Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000935.1

Orthogroup ID

OG0005804

Physical Location & Seq

Genomic Coordinates Forward (+)

151182 .. 151802

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000935.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgccaaatgtgggagcgtatatcgatactgccttaaaggtgttctatcaaatccaagacaaagcctcttctgtctcaccatggaatgccattatatgtggcttggcgctgcacggacatgcagcaatgtctcttgaaatattttcagacttgcaaaggcgtgatatcaaactcaattcaataacattcatcggagtcctaagtgcttgttgccattctggtttggtggaggccggagagaggtattttaagagcatgaagaatgtatatcacattcaaccaaacatcaagcattatggttgtatggtggatctcctgggtagagctggccgagtagaagatgctgagaaaatgataagaagcatgcccatgaaggcagatgttgtgacatggggcacattattggccgcatgtacaacacatgggaatctagaaataggagaaatggctgaaaagaatctgaaactgttggatccatctcatggggcaagtacagttctcatgtccaacctacttgcagatgcagggaaatgggaagaagcctctttggagaggcgagtaatgcagagcctacgactaacgagatcaccagggcacagtgatgttatttggcaagggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

206

Amino Acids

22.7

Weight (kDa)

7.08

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19020
fragaria_vesca	FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290
malus_domestica	MD13G1182300.v1.1 MD16G1182700.v1.1
prunus_persica	Prupe.1G150200_v2.0.a1
pyrus_communis	pycom13g15730
rosa_chinensis	RchiOBHm_Chr4g0418731 RchiOBHm_Chr4g0418821
rosa_laevigata	RLG00000007842
rosa_multiflora	Rmu_sc0000935.1_g000016 Rmu_sc0000935.1_g000030 Rmu_sc0006705.1_g000009 Rmu_sc0020345.1_g000005
rosa_roxburghii	Rroxscaffold_5G00361940 Rroxscaffold_5G00362000
rosa_rugosa	Rorug04G0154800 Rorug04G0154800
rosa_samantha	Rh4BG214200 Rh4CG228300 Rh4CG228600 Rh4DG215500
rosa_wichuraiana	Rw4G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	482
AciI	CCGC	1 cut(s)	408
AclWI	GGATC	3 cut(s)	318, 467, 480
AcoI	YGGCCR	2 cut(s)	328, 405
AfaI	GTAC	2 cut(s)	415, 493
AfiI	CCNNNNNNNGG	3 cut(s)	11, 240, 482
AgsI	TTSAA	3 cut(s)	137, 180, 278
AjnI	CCWGG	2 cut(s)	315, 589
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
Alw26I	GTCTC	2 cut(s)	79, 135
AlwI	GGATC	3 cut(s)	318, 467, 480
AoxI	GGCC	3 cut(s)	231, 328, 405
ApeKI	GCWGC	2 cut(s)	109, 122
AspLEI	GCGC	1 cut(s)	109
AsuHPI	GGTGA	2 cut(s)	69, 579
BaeGI	GKGCMC	2 cut(s)	398, 597
BamHI	GGATCC	1 cut(s)	472
BbvI	GCAGC	2 cut(s)	96, 134
BccI	CCATC	1 cut(s)	484
BciT130I	CCWGG	2 cut(s)	317, 591
BcoDI	GTCTC	2 cut(s)	79, 135
BfaI	CTAG	1 cut(s)	431
BfoI	RGCGCY	1 cut(s)	110
BisI	GCNGC	3 cut(s)	110, 123, 408
BlsI	GCNGC	3 cut(s)	111, 124, 409
Bme1390I	CCNGG	2 cut(s)	317, 591
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	2 cut(s)	317, 591
BmsI	GCATC	2 cut(s)	331, 511
Bsa29I	ATCGAT	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	80, 316, 590
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 240, 482
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	2 cut(s)	317, 591
