Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005804

Physical Location & Seq

Genomic Coordinates Reverse (-)

37231754 .. 37235295

Gene Structure 3542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG214200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

ATGCTCATATCTCTGAGACCCAAATCCCTCACCGGCCTTCCACACGTTTCTGCTGCTTCACCTCTCAAATGGGTCTCCACAGCCACCACCCAAAACCCAGAGGACCATCTGCGTCTCTTCTTCAAATCCAGAACGAACCAAACCCACATCGACTACGAGCGCCAATTGGTCTCTCTTCTAAAATCTTGCGCAACCCTTTCGGCCCTATTCCAAGGCCAGCAACTTCATTCCCTTGTTCTCAAGTCCGGTCTTGACTCCAACACTTTCATCAACAACAGTTTGATTAGCACGTATGCCAAATGCGGCTCCATTTCCGGCGCCGAATCGTTGTTCCGCTCTTGTTCTGAGCTGGACCCGGTTTCCTGTAATATCATGGTTGCAGGGTATGTGAAATCTGGTGACTTGGACAATGCACGCCAGGTGTTTGATAAAATGCCTGTGAGAGGTTGTGTCTCGTACACTACTATGATAATGGGTCTTTCTAGAAATGGGTTTTGGAGGGAAGCTGTTGAGGTTTTTAGGGATATGAGGAATGCCGGTGTGATGCCGAATGAGCTGACAATGGGGACTGTGATCTCGACGTTTTCGCATTTGGGTGGGATTTGGAATTGTCGGATGCTTCATGGTTTGGTGGTTAAGTTGCTGCTTGATGGAATGGTGCTTGTTTCGACGAATTTGGTGAAGGTGTATTGTGCTTGTAAGAGTGTGCGGGAGGCGAGAAGTTTGTTTGATGAGATGCCCGAAAGGAATATAGTTTCGTGGAATGTCATGTTAAATGGGTACTCTAAGGCTGGACTCGTGCATTTGGCCAGAGAGTTGTTTGAGAGGATTGATATGAAAGACGTGGTTTCGTGGGGTACAATGATTGATGGGTATGTGCAAGTGGAGTGCTTGAATGAAGCTTTGATGACGTATCGTGCAATGCTGCGTGCCGGGTTGGGACCGAATGATGTTATGCTTGTTGACCTAATTTCAATGTGTGGGAGGTTGGAGGCGATTCATGAAGGTCAGCAGTTTCATGGGAGAATTGTCAAGGAGGGTTTTGACTGTTATGATTTCATACAGGCAACGATCATAAATTTTTATGCAGGTTGTGGCGAAATGATTGCTGCGCGTCTTCAGTTTGAAAAGGGCATCAAGGAGCATGTAGCATCTTGGAATGCTCTCATTGCAGGATATATAAGAAATCAAATGATTGACCAAGCAAGTCTATTGTTTGATGAGATGCCTGAAAGGGATGTTTTTTCATGGAGTTCCATGATTTCTGGTTACACGCAGACTGAGCAATCTGAATTGGCTCTGGAACTTTTCCGAAGAATGGTATCTAGTGGGATACAACCAAATGAAATAACAATGGTAAGCGTTTTGTCTGCAATTGCTGATTTAGGCACATTGAAAGAAGGAATATGGGCTCATAAATACATATGTGAAAATTCTATTCCTCTGAATGACAATTTGAGTGCAGCTATCATTGATATGTATGCCAAATGTGGGAGTATTAATACTGCCTTAAAGCTGTTCTATCAAATCCAAGACAAAACCTCTTCTGTCTCACCATGGAACGCCATTATATGTGGGTTGGCGCTGCACGGACATGCAGCAATGTCTCTTGAAATATTTTCGGACTTGCAAAGGCGTGATATCAAACTCAATTCAATAACATTCATCGGAGTCCTAAGTGCTTGCTGCCATTCTGGTTTGGTGGAGGCCGGGGAGAGGTATTTTAAGAGCATGAAGAATGTTTACCACATTCAACCAAACATTAAGCATTATGGTTGTATGGTGGATCTCCTGGGTAGAGCTGGCCGGGTAGAAGATGCTGAGAAAATTATAAGAAGCATGCCCATGAAGGCTGATGTTGTGATATGGGGCACGTTATTGGCTGCATGTACAACACATGGGAATCTAGAAATAGGAGAAATGGCTGAAAAGAATTTGAAACTGTTGGATCCATCTCATGGGGCAAGTACAATTCTCATGTCCAACCTACTTGCAGATGCAGGGAAGTGGGAGGAAGCCTCTTTGGAAAGGCAAGTAATGCAGAGCCTGAGACTAACGAGATCACCAGGGCACAGTGATGTTGTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

