Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005804

Physical Location & Seq

Genomic Coordinates Forward (+)

42818968 .. 42823981

Gene Structure 5014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00362000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGGGACTGTGATCTCGACGTTTTCGCATTTGGGTGGGATTTGGAATTGTAGAATGCTTCATGGTTTGGTGGTTAAGTTGCAGCTTGATGGAATGGTGCTTGTTTCGACGAATTTGGTGAAGGTGTATTGTGCTTGTAAGAGTGTGTGGGAAGCGAGAAGTTTGTTTGATGAGATGCCCGAAAGGAATATAGTTTCGTTCATTGCAGGATACATAAGAAATCAAATGATTGACCAAGCAAGTCTATTGTTTGATGAGATGCCTGAAAGGGATGTTTTTTCATGGAGTTCCATGATTTCTGGCTACACGCAGACTGAGCAATCTGAATTGGCTCTGGAACTTTTCCTAAGAATGGTATCTAGTGGGATACAACCAAATGAAATAACAATGGTAAGCGTTTTGTCTGCAATTGCTGATTTAGTCACATTGAAAGAAGGAATATGGGCTCATGAATACATATGTGAAAATTCTATCCCTCTGAATGACAACTTGAGTGCAGCTATCATTGATATGTATGCCAAATGTGGGAGTATCAATACTGCCTTAAAGCTGTTCTATCAAATCCAAGACAAAACCTCTTCTGTCTCACCATGGAATGCCATTATATGTGGGTTGGCGCTGCATGGACATGCAGCAATGTCTCTTGACATATTTTCGGACTTGCAAAGGTGTGATATCAAACTCAATTCAATAACATTCATCGGAGTCCTAAGTGCTTGTTGCCATTCTGGTTTGGTGGAGGCCGGAGAGAGGTATTTTAAGAGCATGAAGAATGTATACCACATTCAACCAAACATTAAGCATTATGGTTGTATGGTGGATCTCCTGGGTAGAGCTGGCCGAGTAGAAGATGCTGAGAAAATGATAAGAAGCATGCCCATGAAGGCTGATGTTGTGATATGGGGCACATTATTGGCCGCATGTACAACACATGGGAATCTAGAAATAGGAGAAATGGCTGAAAAGAATTTGAAACTGTTGGATCCATCTCATGGGGCAAGTACCGTTCTCATGTTCAACCTACTTGCAGATGCAGGGAAGTGGGAGGAAGCCTCTTTCGAAAGGCGAGTAATGCAGAGCCTAAGACTAATGAGATCACCGGGGCACAGTGATGTTGTTTGTTATAGTATCAGCTATATGAATGAGAAGTATCCACCTAAAGTGGAAGCCATGCAATCAAAATATGCACTGAGGACAGCCAACGTCTGTGTTGAAGCTATGAGAGACCTCCATAAACTAGCGCAGATTCATGGGGTTCAAGTTCTAGAGGAACCAAGTACCTTGAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

430

Amino Acids

47.9

Weight (kDa)

