 2 cut(s) 122, 1549
Eco130I CCWWGG 1 cut(s) 1556
Eco24I GRGCYC 1 cut(s) 1414
Eco31I GGTCTC 4 cut(s) 10, 79, 175, 254
Eco32I GATATC 1 cut(s) 1642
Eco47I GGWCC 3 cut(s) 103, 352, 941
Eco57I CTGAAG 1 cut(s) 1103
EcoNI CCTNNNNNAGG 1 cut(s) 441
EcoRII CCWGG 3 cut(s) 417, 1791, 2065
EcoRV GATATC 1 cut(s) 1642
EcoT14I CCWWGG 1 cut(s) 1556
EcoT38I GRGCYC 1 cut(s) 1414
ErhI CCWWGG 1 cut(s) 1556
Esp3I CGTCTC 1 cut(s) 119
FaqI GGGAC 2 cut(s) 580, 954
FauI CCCGC 1 cut(s) 422
FauNDI CATATG 1 cut(s) 1424
FblI GTMKAC 2 cut(s) 458, 1743
Fnu4HI GCNGC 9 cut(s) 54, 304, 644, 926, 1110, 1464, 1586, 1599, 1884
FokI GGATG 1 cut(s) 1250
FriOI GRGCYC 1 cut(s) 1414
Fsp4HI GCNGC 9 cut(s) 54, 304, 644, 926, 1110, 1464, 1586, 1599, 1884
FspBI CTAG 3 cut(s) 483, 1326, 1907
FspI TGCGCA 1 cut(s) 190
GlaI GCGC 4 cut(s) 161, 190, 319, 1584
GluI GCNGC 9 cut(s) 54, 304, 644, 926, 1110, 1464, 1586, 1599, 1884
GsaI CCCAGC 1 cut(s) 384
HaeII RGCGCY 2 cut(s) 163, 1586
HaeIII GGCC 6 cut(s) 203, 216, 809, 1709, 1806, 1883
HapII CCGG 6 cut(s) 246, 350, 356, 537, 933, 1710
HgaI GACGC 1 cut(s) 101
HhaI GCGC 4 cut(s) 162, 191, 320, 1585
Hin6I GCGC 4 cut(s) 160, 189, 318, 1583
HinP1I GCGC 4 cut(s) 160, 189, 318, 1583
HincII GTYRAC 1 cut(s) 964
HindII GTYRAC 1 cut(s) 964
HindIII AAGCTT 1 cut(s) 900
HinfI GANTC 7 cut(s) 254, 323, 795, 997, 1671, 1903, 1933
HpaII CCGG 6 cut(s) 246, 350, 356, 537, 933, 1710
HphI GGTGA 6 cut(s) 22, 51, 410, 691, 1545, 2055
Hpy166II GTNNAC 3 cut(s) 459, 964, 1744
Hpy188I TCNGA 6 cut(s) 15, 346, 1446, 1624, 1670, 1938
Hpy188III TCNNGA 8 cut(s) 251, 483, 577, 1001, 1301, 1415, 1610, 1907
Hpy8I GTNNAC 3 cut(s) 459, 964, 1744
Hpy99I CGWCG 2 cut(s) 583, 673
HpyAV CCTTC 5 cut(s) 47, 676, 998, 1394, 1843
HpyCH4III ACNGT 7 cut(s) 278, 571, 611, 1049, 1944, 1972, 2075
HpyCH4IV ACGT 2 cut(s) 581, 843
HpyF10VI GCNNNNNNNGC 4 cut(s) 217, 553, 1169, 2038
HpyF3I CTNAG 8 cut(s) 14, 345, 438, 786, 1281, 1676, 1821, 2048
HpySE526I ACGT 2 cut(s) 581, 843
HspAI GCGC 4 cut(s) 160, 189, 318, 1583
Kzo9I GATC 5 cut(s) 573, 1071, 1786, 1948, 2060
LmnI GCTCC 2 cut(s) 311, 1141
Lsp1109I GCAGC 6 cut(s) 655, 912, 1096, 1475, 1572, 1610
LweI GCATC 6 cut(s) 726, 1143, 1160, 1215, 1807, 1987
MaeI CTAG 3 cut(s) 483, 1326, 1907
MaeII ACGT 2 cut(s) 581, 843
MaeIII GTNAC 3 cut(s) 365, 398, 1268
MalI GATC 5 cut(s) 575, 1073, 1788, 1950, 2062
MboI GATC 5 cut(s) 573, 1071, 1786, 1948, 2060
MboII GAAGA 6 cut(s) 109, 112, 1109, 1536, 1747, 1826
MfeI CAATTG 1 cut(s) 164
MflI RGATCY 2 cut(s) 1786, 1948
MhlI GDGCHC 3 cut(s) 1414, 1874, 2073
MlsI TGGCCA 1 cut(s) 809
MluCI AATT 9 cut(s) 164, 673, 969, 1026, 1078, 1292, 1432, 1453, 1651
MluNI TGGCCA 1 cut(s) 809
MlyI GAGTC 3 cut(s) 248, 789, 1680
MmeI TCCRAC 4 cut(s) 282, 969, 1926, 2007
Mox20I TGGCCA 1 cut(s) 809
MscI TGGCCA 1 cut(s) 809
MseI TTAA 5 cut(s) 636, 773, 968, 1511, 1725
MslI CAYNNNNRTG 5 cut(s) 594, 1475, 1593, 1844, 2076
Msp20I TGGCCA 1 cut(s) 809
MspI CCGG 6 cut(s) 246, 350, 356, 537, 933, 1710
MspR9I CCNGG 6 cut(s) 356, 419, 934, 1711, 1793, 2067