696

Amino Acids

77.38

Weight (kDa)

6.36

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	120 - 150	1.3e-06	PPR repeat
PPR_1	PF12854	150 - 177	7.1e-06	PPR repeat
PPR	PF01535	151 - 181	6.9e-09	PPR repeat
PPR_2	PF13041	151 - 196	4.9e-10	PPR repeat family
PPR	PF01535	252 - 279	5.1e-06	PPR repeat
PPR_2	PF13041	412 - 459	9e-10	PPR repeat family
PPR	PF01535	415 - 445	4.7e-07	PPR repeat
PPR_2	PF13041	519 - 564	5.2e-06	PPR repeat family
E_motif	PF20431	633 - 693	3.8e-08	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19020
fragaria_vesca	FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290 FvH4_4g14290
malus_domestica	MD13G1182300.v1.1 MD16G1182700.v1.1
prunus_persica	Prupe.1G150200_v2.0.a1
pyrus_communis	pycom13g15730
rosa_chinensis	RchiOBHm_Chr4g0418731 RchiOBHm_Chr4g0418821
rosa_laevigata	RLG00000007842
rosa_multiflora	Rmu_sc0000935.1_g000016 Rmu_sc0000935.1_g000030 Rmu_sc0006705.1_g000009 Rmu_sc0020345.1_g000005
rosa_roxburghii	Rroxscaffold_5G00361940 Rroxscaffold_5G00362000
rosa_rugosa	Rorug04G0154800 Rorug04G0154800
rosa_samantha	Rh4BG214200 Rh4CG228300 Rh4CG228600 Rh4DG215500
rosa_wichuraiana	Rw4G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1832
Acc16I	TGCGCA	1 cut(s)	190
Acc36I	ACCTGC	1 cut(s)	1079
AccB1I	GGYRCC	1 cut(s)	317
AccB7I	CCANNNNNTGG	1 cut(s)	1958
AccBSI	CCGCTC	1 cut(s)	336
AccII	CGCG	1 cut(s)	1114
AciI	CCGC	3 cut(s)	303, 334, 709
AclWI	GGATC	3 cut(s)	1794, 1943, 1956
AcoI	YGGCCR	2 cut(s)	807, 1804
AcsI	RAATTY	4 cut(s)	673, 1078, 1432, 1933
AcuI	CTGAAG	1 cut(s)	1103
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	5 cut(s)	458, 782, 859, 1891, 1969
AfiI	CCNNNNNNNGG	5 cut(s)	443, 1318, 1491, 1716, 1958
AflIII	ACRYGT	1 cut(s)	43
AgsI	TTSAA	9 cut(s)	124, 895, 975, 1127, 1396, 1613, 1656, 1754, 1939
AjiI	CACGTC	1 cut(s)	844
AjnI	CCWGG	3 cut(s)	417, 1791, 2065
AjuI	GAANNNNNNNTTGG	2 cut(s)	478, 510
AluBI	AGCT	7 cut(s)	349, 506, 556, 902, 1466, 1516, 1802
AluI	AGCT	7 cut(s)	349, 506, 556, 902, 1466, 1516, 1802
Alw26I	GTCTC	8 cut(s)	10, 79, 119, 175, 457, 1555, 1611, 2044
AlwI	GGATC	3 cut(s)	1794, 1943, 1956
AlwNI	CAGNNNCTG	1 cut(s)	2047
AoxI	GGCC	6 cut(s)	34, 201, 214, 807, 1707, 1804