5.82

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	90 - 137	2.2e-09	PPR repeat family
PPR	PF01535	93 - 123	9.9e-07	PPR repeat
E_motif	PF20431	311 - 371	4.7e-06	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19020
fragaria_vesca	FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290
malus_domestica	MD13G1182300.v1.1 MD16G1182700.v1.1
prunus_persica	Prupe.1G150200_v2.0.a1
pyrus_communis	pycom13g15730
rosa_chinensis	RchiOBHm_Chr4g0418731 RchiOBHm_Chr4g0418821
rosa_laevigata	RLG00000007842
rosa_multiflora	Rmu_sc0000935.1_g000016 Rmu_sc0000935.1_g000030 Rmu_sc0006705.1_g000009 Rmu_sc0020345.1_g000005
rosa_roxburghii	Rroxscaffold_5G00361940 Rroxscaffold_5G00362000
rosa_rugosa	Rorug04G0154800 Rorug04G0154800
rosa_samantha	Rh4BG214200 Rh4CG228300 Rh4CG228600 Rh4DG215500
rosa_wichuraiana	Rw4G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	992
AccI	GTMKAC	1 cut(s)	777
AciI	CCGC	1 cut(s)	918
AclWI	GGATC	3 cut(s)	828, 977, 990
AcoI	YGGCCR	2 cut(s)	838, 915
AcsI	RAATTY	3 cut(s)	112, 466, 967
AfaI	GTAC	3 cut(s)	925, 1003, 1279
AfiI	CCNNNNNNNGG	4 cut(s)	352, 525, 750, 992
AgsI	TTSAA	7 cut(s)	430, 690, 788, 973, 1018, 1214, 1259
AjnI	CCWGG	1 cut(s)	825
AluBI	AGCT	6 cut(s)	85, 500, 550, 836, 1134, 1217
AluI	AGCT	6 cut(s)	85, 500, 550, 836, 1134, 1217
Alw26I	GTCTC	3 cut(s)	589, 645, 1218
AlwI	GGATC	3 cut(s)	828, 977, 990
AoxI	GGCC	3 cut(s)	741, 838, 915
ApeKI	GCWGC	4 cut(s)	82, 497, 619, 632
ApoI	RAATTY	3 cut(s)	112, 466, 967
AspLEI	GCGC	2 cut(s)	619, 1243
AsuC2I	CCSGG	1 cut(s)	1101
AsuHPI	GGTGA	3 cut(s)	130, 579, 1089
AsuII	TTCGAA	1 cut(s)	1059
BaeGI	GKGCMC	2 cut(s)	908, 1107
BamHI	GGATCC	1 cut(s)	982
BanII	GRGCYC	1 cut(s)	448
BarI	GAAGNNNNNNTAC	2 cut(s)	761, 793
BbvI	GCAGC	4 cut(s)	94, 509, 606, 644
BccI	CCATC	2 cut(s)	83, 994
BciT130I	CCWGG	1 cut(s)	827
BciVI	GTATCC	3 cut(s)	203, 360, 1161
BcnI	CCSGG	1 cut(s)	1101
BcoDI	GTCTC	3 cut(s)	589, 645, 1218
BfaI	CTAG	4 cut(s)	360, 941, 1238, 1265
BfoI	RGCGCY	1 cut(s)	620
BfuI	GTATCC	3 cut(s)	203, 360, 1161
BisI	GCNGC	5 cut(s)	83, 498, 620, 633, 918
BlsI	GCNGC	5 cut(s)	84, 499, 621, 634, 919
Bme1390I	CCNGG	2 cut(s)	827, 1101
BmiI	GGNNCC	2 cut(s)	984, 1272
BmrFI	CCNGG	2 cut(s)	827, 1101
BmsI	GCATC	4 cut(s)	165, 249, 841, 1021
BplI	GAGNNNNNCTC	2 cut(s)	1037, 1069
Bpu14I	TTCGAA	1 cut(s)	1059
BpuEI	CTTGAG	1 cut(s)	511
BpuMI	CCSGG	1 cut(s)	1101
