Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005804

Physical Location & Seq

Genomic Coordinates Forward (+)

44302875 .. 44305087

Gene Structure 2213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38877

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGATTGACCAAGCAAGTCTATTGTTTGACGAGATGCCTGAAAGGGATGTTTTTTCATGGAGTTCCATGATTTCGGGTTACACACAGACTGAGCAATCTAAATTGGCTCTGGAACTTTTCCAAAGAATGGCATCTAGTGGGATACAACCAAATGAAATAACAATGGTAAGCGTTTTGTCTGCAATCGCTGATTTAGGCACATTGAAAGAAGGAATATGGGCTCATGAATACATATGTGAAAATTCTATTCCTCTGAATGACAATTTGAGTGCAGCTATCATTGATATGTATGCCAAATGTGGGAGTATCAATACTGCCTTAAAGGTGTTCTATCAAATCCAAGACAAAACCTCTTCTGTCTCACCATGGAATGCCATTATATGTGGGTTGGCGCTGCACGGACATGCAGCAATGTCTCTTGAAATATTTTCAGACTTGCAAAGGCGTGATATCAAACTCAATTCAATAACATTCATCGGAGTCCTAAGTGCTTGTTGCCATTCTGGTTTGGTGGAGGCTGGGGAGAGGTATTTTAAGAGCATGAAGAATGTATACCACATTCAACCAAACATTAAGCATTATGGTTGTATGGTGGATCTCCTGGGTAGAGCTGGCCGAGTAGAAGATGCTGAGAAAATGATAAGAAGCATGCCCATGAAGGCTGATGTTGTGATATGGGGCACATTATTGGCCGCATGTACAACACATGGGAATCTAGAAATAGGAGAAATGGCTGAAAAGAATTTGAAACTGTTGGATCCATCTCATGGGGCAAGTACAGTTCTCATGTCCAACCTACTTGCAGATGCAGGGAAGTGGGAGGAAGCCTCTTTGGAAAGGCGAGTAATGCAGAGCCTAAGACTGACGAGATCACCAGGGCACAGTGATGTTGTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

299

Amino Acids

33.07

Weight (kDa)