ApeKI	GCWGC	9 cut(s)	53, 643, 925, 1109, 1463, 1585, 1598, 1686, 1883
ApoI	RAATTY	4 cut(s)	673, 1078, 1432, 1933
AseI	ATTAAT	1 cut(s)	1500
AspLEI	GCGC	5 cut(s)	162, 191, 320, 1114, 1585
AspS9I	GGNCC	4 cut(s)	103, 202, 352, 941
AsuC2I	CCSGG	4 cut(s)	356, 934, 1711, 1808
AsuHPI	GGTGA	6 cut(s)	22, 51, 410, 691, 1545, 2055
AvaII	GGWCC	3 cut(s)	103, 352, 941
BaeGI	GKGCMC	2 cut(s)	1874, 2073
BalI	TGGCCA	1 cut(s)	809
BamHI	GGATCC	1 cut(s)	1948
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	1414
BarI	GAAGNNNNNNTAC	2 cut(s)	1727, 1759
BauI	CACGAG	1 cut(s)	797
BbsI	GAAGAC	1 cut(s)	1109
BbvI	GCAGC	9 cut(s)	40, 630, 912, 1096, 1475, 1572, 1610, 1673, 1870
BccI	CCATC	4 cut(s)	114, 644, 863, 1960
BcgI	CGANNNNNNTGC	4 cut(s)	180, 214, 1088, 1122
BciT130I	CCWGG	3 cut(s)	419, 1793, 2067
BciVI	GTATCC	1 cut(s)	1326
BcnI	CCSGG	4 cut(s)	356, 934, 1711, 1808
BcoDI	GTCTC	8 cut(s)	10, 79, 119, 175, 457, 1555, 1611, 2044
BfaI	CTAG	3 cut(s)	483, 1326, 1907
BfoI	RGCGCY	3 cut(s)	163, 321, 1586
BfuAI	ACCTGC	1 cut(s)	1079
BfuI	GTATCC	1 cut(s)	1326
Bme1390I	CCNGG	7 cut(s)	356, 419, 934, 1711, 1793, 1808, 2067
Bme18I	GGWCC	3 cut(s)	103, 352, 941
BmgBI	CACGTC	1 cut(s)	844
BmgT120I	GGNCC	4 cut(s)	103, 202, 352, 941
BmiI	GGNNCC	5 cut(s)	307, 319, 354, 942, 1950
BmrFI	CCNGG	7 cut(s)	356, 419, 934, 1711, 1793, 1808, 2067
BmsI	GCATC	8 cut(s)	534, 606, 726, 1143, 1160, 1215, 1807, 1987
BpiI	GAAGAC	1 cut(s)	1109
BplI	GAGNNNNNCTC	2 cut(s)	2003, 2035
BpuEI	CTTGAG	1 cut(s)	224
BpuMI	CCSGG	4 cut(s)	356, 934, 1711, 1808
BsaAI	YACGTR	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	318
BsaI	GGTCTC	3 cut(s)	10, 79, 175
BsaJI	CCNNGG	5 cut(s)	211, 1556, 1710, 1792, 2066
BsaWI	WCCGGW	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	5 cut(s)	443, 1318, 1491, 1716, 1958
Bse118I	RCCGGY	2 cut(s)	32, 536
Bse3DI	GCAATG	3 cut(s)	927, 1167, 1608
BseBI	CCWGG	3 cut(s)	419, 1793, 2067
BseDI	CCNNGG	5 cut(s)	211, 1556, 1710, 1792, 2066
BseGI	GGATG	2 cut(s)	621, 1243
BseLI	CCNNNNNNNGG	5 cut(s)	443, 1318, 1491, 1716, 1958
BseMI	GCAATG	3 cut(s)	927, 1167, 1608
BseMII	CTCAG	5 cut(s)	5, 336, 1272, 1812, 2039
BseSI	GKGCMC	2 cut(s)	1874, 2073
BseXI	GCAGC	9 cut(s)	40, 630, 912, 1096, 1475, 1572, 1610, 1673, 1870
BsgI	GTGCAG	2 cut(s)	1482, 1571
Bsh1236I	CGCG	1 cut(s)	1114
BshFI	GGCC	6 cut(s)	36, 203, 216, 809, 1709, 1806