BsaI	GGTCTC	1 cut(s)	1218
BsaJI	CCNNGG	3 cut(s)	590, 826, 1100
Bsc4I	CCNNNNNNNGG	4 cut(s)	352, 525, 750, 992
Bse3DI	GCAATG	2 cut(s)	201, 642
BseBI	CCWGG	1 cut(s)	827
BseDI	CCNNGG	3 cut(s)	590, 826, 1100
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	4 cut(s)	352, 525, 750, 992
BseMI	GCAATG	2 cut(s)	201, 642
BseMII	CTCAG	3 cut(s)	306, 846, 1181
BseSI	GKGCMC	2 cut(s)	908, 1107
BseXI	GCAGC	4 cut(s)	94, 509, 606, 644
BsgI	GTGCAG	1 cut(s)	516
BshFI	GGCC	3 cut(s)	743, 840, 917
BsiSI	CCGG	2 cut(s)	744, 1100
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	4 cut(s)	352, 525, 750, 992
BsmAI	GTCTC	3 cut(s)	589, 645, 1218
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	2 cut(s)	60, 601
BsnI	GGCC	3 cut(s)	743, 840, 917
Bso31I	GGTCTC	1 cut(s)	1218
Bsp119I	TTCGAA	1 cut(s)	1059
Bsp1286I	GDGCHC	3 cut(s)	448, 908, 1107
Bsp1407I	TGTACA	1 cut(s)	923
Bsp143I	GATC	4 cut(s)	12, 820, 982, 1094
Bsp19I	CCATGG	1 cut(s)	590
BspACI	CCGC	1 cut(s)	918
BspANI	GGCC	3 cut(s)	743, 840, 917
BspCNI	CTCAG	3 cut(s)	307, 847, 1182
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	984, 1272
BspPI	GGATC	3 cut(s)	828, 977, 990
BspT104I	TTCGAA	1 cut(s)	1059
BspTNI	GGTCTC	1 cut(s)	1218
BsrDI	GCAATG	2 cut(s)	201, 642
BsrGI	TGTACA	1 cut(s)	923
BssECI	CCNNGG	3 cut(s)	590, 826, 1100
BssMI	GATC	4 cut(s)	12, 820, 982, 1094
BssNAI	GTATAC	1 cut(s)	778
BssT1I	CCWWGG	1 cut(s)	590
Bst1107I	GTATAC	1 cut(s)	778
Bst2UI	CCWGG	1 cut(s)	827
Bst4CI	ACNGT	4 cut(s)	10, 978, 1006, 1109
Bst6I	CTCTTC	1 cut(s)	583
BstAUI	TGTACA	1 cut(s)	923
BstBI	TTCGAA	1 cut(s)	1059
BstC8I	GCNNGC	2 cut(s)	838, 875
BstDEI	CTNAG	6 cut(s)	315, 347, 710, 855, 1082, 1190
BstDSI	CCRYGG	1 cut(s)	590
BstF5I	GGATG	1 cut(s)	277
BstH2I	RGCGCY	1 cut(s)	620
BstHHI	GCGC	2 cut(s)	619, 1243
BstKTI	GATC	4 cut(s)	15, 823, 985, 1097
BstMAI	GTCTC	3 cut(s)	589, 645, 1218
BstMBI	GATC	4 cut(s)	12, 820, 982, 1094
BstMWI	GCNNNNNNNGC	2 cut(s)	316, 1072
BstNI	CCWGG	1 cut(s)	827
BstNSI	RCATGY	3 cut(s)	632, 877, 924
BstSCI	CCNGG	2 cut(s)	825, 1099
BstSLI	GKGCMC	2 cut(s)	908, 1107
BstV1I	GCAGC	4 cut(s)	94, 509, 606, 644
BstX2I	RGATCY	2 cut(s)	820, 982
BstYI	RGATCY	2 cut(s)	820, 982
BstZ17I	GTATAC	1 cut(s)	778
BsuI	GTATCC	3 cut(s)	203, 360, 1161
BsuRI	GGCC	3 cut(s)	743, 840, 917
BtgI	CCRYGG	1 cut(s)	590
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	2 cut(s)	1114, 1187