5.6

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	15 - 62	1.2e-09	PPR repeat family
PPR	PF01535	18 - 48	2.4e-06	PPR repeat
PPR_2	PF13041	122 - 167	1.6e-06	PPR repeat family
PPR_3	PF13812	142 - 201	4.3e-06	Pentatricopeptide repeat domain
E_motif	PF20431	236 - 296	1.6e-08	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19020
fragaria_vesca	FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290
malus_domestica	MD13G1182300.v1.1 MD16G1182700.v1.1
prunus_persica	Prupe.1G150200_v2.0.a1
pyrus_communis	pycom13g15730
rosa_chinensis	RchiOBHm_Chr4g0418731 RchiOBHm_Chr4g0418821
rosa_laevigata	RLG00000007842
rosa_multiflora	Rmu_sc0000935.1_g000016 Rmu_sc0000935.1_g000030 Rmu_sc0006705.1_g000009 Rmu_sc0020345.1_g000005
rosa_roxburghii	Rroxscaffold_5G00361940 Rroxscaffold_5G00362000
rosa_rugosa	Rorug04G0154800 Rorug04G0154800
rosa_samantha	Rh4BG214200 Rh4CG228300 Rh4CG228600 Rh4DG215500
rosa_wichuraiana	Rw4G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	127, 767
AccI	GTMKAC	1 cut(s)	552
AciI	CCGC	1 cut(s)	693
AclWI	GGATC	3 cut(s)	603, 752, 765
AcoI	YGGCCR	2 cut(s)	613, 690
AcsI	RAATTY	2 cut(s)	241, 742
AfaI	GTAC	2 cut(s)	700, 778
AfiI	CCNNNNNNNGG	3 cut(s)	127, 300, 767
AgsI	TTSAA	5 cut(s)	205, 422, 465, 563, 748
AjnI	CCWGG	2 cut(s)	600, 874
AluBI	AGCT	2 cut(s)	275, 611
AluI	AGCT	2 cut(s)	275, 611
Alw26I	GTCTC	2 cut(s)	364, 420
AlwI	GGATC	3 cut(s)	603, 752, 765
AoxI	GGCC	2 cut(s)	613, 690
ApeKI	GCWGC	3 cut(s)	272, 394, 407
ApoI	RAATTY	2 cut(s)	241, 742
AspLEI	GCGC	1 cut(s)	394
AsuHPI	GGTGA	2 cut(s)	354, 864
BaeGI	GKGCMC	2 cut(s)	683, 882
BamHI	GGATCC	1 cut(s)	757
BanII	GRGCYC	1 cut(s)	223
BarI	GAAGNNNNNNTAC	2 cut(s)	536, 568
BbvI	GCAGC	3 cut(s)	284, 381, 419
BccI	CCATC	1 cut(s)	769
BciT130I	CCWGG	2 cut(s)	602, 876
BciVI	GTATCC	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	364, 420
BfaI	CTAG	2 cut(s)	135, 716
BfoI	RGCGCY	1 cut(s)	395
BfuI	GTATCC	1 cut(s)	135
BisI	GCNGC	4 cut(s)	273, 395, 408, 693
BlsI	GCNGC	4 cut(s)	274, 396, 409, 694
Bme1390I	CCNGG	2 cut(s)	602, 876
BmiI	GGNNCC	1 cut(s)	759
BmrFI	CCNGG	2 cut(s)	602, 876
BmsI	GCATC	4 cut(s)	24, 140, 616, 796
BplI	GAGNNNNNCTC	2 cut(s)	812, 844
BsaJI	CCNNGG	3 cut(s)	365, 601, 875
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 300, 767
Bse3DI	GCAATG	1 cut(s)	417
BseBI	CCWGG	2 cut(s)	602, 876
BseDI	CCNNGG	3 cut(s)	365, 601, 875
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	3 cut(s)	127, 300, 767
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	2 cut(s)	81, 621
BseSI	GKGCMC	2 cut(s)	683, 882
BseXI	GCAGC	3 cut(s)	284, 381, 419
BseYI	CCCAGC	1 cut(s)	518
BsgI	GTGCAG	2 cut(s)	291, 380
BshFI	GGCC	2 cut(s)	615, 692
BslI	CCNNNNNNNGG	3 cut(s)	127, 300, 767
BsmAI	GTCTC	2 cut(s)	364, 420
BsmI	GAATGC	1 cut(s)	376
BsnI	GGCC	2 cut(s)	615, 692
Bsp1286I	GDGCHC	3 cut(s)	223, 683, 882
Bsp1407I	TGTACA	1 cut(s)	698
Bsp143I	GATC	3 cut(s)	595, 757, 869
Bsp19I	CCATGG	1 cut(s)	365
BspACI	CCGC	1 cut(s)	693
BspANI	GGCC	2 cut(s)	615, 692
BspCNI	CTCAG	2 cut(s)	82, 622
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	759
BspPI	GGATC	3 cut(s)	603, 752, 765
BsrDI	GCAATG	1 cut(s)	417
BsrGI	TGTACA	1 cut(s)	698
BssECI	CCNNGG	3 cut(s)	365, 601, 875
BssMI	GATC	3 cut(s)	595, 757, 869
BssNAI	GTATAC	1 cut(s)	553
BssT1I	CCWWGG	1 cut(s)	365
Bst1107I	GTATAC	1 cut(s)	553
Bst2UI	CCWGG	2 cut(s)	602, 876
Bst4CI	ACNGT	3 cut(s)	753, 781, 884
Bst6I	CTCTTC	1 cut(s)	358
BstAUI	TGTACA	1 cut(s)	698
BstC8I	GCNNGC	2 cut(s)	613, 650
BstDEI	CTNAG	4 cut(s)	90, 485, 630, 857
BstDSI	CCRYGG	1 cut(s)	365
BstF5I	GGATG	1 cut(s)	52
BstH2I	RGCGCY	1 cut(s)	395
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	3 cut(s)	598, 760, 872
BstMAI	GTCTC	2 cut(s)	364, 420
BstMBI	GATC	3 cut(s)	595, 757, 869
BstMWI	GCNNNNNNNGC	1 cut(s)	847
BstNI	CCWGG	2 cut(s)	602, 876
BstNSI	RCATGY	3 cut(s)	407, 652, 699
BstSCI	CCNGG	2 cut(s)	600, 874
BstSLI	GKGCMC	2 cut(s)	683, 882
BstV1I	GCAGC	3 cut(s)	284, 381, 419
BstX2I	RGATCY	2 cut(s)	595, 757
BstYI	RGATCY	2 cut(s)	595, 757
BstZ17I	GTATAC	1 cut(s)	553
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	615, 692
BtgI	CCRYGG	1 cut(s)	365