BshNI	GGYRCC	1 cut(s)	317
BsiSI	CCGG	8 cut(s)	33, 246, 315, 356, 537, 933, 1710, 1807
BslFI	GGGAC	2 cut(s)	580, 954
BslI	CCNNNNNNNGG	5 cut(s)	443, 1318, 1491, 1716, 1958
BsmAI	GTCTC	8 cut(s)	10, 79, 119, 175, 457, 1555, 1611, 2044
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	2 cut(s)	580, 954
BsmI	GAATGC	2 cut(s)	538, 1165
BsnI	GGCC	6 cut(s)	36, 203, 216, 809, 1709, 1806
Bso31I	GGTCTC	3 cut(s)	10, 79, 175
Bsp1286I	GDGCHC	3 cut(s)	1414, 1874, 2073
Bsp1407I	TGTACA	1 cut(s)	1889
Bsp143I	GATC	5 cut(s)	573, 1071, 1786, 1948, 2060
Bsp19I	CCATGG	1 cut(s)	1556
BspACI	CCGC	3 cut(s)	303, 334, 709
BspANI	GGCC	6 cut(s)	36, 203, 216, 809, 1709, 1806
BspCNI	CTCAG	5 cut(s)	6, 337, 1273, 1813, 2040
BspFNI	CGCG	1 cut(s)	1114
BspHI	TCATGA	1 cut(s)	1000
BspLI	GGNNCC	5 cut(s)	307, 319, 354, 942, 1950
BspMI	ACCTGC	1 cut(s)	1079
BspPI	GGATC	3 cut(s)	1794, 1943, 1956
BspT107I	GGYRCC	1 cut(s)	317
BspTNI	GGTCTC	3 cut(s)	10, 79, 175
BsrBI	CCGCTC	1 cut(s)	336
BsrDI	GCAATG	3 cut(s)	927, 1167, 1608
BsrFI	RCCGGY	2 cut(s)	32, 536
BsrGI	TGTACA	1 cut(s)	1889
BssAI	RCCGGY	2 cut(s)	32, 536
BssECI	CCNNGG	5 cut(s)	211, 1556, 1710, 1792, 2066
BssMI	GATC	5 cut(s)	573, 1071, 1786, 1948, 2060
BssNI	GRCGYC	1 cut(s)	318
BssSI	CACGAG	1 cut(s)	797
BssT1I	CCWWGG	2 cut(s)	211, 1556
Bst2BI	CACGAG	1 cut(s)	797
Bst2UI	CCWGG	3 cut(s)	419, 1793, 2067
Bst4CI	ACNGT	5 cut(s)	278, 571, 1049, 1944, 2075
Bst6I	CTCTTC	3 cut(s)	122, 180, 1549
BstACI	GRCGYC	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	2038
BstAUI	TGTACA	1 cut(s)	1889
BstBAI	YACGTR	1 cut(s)	291
BstC8I	GCNNGC	6 cut(s)	218, 415, 930, 1684, 1804, 1841
BstDEI	CTNAG	7 cut(s)	14, 345, 786, 1281, 1676, 1821, 2048
BstDSI	CCRYGG	1 cut(s)	1556
BstENI	CCTNNNNNAGG	1 cut(s)	441
BstF5I	GGATG	2 cut(s)	621, 1243
BstFNI	CGCG	1 cut(s)	1114
BstH2I	RGCGCY	3 cut(s)	163, 321, 1586
BstHHI	GCGC	5 cut(s)	162, 191, 320, 1114, 1585
BstKTI	GATC	5 cut(s)	576, 1074, 1789, 1951, 2063
BstMAI	GTCTC	8 cut(s)	10, 79, 119, 175, 457, 1555, 1611, 2044
BstMBI	GATC	5 cut(s)	573, 1071, 1786, 1948, 2060
BstMWI	GCNNNNNNNGC	4 cut(s)	553, 1169, 1282, 2038
BstNI	CCWGG	3 cut(s)	419, 1793, 2067
BstNSI	RCATGY	4 cut(s)	1148, 1598, 1843, 1890
BstSCI	CCNGG	7 cut(s)	354, 417, 932, 1709, 1791, 1806, 2065
BstSLI	GKGCMC	2 cut(s)	1874, 2073
BstUI	CGCG	1 cut(s)	1114