BseCI	ATCGAT	1 cut(s)	24
BseDI	CCNNGG	3 cut(s)	80, 316, 590
BseLI	CCNNNNNNNGG	3 cut(s)	11, 240, 482
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	336
BseSI	GKGCMC	2 cut(s)	398, 597
BseXI	GCAGC	2 cut(s)	96, 134
BsgI	GTGCAG	1 cut(s)	95
BshFI	GGCC	3 cut(s)	233, 330, 407
BshVI	ATCGAT	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	3 cut(s)	11, 240, 482
BsmAI	GTCTC	2 cut(s)	79, 135
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	3 cut(s)	233, 330, 407
Bsp1286I	GDGCHC	2 cut(s)	398, 597
Bsp1407I	TGTACA	1 cut(s)	413
Bsp143I	GATC	3 cut(s)	310, 472, 584
Bsp19I	CCATGG	1 cut(s)	80
BspACI	CCGC	1 cut(s)	408
BspANI	GGCC	3 cut(s)	233, 330, 407
BspCNI	CTCAG	1 cut(s)	337
BspDI	ATCGAT	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	474
BspPI	GGATC	3 cut(s)	318, 467, 480
BsrDI	GCAATG	1 cut(s)	132
BsrGI	TGTACA	1 cut(s)	413
BssECI	CCNNGG	3 cut(s)	80, 316, 590
BssMI	GATC	3 cut(s)	310, 472, 584
BssT1I	CCWWGG	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	317, 591
Bst4CI	ACNGT	3 cut(s)	468, 496, 599
Bst6I	CTCTTC	1 cut(s)	73
BstAUI	TGTACA	1 cut(s)	413
BstC8I	GCNNGC	2 cut(s)	328, 365
BstDEI	CTNAG	2 cut(s)	200, 345
BstDSI	CCRYGG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	3 cut(s)	313, 475, 587
BstMAI	GTCTC	2 cut(s)	79, 135
BstMBI	GATC	3 cut(s)	310, 472, 584
BstMWI	GCNNNNNNNGC	1 cut(s)	562
BstNI	CCWGG	2 cut(s)	317, 591
BstNSI	RCATGY	3 cut(s)	122, 367, 414
BstSCI	CCNGG	2 cut(s)	315, 589
BstSLI	GKGCMC	2 cut(s)	398, 597
BstV1I	GCAGC	2 cut(s)	96, 134
BstX2I	RGATCY	2 cut(s)	310, 472
BstYI	RGATCY	2 cut(s)	310, 472
Bsu15I	ATCGAT	1 cut(s)	24
BsuRI	GGCC	3 cut(s)	233, 330, 407
BsuTUI	ATCGAT	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	604
Cac8I	GCNNGC	2 cut(s)	328, 365
CfoI	GCGC	1 cut(s)	109
ClaI	ATCGAT	1 cut(s)	24
Csp6I	GTAC	2 cut(s)	414, 492
CviJI	RGCY	9 cut(s)	65, 102, 233, 326, 330, 407, 449, 542, 570
CviKI_1	RGCY	9 cut(s)	65, 102, 233, 326, 330, 407, 449, 542, 570
CviQI	GTAC	2 cut(s)	414, 492
DdeI	CTNAG	2 cut(s)	200, 345
DpnI	GATC	3 cut(s)	312, 474, 586
DpnII	GATC	3 cut(s)	310, 472, 584
EaeI	YGGCCR	2 cut(s)	328, 405
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	80
Eco32I	GATATC	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	315, 589
EcoRV	GATATC	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	80
Fnu4HI	GCNGC	3 cut(s)	110, 123, 408
Fsp4HI	GCNGC	3 cut(s)	110, 123, 408
FspBI	CTAG	1 cut(s)	431
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	3 cut(s)	110, 123, 408
HaeII	RGCGCY	1 cut(s)	110
HaeIII	GGCC	3 cut(s)	233, 330, 407
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HinfI	GANTC	3 cut(s)	195, 427, 457
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	2 cut(s)	69, 579
Hpy188I	TCNGA	3 cut(s)	148, 194, 462
Hpy188III	TCNNGA	2 cut(s)	134, 431