Cac8I	GCNNGC	2 cut(s)	838, 875
CciI	TCATGA	1 cut(s)	448
CfoI	GCGC	2 cut(s)	619, 1243
Csp6I	GTAC	3 cut(s)	924, 1002, 1278
CviQI	GTAC	3 cut(s)	924, 1002, 1278
DdeI	CTNAG	6 cut(s)	315, 347, 710, 855, 1082, 1190
DpnI	GATC	4 cut(s)	14, 822, 984, 1096
DpnII	GATC	4 cut(s)	12, 820, 982, 1094
EaeI	YGGCCR	2 cut(s)	838, 915
Eam1104I	CTCTTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	583
Eco130I	CCWWGG	1 cut(s)	590
Eco24I	GRGCYC	1 cut(s)	448
Eco31I	GGTCTC	1 cut(s)	1218
Eco32I	GATATC	1 cut(s)	676
EcoRII	CCWGG	1 cut(s)	825
EcoRV	GATATC	1 cut(s)	676
EcoT14I	CCWWGG	1 cut(s)	590
EcoT38I	GRGCYC	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	590
FaqI	GGGAC	1 cut(s)	19
FauNDI	CATATG	1 cut(s)	458
FblI	GTMKAC	1 cut(s)	777
Fnu4HI	GCNGC	5 cut(s)	83, 498, 620, 633, 918
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	5 cut(s)	83, 498, 620, 633, 918
FspBI	CTAG	4 cut(s)	360, 941, 1238, 1265
GlaI	GCGC	2 cut(s)	618, 1242
GluI	GCNGC	5 cut(s)	83, 498, 620, 633, 918
HaeII	RGCGCY	1 cut(s)	620
HaeIII	GGCC	3 cut(s)	743, 840, 917
HapII	CCGG	2 cut(s)	744, 1100
HhaI	GCGC	2 cut(s)	619, 1243
Hin6I	GCGC	2 cut(s)	617, 1241
HinP1I	GCGC	2 cut(s)	617, 1241
HinfI	GANTC	3 cut(s)	705, 937, 1246
HpaII	CCGG	2 cut(s)	744, 1100
HphI	GGTGA	3 cut(s)	130, 579, 1089
Hpy166II	GTNNAC	1 cut(s)	778
Hpy188I	TCNGA	4 cut(s)	325, 480, 658, 704
Hpy188III	TCNNGA	6 cut(s)	16, 335, 449, 644, 941, 1265
Hpy8I	GTNNAC	1 cut(s)	778
Hpy99I	CGWCG	2 cut(s)	22, 112
HpyAV	CCTTC	3 cut(s)	115, 428, 877
HpyCH4III	ACNGT	4 cut(s)	10, 978, 1006, 1109
HpyCH4IV	ACGT	2 cut(s)	20, 1203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	316, 1072
HpyF3I	CTNAG	6 cut(s)	315, 347, 710, 855, 1082, 1190
HpySE526I	ACGT	2 cut(s)	20, 1203
HspAI	GCGC	2 cut(s)	617, 1241
Kzo9I	GATC	4 cut(s)	12, 820, 982, 1094
Lsp1109I	GCAGC	4 cut(s)	94, 509, 606, 644
LweI	GCATC	4 cut(s)	165, 249, 841, 1021
MaeI	CTAG	4 cut(s)	360, 941, 1238, 1265
MaeII	ACGT	2 cut(s)	20, 1203
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	4 cut(s)	14, 822, 984, 1096
MboI	GATC	4 cut(s)	12, 820, 982, 1094
MboII	GAAGA	3 cut(s)	570, 781, 860
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	2 cut(s)	820, 982
MhlI	GDGCHC	3 cut(s)	448, 908, 1107
MluCI	AATT	7 cut(s)	46, 112, 326, 408, 466, 685, 967
MlyI	GAGTC	1 cut(s)	714
MmeI	TCCRAC	1 cut(s)	960
MnlI	CCTC	9 cut(s)	486, 586, 733, 744, 1039, 1063, 1185, 1238, 1261