BstV1I	GCAGC	9 cut(s)	40, 630, 912, 1096, 1475, 1572, 1610, 1673, 1870
BstV2I	GAAGAC	1 cut(s)	1109
BstX2I	RGATCY	2 cut(s)	1786, 1948
BstYI	RGATCY	2 cut(s)	1786, 1948
BsuI	GTATCC	1 cut(s)	1326
BsuRI	GGCC	6 cut(s)	36, 203, 216, 809, 1709, 1806
BtgI	CCRYGG	1 cut(s)	1556
BtrI	CACGTC	1 cut(s)	844
BtsCI	GGATG	2 cut(s)	621, 1243
BtsIMutI	CAGTG	1 cut(s)	2080
BveI	ACCTGC	1 cut(s)	1079
Cac8I	GCNNGC	6 cut(s)	218, 415, 930, 1684, 1804, 1841
CaiI	CAGNNNCTG	1 cut(s)	2047
CciI	TCATGA	1 cut(s)	1000
CfoI	GCGC	5 cut(s)	162, 191, 320, 1114, 1585
Cfr10I	RCCGGY	2 cut(s)	32, 536
Cfr13I	GGNCC	4 cut(s)	103, 202, 352, 941
CseI	GACGC	2 cut(s)	101, 1103
Csp6I	GTAC	5 cut(s)	457, 781, 858, 1890, 1968
CviQI	GTAC	5 cut(s)	457, 781, 858, 1890, 1968
DdeI	CTNAG	7 cut(s)	14, 345, 786, 1281, 1676, 1821, 2048
DinI	GGCGCC	1 cut(s)	319
DpnI	GATC	5 cut(s)	575, 1073, 1788, 1950, 2062
DpnII	GATC	5 cut(s)	573, 1071, 1786, 1948, 2060
EaeI	YGGCCR	2 cut(s)	807, 1804
Eam1104I	CTCTTC	3 cut(s)	122, 180, 1549
EarI	CTCTTC	3 cut(s)	122, 180, 1549
Eco130I	CCWWGG	2 cut(s)	211, 1556
Eco24I	GRGCYC	1 cut(s)	1414
Eco31I	GGTCTC	3 cut(s)	10, 79, 175
Eco32I	GATATC	1 cut(s)	1642
Eco47I	GGWCC	3 cut(s)	103, 352, 941
Eco57I	CTGAAG	1 cut(s)	1103
EcoNI	CCTNNNNNAGG	1 cut(s)	441
EcoRII	CCWGG	3 cut(s)	417, 1791, 2065
EcoRV	GATATC	1 cut(s)	1642
EcoT14I	CCWWGG	2 cut(s)	211, 1556
EcoT38I	GRGCYC	1 cut(s)	1414
EgeI	GGCGCC	1 cut(s)	319
EheI	GGCGCC	1 cut(s)	319
ErhI	CCWWGG	2 cut(s)	211, 1556
Esp3I	CGTCTC	1 cut(s)	119
FaqI	GGGAC	2 cut(s)	580, 954
FauI	CCCGC	1 cut(s)	702
FauNDI	CATATG	1 cut(s)	1424
FokI	GGATG	2 cut(s)	628, 1250
FriOI	GRGCYC	1 cut(s)	1414
FspBI	CTAG	3 cut(s)	483, 1326, 1907
FspI	TGCGCA	1 cut(s)	190
GlaI	GCGC	5 cut(s)	161, 190, 319, 1113, 1584
HaeII	RGCGCY	3 cut(s)	163, 321, 1586
HaeIII	GGCC	6 cut(s)	36, 203, 216, 809, 1709, 1806
HapII	CCGG	8 cut(s)	33, 246, 315, 356, 537, 933, 1710, 1807
HgaI	GACGC	2 cut(s)	101, 1103
HhaI	GCGC	5 cut(s)	162, 191, 320, 1114, 1585
Hin1I	GRCGYC	1 cut(s)	318
Hin6I	GCGC	5 cut(s)	160, 189, 318, 1112, 1583
HinP1I	GCGC	5 cut(s)	160, 189, 318, 1112, 1583
HincII	GTYRAC	1 cut(s)	964
HindII	GTYRAC	1 cut(s)	964
HindIII	AAGCTT	1 cut(s)	900
HinfI	GANTC	6 cut(s)	254, 323, 795, 997, 1671, 1903
HpaII	CCGG	8 cut(s)	33, 246, 315, 356, 537, 933, 1710, 1807
HphI	GGTGA	6 cut(s)	22, 51, 410, 691, 1545, 2055