BtsCI	GGATG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	889
Cac8I	GCNNGC	2 cut(s)	613, 650
CciI	TCATGA	1 cut(s)	223
CfoI	GCGC	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	699, 777
CviQI	GTAC	2 cut(s)	699, 777
DdeI	CTNAG	4 cut(s)	90, 485, 630, 857
DpnI	GATC	3 cut(s)	597, 759, 871
DpnII	GATC	3 cut(s)	595, 757, 869
EaeI	YGGCCR	2 cut(s)	613, 690
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	223
Eco32I	GATATC	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	600, 874
EcoRV	GATATC	1 cut(s)	451
EcoT14I	CCWWGG	1 cut(s)	365
EcoT38I	GRGCYC	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	365
FauNDI	CATATG	1 cut(s)	233
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	4 cut(s)	273, 395, 408, 693
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	4 cut(s)	273, 395, 408, 693
FspBI	CTAG	2 cut(s)	135, 716
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	4 cut(s)	273, 395, 408, 693
GsaI	CCCAGC	1 cut(s)	522
HaeII	RGCGCY	1 cut(s)	395
HaeIII	GGCC	2 cut(s)	615, 692
HhaI	GCGC	1 cut(s)	394
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HinfI	GANTC	2 cut(s)	480, 712
HphI	GGTGA	2 cut(s)	354, 864
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	3 cut(s)	255, 433, 479
Hpy188III	TCNNGA	4 cut(s)	110, 224, 419, 716
Hpy8I	GTNNAC	1 cut(s)	553
HpyAV	CCTTC	2 cut(s)	203, 652
HpyCH4III	ACNGT	3 cut(s)	753, 781, 884
HpyCH4V	TGCA	8 cut(s)	182, 272, 397, 407, 439, 803, 809, 850
HpyF10VI	GCNNNNNNNGC	1 cut(s)	847
HpyF3I	CTNAG	4 cut(s)	90, 485, 630, 857
HspAI	GCGC	1 cut(s)	392
Kzo9I	GATC	3 cut(s)	595, 757, 869
Lsp1109I	GCAGC	3 cut(s)	284, 381, 419
LweI	GCATC	4 cut(s)	24, 140, 616, 796
MaeI	CTAG	2 cut(s)	135, 716
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	3 cut(s)	597, 759, 871
MboI	GATC	3 cut(s)	595, 757, 869
MboII	GAAGA	3 cut(s)	345, 556, 635
MflI	RGATCY	2 cut(s)	595, 757
MhlI	GDGCHC	3 cut(s)	223, 683, 882
MluCI	AATT	5 cut(s)	101, 241, 262, 460, 742
MlyI	GAGTC	1 cut(s)	489
MmeI	TCCRAC	2 cut(s)	735, 816
MnlI	CCTC	6 cut(s)	261, 361, 508, 519, 814, 838
MseI	TTAA	3 cut(s)	320, 534, 573
MslI	CAYNNNNRTG	4 cut(s)	284, 402, 653, 885
MspR9I	CCNGG	2 cut(s)	602, 876
Mva1269I	GAATGC	1 cut(s)	376
MvaI	CCWGG	2 cut(s)	602, 876
MwoI	GCNNNNNNNGC	1 cut(s)	847
NcoI	CCATGG	1 cut(s)	365
NdeI	CATATG	1 cut(s)	233
NdeII	GATC	3 cut(s)	595, 757, 869
NlaIV	GGNNCC	1 cut(s)	759
NmeAIII	GCCGAG	1 cut(s)	641
NspI	RCATGY	3 cut(s)	407, 652, 699
PaeI	GCATGC	1 cut(s)	652
PagI	TCATGA	1 cut(s)	223
PctI	GAATGC	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	712
PflMI	CCANNNNNTGG	2 cut(s)	127, 767
PkrI	GCNGC	4 cut(s)	274, 396, 409, 694
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
Psp6I	CCWGG	2 cut(s)	600, 874
PspFI	CCCAGC	1 cut(s)	518
PspGI	CCWGG	2 cut(s)	600, 874
PspN4I	GGNNCC	1 cut(s)	759
PsuI	RGATCY	2 cut(s)	595, 757
RsaI	GTAC	2 cut(s)	700, 778
RsaNI	GTAC	2 cut(s)	699, 777
RseI	CAYNNNNRTG	4 cut(s)	284, 402, 653, 885
SaqAI	TTAA	3 cut(s)	320, 534, 573
SatI	GCNGC	4 cut(s)	273, 395, 408, 693
Sau3AI	GATC	3 cut(s)	595, 757, 869
SchI	GAGTC	1 cut(s)	489
ScrFI	CCNGG	2 cut(s)	602, 876
SduI	GDGCHC	3 cut(s)	223, 683, 882
SetI	ASST	6 cut(s)	277, 327, 353, 530, 613, 798
SfaNI	GCATC	4 cut(s)	24, 140, 616, 796
SmiMI	CAYNNNNRTG	4 cut(s)	284, 402, 653, 885
SphI	GCATGC	1 cut(s)	652
Sse9I	AATT	5 cut(s)	101, 241, 262, 460, 742
SsiI	CCGC	1 cut(s)	693
SspI	AATATT	1 cut(s)	426
SspMI	CTAG	2 cut(s)	135, 716
StyD4I	CCNGG	2 cut(s)	600, 874
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	3 cut(s)	753, 781, 884
TasI	AATT	5 cut(s)	101, 241, 262, 460, 742
TatI	WGTACW	2 cut(s)	698, 776
TauI	GCSGC	1 cut(s)	695
TfiI	GAWTC	1 cut(s)	712
Tru1I	TTAA	3 cut(s)	320, 534, 573
Tru9I	TTAA	3 cut(s)	320, 534, 573
TscAI	CASTG	1 cut(s)	889
TseI	GCWGC	3 cut(s)	272, 394, 407
TspDTI	ATGAA	6 cut(s)	45, 168, 240, 463, 557, 671
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	1 cut(s)	889
Van91I	CCANNNNNTGG	2 cut(s)	127, 767
XapI	RAATTY	2 cut(s)	241, 742
XbaI	TCTAGA	1 cut(s)	715
XceI	RCATGY	3 cut(s)	407, 652, 699
XmiI	GTMKAC	1 cut(s)	552
XspI	CTAG	2 cut(s)	135, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.