MD13G1232800.v1.1

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0016403
Physical Location & Seq
Reverse (-)
23213391 .. 23213771
381 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1232800.v1.1.491

Sequence Viewer

Length: 147 bp
ATGGTAGTGTTTCCTGATGCCAATTTGGGGTGGCTTCAGCCTTCAGATCCTTCGACCTCCTCATCGGCAGCCGAGGATGAGCATGATGATGTGTGGTTTTGGCTAGAGAAAGGGAAGCCATGTGAATCCAGGTTTATCCACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0042773 GO:0042775 GO:0042776 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046872 GO:0046907 GO:0046914 GO:0050897 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

49

Amino Acids

5.48

Weight (kDa)

4.35

Isoelectric Point (pI)

62.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 41
AcuI CTGAAG 2 cut(s) 20, 27
AfiI CCNNNNNNNGG 1 cut(s) 27
AjnI CCWGG 1 cut(s) 128
AlwI GGATC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 130
BfaI CTAG 1 cut(s) 104
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 130
BmsI GCATC 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 27
Bsp143I GATC 1 cut(s) 46
BspPI GGATC 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 130
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BtsCI GGATG 1 cut(s) 82
CviAII CATG 2 cut(s) 83, 120
CviJI RGCY 5 cut(s) 34, 40, 71, 103, 118
CviKI_1 RGCY 5 cut(s) 34, 40, 71, 103, 118
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eco57I CTGAAG 2 cut(s) 20, 27
EcoRII CCWGG 1 cut(s) 128
FaeI CATG 2 cut(s) 86, 123
FaiI YATR 2 cut(s) 84, 121
FatI CATG 2 cut(s) 82, 119
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 104
GluI GCNGC 1 cut(s) 69
Hin1II CATG 2 cut(s) 86, 123
HinfI GANTC 1 cut(s) 125
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 51, 60
Hsp92II CATG 2 cut(s) 86, 123
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 3 cut(s) 27, 115, 142
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 1 cut(s) 7
MaeI CTAG 1 cut(s) 104
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MflI RGATCY 1 cut(s) 46
MluCI AATT 1 cut(s) 22
MnlI CCTC 3 cut(s) 67, 67, 70
MslI CAYNNNNRTG 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
NdeII GATC 1 cut(s) 46
NlaIII CATG 2 cut(s) 86, 123
NmeAIII GCCGAG 1 cut(s) 97
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PsuI RGATCY 1 cut(s) 46
RseI CAYNNNNRTG 1 cut(s) 87
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 130
SetI ASST 2 cut(s) 59, 134
SfaNI GCATC 1 cut(s) 7
SgeI CNNG 7 cut(s) 26, 85, 95, 116, 132, 141, 142
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 1 cut(s) 22
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 128
TaqI TCGA 1 cut(s) 53
TasI AATT 1 cut(s) 22
TfiI GAWTC 1 cut(s) 125
TseI GCWGC 1 cut(s) 68
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.