Hpy166II	GTNNAC	3 cut(s)	459, 964, 1744
Hpy188I	TCNGA	8 cut(s)	15, 346, 615, 1291, 1313, 1446, 1624, 1670
Hpy188III	TCNNGA	8 cut(s)	129, 251, 483, 577, 1001, 1301, 1610, 1907
Hpy8I	GTNNAC	3 cut(s)	459, 964, 1744
Hpy99I	CGWCG	2 cut(s)	583, 673
HpyAV	CCTTC	5 cut(s)	47, 676, 998, 1394, 1843
HpyCH4III	ACNGT	5 cut(s)	278, 571, 1049, 1944, 2075
HpyCH4IV	ACGT	6 cut(s)	45, 290, 581, 843, 911, 1874
HpyF10VI	GCNNNNNNNGC	4 cut(s)	553, 1169, 1282, 2038
HpyF3I	CTNAG	7 cut(s)	14, 345, 786, 1281, 1676, 1821, 2048
HpySE526I	ACGT	6 cut(s)	45, 290, 581, 843, 911, 1874
Hsp92I	GRCGYC	1 cut(s)	318
HspAI	GCGC	5 cut(s)	160, 189, 318, 1112, 1583
KasI	GGCGCC	1 cut(s)	317
Kzo9I	GATC	5 cut(s)	573, 1071, 1786, 1948, 2060
LmnI	GCTCC	2 cut(s)	311, 1141
Lsp1109I	GCAGC	9 cut(s)	40, 630, 912, 1096, 1475, 1572, 1610, 1673, 1870
LweI	GCATC	8 cut(s)	534, 606, 726, 1143, 1160, 1215, 1807, 1987
MaeI	CTAG	3 cut(s)	483, 1326, 1907
MaeII	ACGT	6 cut(s)	45, 290, 581, 843, 911, 1874
MaeIII	GTNAC	2 cut(s)	398, 1268
MalI	GATC	5 cut(s)	575, 1073, 1788, 1950, 2062
MbiI	CCGCTC	1 cut(s)	336
MboI	GATC	5 cut(s)	573, 1071, 1786, 1948, 2060
MboII	GAAGA	8 cut(s)	109, 112, 167, 1109, 1326, 1536, 1747, 1826
MfeI	CAATTG	2 cut(s)	164, 1374
MflI	RGATCY	2 cut(s)	1786, 1948
MhlI	GDGCHC	3 cut(s)	1414, 1874, 2073
MlsI	TGGCCA	1 cut(s)	809
MluNI	TGGCCA	1 cut(s)	809
Mly113I	GGCGCC	1 cut(s)	318
MlyI	GAGTC	3 cut(s)	248, 789, 1680
MmeI	TCCRAC	5 cut(s)	282, 593, 969, 1926, 2007
Mox20I	TGGCCA	1 cut(s)	809
MscI	TGGCCA	1 cut(s)	809
MseI	TTAA	6 cut(s)	636, 773, 1500, 1511, 1725, 1764
MslI	CAYNNNNRTG	6 cut(s)	464, 594, 1475, 1593, 1844, 2076
Msp20I	TGGCCA	1 cut(s)	809
MspI	CCGG	8 cut(s)	33, 246, 315, 356, 537, 933, 1710, 1807
MspR9I	CCNGG	7 cut(s)	356, 419, 934, 1711, 1793, 1808, 2067
MunI	CAATTG	2 cut(s)	164, 1374
Mva1269I	GAATGC	2 cut(s)	538, 1165
MvaI	CCWGG	3 cut(s)	419, 1793, 2067
MvnI	CGCG	1 cut(s)	1114
MwoI	GCNNNNNNNGC	4 cut(s)	553, 1169, 1282, 2038
NarI	GGCGCC	1 cut(s)	318
NciI	CCSGG	4 cut(s)	356, 934, 1711, 1808
NcoI	CCATGG	1 cut(s)	1556
NdeI	CATATG	1 cut(s)	1424
NdeII	GATC	5 cut(s)	573, 1071, 1786, 1948, 2060
NlaIV	GGNNCC	5 cut(s)	307, 319, 354, 942, 1950
NmuCI	GTSAC	1 cut(s)	398
NsbI	TGCGCA	1 cut(s)	190
NspI	RCATGY	4 cut(s)	1148, 1598, 1843, 1890
PaeI	GCATGC	1 cut(s)	1843
PagI	TCATGA	1 cut(s)	1000