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	3 cut(s)	468, 496, 599
HpyCH4V	TGCA	6 cut(s)	112, 122, 154, 518, 524, 565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	562
HpyF3I	CTNAG	2 cut(s)	200, 345
HspAI	GCGC	1 cut(s)	107
Kzo9I	GATC	3 cut(s)	310, 472, 584
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	8 cut(s)	204, 247, 302, 312, 329, 510, 576, 603
Lsp1109I	GCAGC	2 cut(s)	96, 134
LweI	GCATC	2 cut(s)	331, 511
MaeI	CTAG	1 cut(s)	431
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	3 cut(s)	312, 474, 586
MboI	GATC	3 cut(s)	310, 472, 584
MboII	GAAGA	4 cut(s)	60, 271, 350, 548
MflI	RGATCY	2 cut(s)	310, 472
MhlI	GDGCHC	2 cut(s)	398, 597
MluCI	AATT	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	204
MmeI	TCCRAC	2 cut(s)	450, 531
MnlI	CCTC	5 cut(s)	76, 223, 234, 546, 553
MseI	TTAA	2 cut(s)	35, 249
MslI	CAYNNNNRTG	3 cut(s)	117, 368, 600
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	2 cut(s)	317, 591
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	2 cut(s)	317, 591
MwoI	GCNNNNNNNGC	1 cut(s)	562
NcoI	CCATGG	1 cut(s)	80
NdeII	GATC	3 cut(s)	310, 472, 584
NlaIV	GGNNCC	1 cut(s)	474
NmeAIII	GCCGAG	1 cut(s)	356
NmuCI	GTSAC	1 cut(s)	385
NspI	RCATGY	3 cut(s)	122, 367, 414
PaeI	GCATGC	1 cut(s)	367
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	2 cut(s)	427, 457
PflMI	CCANNNNNTGG	1 cut(s)	482
PkrI	GCNGC	3 cut(s)	111, 124, 409
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
Psp6I	CCWGG	2 cut(s)	315, 589
PspGI	CCWGG	2 cut(s)	315, 589
PspN4I	GGNNCC	1 cut(s)	474
PsuI	RGATCY	2 cut(s)	310, 472
RsaI	GTAC	2 cut(s)	415, 493
RsaNI	GTAC	2 cut(s)	414, 492
RseI	CAYNNNNRTG	3 cut(s)	117, 368, 600
SaqAI	TTAA	2 cut(s)	35, 249
SatI	GCNGC	3 cut(s)	110, 123, 408
Sau3AI	GATC	3 cut(s)	310, 472, 584
SchI	GAGTC	1 cut(s)	204
ScrFI	CCNGG	2 cut(s)	317, 591
SduI	GDGCHC	2 cut(s)	398, 597
SetI	ASST	4 cut(s)	42, 245, 328, 513
SfaNI	GCATC	2 cut(s)	331, 511
SmiMI	CAYNNNNRTG	3 cut(s)	117, 368, 600
SphI	GCATGC	1 cut(s)	367
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	1 cut(s)	408
SspI	AATATT	1 cut(s)	141
SspMI	CTAG	1 cut(s)	431
StyD4I	CCNGG	2 cut(s)	315, 589
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	3 cut(s)	468, 496, 599
TaqI	TCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	175
TatI	WGTACW	2 cut(s)	413, 491
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	2 cut(s)	427, 457
Tru1I	TTAA	2 cut(s)	35, 249
Tru9I	TTAA	2 cut(s)	35, 249
TscAI	CASTG	1 cut(s)	604
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	2 cut(s)	109, 122
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	3 cut(s)	178, 272, 386
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	604
Van91I	CCANNNNNTGG	1 cut(s)	482
XbaI	TCTAGA	1 cut(s)	430
XceI	RCATGY	3 cut(s)	122, 367, 414
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.