MunI CAATTG 1 cut(s) 164
Mva1269I GAATGC 4 cut(s) 538, 621, 1165, 1567
MvaI CCWGG 3 cut(s) 419, 1793, 2067
MwoI GCNNNNNNNGC 4 cut(s) 217, 553, 1169, 2038
NciI CCSGG 3 cut(s) 356, 934, 1711
NcoI CCATGG 1 cut(s) 1556
NdeI CATATG 1 cut(s) 1424
NdeII GATC 5 cut(s) 573, 1071, 1786, 1948, 2060
NlaIV GGNNCC 4 cut(s) 307, 354, 942, 1950
NmeAIII GCCGAG 1 cut(s) 1832
NmuCI GTSAC 1 cut(s) 398
NsbI TGCGCA 1 cut(s) 190
NspI RCATGY 5 cut(s) 292, 1148, 1598, 1843, 1890
PaeI GCATGC 1 cut(s) 1843
PagI TCATGA 1 cut(s) 1414
PctI GAATGC 4 cut(s) 538, 621, 1165, 1567
PfeI GAWTC 4 cut(s) 323, 997, 1903, 1933
PflMI CCANNNNNTGG 2 cut(s) 1318, 1958
PkrI GCNGC 9 cut(s) 55, 305, 645, 927, 1111, 1465, 1587, 1600, 1885
PleI GAGTC 3 cut(s) 248, 789, 1679
PpsI GAGTC 3 cut(s) 248, 789, 1679
Psp6I CCWGG 3 cut(s) 417, 1791, 2065
PspFI CCCAGC 1 cut(s) 380
PspGI CCWGG 3 cut(s) 417, 1791, 2065
PspN4I GGNNCC 4 cut(s) 307, 354, 942, 1950
PspPI GGNCC 4 cut(s) 103, 202, 352, 941
PsuI RGATCY 2 cut(s) 1786, 1948
RsaI GTAC 6 cut(s) 293, 782, 859, 1178, 1891, 1969
RsaNI GTAC 6 cut(s) 292, 781, 858, 1177, 1890, 1968
RseI CAYNNNNRTG 5 cut(s) 594, 1475, 1593, 1844, 2076
SaqAI TTAA 5 cut(s) 636, 773, 968, 1511, 1725
SatI GCNGC 9 cut(s) 54, 304, 644, 926, 1110, 1464, 1586, 1599, 1884
Sau3AI GATC 5 cut(s) 573, 1071, 1786, 1948, 2060
Sau96I GGNCC 4 cut(s) 103, 202, 352, 941
SchI GAGTC 3 cut(s) 248, 789, 1680
ScrFI CCNGG 6 cut(s) 356, 419, 934, 1711, 1793, 2067
SduI GDGCHC 3 cut(s) 1414, 1874, 2073
SfaNI GCATC 6 cut(s) 726, 1143, 1160, 1215, 1807, 1987
SfcI CTRYAG 1 cut(s) 610
SinI GGWCC 3 cut(s) 103, 352, 941
SmiMI CAYNNNNRTG 5 cut(s) 594, 1475, 1593, 1844, 2076
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SphI GCATGC 1 cut(s) 1843
Sse9I AATT 9 cut(s) 164, 673, 969, 1026, 1078, 1292, 1432, 1453, 1651
SsiI CCGC 4 cut(s) 54, 303, 415, 1884
SspI AATATT 1 cut(s) 1617
SspMI CTAG 3 cut(s) 483, 1326, 1907
StyD4I CCNGG 6 cut(s) 354, 417, 932, 1709, 1791, 2065
StyI CCWWGG 1 cut(s) 1556
TaaI ACNGT 7 cut(s) 278, 571, 611, 1049, 1944, 1972, 2075
TaiI ACGT 2 cut(s) 584, 846
TaqI TCGA 5 cut(s) 128, 150, 252, 578, 668
TaqII GACCGA 1 cut(s) 958
TasI AATT 9 cut(s) 164, 673, 969, 1026, 1078, 1292, 1432, 1453, 1651
TatI WGTACW 2 cut(s) 1889, 1967
TauI GCSGC 3 cut(s) 56, 306, 1886
TfiI GAWTC 4 cut(s) 323, 997, 1903, 1933
Tru1I TTAA 5 cut(s) 636, 773, 968, 1511, 1725
Tru9I TTAA 5 cut(s) 636, 773, 968, 1511, 1725
TscAI CASTG 3 cut(s) 981, 1384, 2080
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 6 cut(s) 643, 925, 1109, 1463, 1585, 1598
Tsp45I GTSAC 1 cut(s) 398
TspGWI ACGGA 1 cut(s) 1605
TspRI CASTG 3 cut(s) 981, 1384, 2080
Van91I CCANNNNNTGG 2 cut(s) 1318, 1958
VpaK11BI GGWCC 3 cut(s) 103, 352, 941
XagI CCTNNNNNAGG 1 cut(s) 441
XapI RAATTY 3 cut(s) 673, 1078, 1432
XbaI TCTAGA 2 cut(s) 482, 1906
XceI RCATGY 5 cut(s) 292, 1148, 1598, 1843, 1890
XmiI GTMKAC 2 cut(s) 458, 1743
XspI CTAG 3 cut(s) 483, 1326, 1907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.