PctI	GAATGC	2 cut(s)	538, 1165
PfeI	GAWTC	3 cut(s)	323, 997, 1903
PflMI	CCANNNNNTGG	1 cut(s)	1958
PleI	GAGTC	3 cut(s)	248, 789, 1679
PluTI	GGCGCC	1 cut(s)	321
PpsI	GAGTC	3 cut(s)	248, 789, 1679
Ppu21I	YACGTR	1 cut(s)	291
PshBI	ATTAAT	1 cut(s)	1500
PsiI	TTATAA	1 cut(s)	1832
Psp6I	CCWGG	3 cut(s)	417, 1791, 2065
PspGI	CCWGG	3 cut(s)	417, 1791, 2065
PspN4I	GGNNCC	5 cut(s)	307, 319, 354, 942, 1950
PspPI	GGNCC	4 cut(s)	103, 202, 352, 941
PstNI	CAGNNNCTG	1 cut(s)	2047
PsuI	RGATCY	2 cut(s)	1786, 1948
RsaI	GTAC	5 cut(s)	458, 782, 859, 1891, 1969
RsaNI	GTAC	5 cut(s)	457, 781, 858, 1890, 1968
RseI	CAYNNNNRTG	6 cut(s)	464, 594, 1475, 1593, 1844, 2076
SaqAI	TTAA	6 cut(s)	636, 773, 1500, 1511, 1725, 1764
Sau3AI	GATC	5 cut(s)	573, 1071, 1786, 1948, 2060
Sau96I	GGNCC	4 cut(s)	103, 202, 352, 941
SchI	GAGTC	3 cut(s)	248, 789, 1680
ScrFI	CCNGG	7 cut(s)	356, 419, 934, 1711, 1793, 1808, 2067
SduI	GDGCHC	3 cut(s)	1414, 1874, 2073
SfaNI	GCATC	8 cut(s)	534, 606, 726, 1143, 1160, 1215, 1807, 1987
SfoI	GGCGCC	1 cut(s)	319
SinI	GGWCC	3 cut(s)	103, 352, 941
SmiMI	CAYNNNNRTG	6 cut(s)	464, 594, 1475, 1593, 1844, 2076
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SphI	GCATGC	1 cut(s)	1843
SsiI	CCGC	3 cut(s)	303, 334, 709
SspDI	GGCGCC	1 cut(s)	317
SspI	AATATT	1 cut(s)	1617
SspMI	CTAG	3 cut(s)	483, 1326, 1907
StyD4I	CCNGG	7 cut(s)	354, 417, 932, 1709, 1791, 1806, 2065
StyI	CCWWGG	2 cut(s)	211, 1556
TaaI	ACNGT	5 cut(s)	278, 571, 1049, 1944, 2075
TaiI	ACGT	6 cut(s)	48, 293, 584, 846, 914, 1877
TaqI	TCGA	3 cut(s)	150, 578, 668
TaqII	GACCGA	1 cut(s)	958
TatI	WGTACW	2 cut(s)	1889, 1967
TauI	GCSGC	1 cut(s)	306
TfiI	GAWTC	3 cut(s)	323, 997, 1903
Tru1I	TTAA	6 cut(s)	636, 773, 1500, 1511, 1725, 1764
Tru9I	TTAA	6 cut(s)	636, 773, 1500, 1511, 1725, 1764
TscAI	CASTG	1 cut(s)	2080
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	9 cut(s)	53, 643, 925, 1109, 1463, 1585, 1598, 1686, 1883
Tsp45I	GTSAC	1 cut(s)	398
TspGWI	ACGGA	1 cut(s)	1605
TspRI	CASTG	1 cut(s)	2080
Van91I	CCANNNNNTGG	1 cut(s)	1958
VpaK11BI	GGWCC	3 cut(s)	103, 352, 941
VspI	ATTAAT	1 cut(s)	1500
XagI	CCTNNNNNAGG	1 cut(s)	441
XapI	RAATTY	4 cut(s)	673, 1078, 1432, 1933
XbaI	TCTAGA	2 cut(s)	482, 1906
XceI	RCATGY	4 cut(s)	1148, 1598, 1843, 1890
XspI	CTAG	3 cut(s)	483, 1326, 1907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.