MseI	TTAA	4 cut(s)	75, 545, 759, 798
MslI	CAYNNNNRTG	5 cut(s)	33, 509, 627, 878, 1110
MspI	CCGG	2 cut(s)	744, 1100
MspR9I	CCNGG	2 cut(s)	827, 1101
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	2 cut(s)	60, 601
MvaI	CCWGG	1 cut(s)	827
MwoI	GCNNNNNNNGC	2 cut(s)	316, 1072
NciI	CCSGG	1 cut(s)	1101
NcoI	CCATGG	1 cut(s)	590
NdeI	CATATG	1 cut(s)	458
NdeII	GATC	4 cut(s)	12, 820, 982, 1094
NlaIV	GGNNCC	2 cut(s)	984, 1272
NmeAIII	GCCGAG	1 cut(s)	866
NmuCI	GTSAC	1 cut(s)	421
NspI	RCATGY	3 cut(s)	632, 877, 924
NspV	TTCGAA	1 cut(s)	1059
PaeI	GCATGC	1 cut(s)	877
PagI	TCATGA	1 cut(s)	448
PctI	GAATGC	2 cut(s)	60, 601
PfeI	GAWTC	2 cut(s)	937, 1246
PflMI	CCANNNNNTGG	1 cut(s)	992
PkrI	GCNGC	5 cut(s)	84, 499, 621, 634, 919
PleI	GAGTC	1 cut(s)	713
PpsI	GAGTC	1 cut(s)	713
Psp6I	CCWGG	1 cut(s)	825
PspGI	CCWGG	1 cut(s)	825
PspN4I	GGNNCC	2 cut(s)	984, 1272
PsuI	RGATCY	2 cut(s)	820, 982
RsaI	GTAC	3 cut(s)	925, 1003, 1279
RsaNI	GTAC	3 cut(s)	924, 1002, 1278
RseI	CAYNNNNRTG	5 cut(s)	33, 509, 627, 878, 1110
SaqAI	TTAA	4 cut(s)	75, 545, 759, 798
SatI	GCNGC	5 cut(s)	83, 498, 620, 633, 918
Sau3AI	GATC	4 cut(s)	12, 820, 982, 1094
SchI	GAGTC	1 cut(s)	714
ScrFI	CCNGG	2 cut(s)	827, 1101
SduI	GDGCHC	3 cut(s)	448, 908, 1107
SfaNI	GCATC	4 cut(s)	165, 249, 841, 1021
SfuI	TTCGAA	1 cut(s)	1059
SmiMI	CAYNNNNRTG	5 cut(s)	33, 509, 627, 878, 1110
SmlI	CTYRAG	2 cut(s)	490, 1282
SmoI	CTYRAG	2 cut(s)	490, 1282
SphI	GCATGC	1 cut(s)	877
Sse9I	AATT	7 cut(s)	46, 112, 326, 408, 466, 685, 967
SsiI	CCGC	1 cut(s)	918
SspMI	CTAG	4 cut(s)	360, 941, 1238, 1265
StyD4I	CCNGG	2 cut(s)	825, 1099
StyI	CCWWGG	1 cut(s)	590
TaaI	ACNGT	4 cut(s)	10, 978, 1006, 1109
TaiI	ACGT	2 cut(s)	23, 1206
TaqI	TCGA	3 cut(s)	17, 107, 1059
TasI	AATT	7 cut(s)	46, 112, 326, 408, 466, 685, 967
TatI	WGTACW	1 cut(s)	923
TauI	GCSGC	1 cut(s)	920
TfiI	GAWTC	2 cut(s)	937, 1246
Tru1I	TTAA	4 cut(s)	75, 545, 759, 798
Tru9I	TTAA	4 cut(s)	75, 545, 759, 798
TscAI	CASTG	2 cut(s)	1114, 1194
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	4 cut(s)	82, 497, 619, 632
Tsp45I	GTSAC	1 cut(s)	421
TspRI	CASTG	2 cut(s)	1114, 1194
Van91I	CCANNNNNTGG	1 cut(s)	992
XapI	RAATTY	3 cut(s)	112, 466, 967
XbaI	TCTAGA	2 cut(s)	940, 1264
XceI	RCATGY	3 cut(s)	632, 877, 924
XmiI	GTMKAC	1 cut(s)	777
XspI	CTAG	4 cut(s)	360, 941, 1238, 1265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.