Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0016403

Physical Location & Seq

Genomic Coordinates Forward (+)

42076628 .. 42096247

Gene Structure 19620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG220100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCTCTTGCATTACAGATTAGCTTGGAGAGAGCATGGACAACAACTTCAACTTCAACTGTTATTTGGGAGGTTGCAGGGAGAGACAGCGGCAGCAGTTAGGAGAAGATCTGAGACTACTCCTGAGCTGGACAAGCACAATAACCAGCCCCGACCAGAACTCCCGTGCTGCAGGACTTGCAGAGGCAGCAATTGCGACCATCCGGTCACCTGGCGAAGGTCGATGGACGTATTACAGGCGGTCGGAGTTCAAAGCATTAGCAAGATCGACGCCCACCAAATCCAAAGACTTCTCTCGAAGCAGCCCCACCGTGTCCTCCACCTCAACGACGCCGGCAAGCTCCACCGTGAGCTCAACTTCCCGCGCAGCCGTAAGGTCTCCAAGTCTTTCCAGTGCCACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

134

Amino Acids

15.6

Weight (kDa)

10.36

Isoelectric Point (pI)

57.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016403)

Species	Orthologous Gene IDs
malus_domestica	MD13G1232800.v1.1
rosa_chinensis	RchiOBHm_Chr3g0493471 RchiOBHm_Chr5g0059031
rosa_laevigata	RLG00000002039
rosa_multiflora	Rmu_sc0009682.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023510
rosa_rugosa	Rorug05G0220100
rosa_samantha	Rh1AG220100 Rh2AG015800 Rh3BG140000 Rh3CG141700 Rh3CG150100 Rh4AG021900 Rh5BG396800 Rh6BG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AccII	CGCG	1 cut(s)	364
AciI	CCGC	3 cut(s)	89, 239, 362
AcyI	GRCGYC	2 cut(s)	270, 330
AfiI	CCNNNNNNNGG	1 cut(s)	216
AgsI	TTSAA	3 cut(s)	50, 56, 251
AjnI	CCWGG	1 cut(s)	209
AluBI	AGCT	4 cut(s)	23, 127, 340, 352
AluI	AGCT	4 cut(s)	23, 127, 340, 352
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	3 cut(s)	77, 107, 382
ApeKI	GCWGC	5 cut(s)	92, 168, 186, 301, 366
AspLEI	GCGC	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	5 cut(s)	104, 155, 198, 313, 378
BccI	CCATC	2 cut(s)	207, 217
BceAI	ACGGC	1 cut(s)	354
BciT130I	CCWGG	1 cut(s)	211
BcoDI	GTCTC	3 cut(s)	77, 107, 382
BfmI	CTRYAG	1 cut(s)	169
BglII	AGATCT	1 cut(s)	107
BisI	GCNGC	6 cut(s)	90, 93, 169, 187, 302, 367
BlsI	GCNGC	6 cut(s)	91, 94, 170, 188, 303, 368
Bme1390I	CCNGG	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	211
Bpu10I	CCTNAGC	1 cut(s)	123
BsaHI	GRCGYC	2 cut(s)	270, 330
BsaI	GGTCTC	1 cut(s)	382
BsaWI	WCCGGW	1 cut(s)	202
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	391
BseBI	CCWGG	1 cut(s)	211
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	102, 114
BseNI	ACTGG	1 cut(s)	391
BseXI	GCAGC	5 cut(s)	104, 155, 198, 313, 378
Bsh1236I	CGCG	1 cut(s)	364
Bsh1285I	CGRYCG	1 cut(s)	243
BsiEI	CGRYCG	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	2 cut(s)	203, 333
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmAI	GTCTC	3 cut(s)	77, 107, 382
Bso31I	GGTCTC	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	107, 264
BspACI	CCGC	3 cut(s)	89, 239, 362
BspCNI	CTCAG	2 cut(s)	103, 115
BspFNI	CGCG	1 cut(s)	364
BspMAI	CTGCAG	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	382
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	1 cut(s)	391
BssAI	RCCGGY	1 cut(s)	332
BssMI	GATC	2 cut(s)	107, 264
BssNI	GRCGYC	2 cut(s)	270, 330
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	3 cut(s)	60, 311, 347
BstACI	GRCGYC	2 cut(s)	270, 330
BstAPI	GCANNNNNTGC	2 cut(s)	177, 192
BstC8I	GCNNGC	2 cut(s)	334, 338
BstDEI	CTNAG	2 cut(s)	111, 123
BstEII	GGTNACC	1 cut(s)	205
BstENI	CCTNNNNNAGG	1 cut(s)	214
BstF5I	GGATG	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	364
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	2 cut(s)	110, 267
BstMAI	GTCTC	3 cut(s)	77, 107, 382
BstMBI	GATC	2 cut(s)	107, 264
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	4 cut(s)	133, 177, 186, 192
BstNI	CCWGG	1 cut(s)	211
BstPI	GGTNACC	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	169
BstUI	CGCG	1 cut(s)	364
BstV1I	GCAGC	5 cut(s)	104, 155, 198, 313, 378
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	398
Cac8I	GCNNGC	2 cut(s)	334, 338
CfoI	GCGC	1 cut(s)	366
Cfr10I	RCCGGY	1 cut(s)	332
CseI	GACGC	2 cut(s)	278, 338
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	7 cut(s)	23, 127, 148, 304, 340, 352, 369
CviKI_1	RGCY	7 cut(s)	23, 127, 148, 304, 340, 352, 369
DdeI	CTNAG	2 cut(s)	111, 123
DpnI	GATC	2 cut(s)	109, 266
DpnII	GATC	2 cut(s)	107, 264
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Ecl136II	GAGCTC	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	354
Eco31I	GGTCTC	1 cut(s)	382
Eco53kI	GAGCTC	1 cut(s)	352
Eco91I	GGTNACC	1 cut(s)	205
EcoICRI	GAGCTC	1 cut(s)	352
EcoNI	CCTNNNNNAGG	1 cut(s)	214
EcoO65I	GGTNACC	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	354
FaeI	CATG	1 cut(s)	38
FaiI	YATR	1 cut(s)	36
FatI	CATG	1 cut(s)	34
FauI	CCCGC	1 cut(s)	369
Fnu4HI	GCNGC	6 cut(s)	90, 93, 169, 187, 302, 367
FokI	GGATG	1 cut(s)	186
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	6 cut(s)	90, 93, 169, 187, 302, 367
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	6 cut(s)	90, 93, 169, 187, 302, 367
HapII	CCGG	2 cut(s)	203, 333
HgaI	GACGC	2 cut(s)	278, 338
HhaI	GCGC	1 cut(s)	366
Hin1I	GRCGYC	2 cut(s)	270, 330
Hin1II	CATG	1 cut(s)	38
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HpaII	CCGG	2 cut(s)	203, 333
HphI	GGTGA	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	112, 245
Hpy188III	TCNNGA	2 cut(s)	122, 295
Hpy99I	CGWCG	2 cut(s)	272, 332
HpyAV	CCTTC	1 cut(s)	210
HpyCH4III	ACNGT	3 cut(s)	60, 311, 347
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	4 cut(s)	10, 76, 171, 180
HpyF10VI	GCNNNNNNNGC	4 cut(s)	133, 177, 186, 192
HpyF3I	CTNAG	2 cut(s)	111, 123
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	2 cut(s)	270, 330
Hsp92II	CATG	1 cut(s)	38
HspAI	GCGC	1 cut(s)	364
KroI	GCCGGC	1 cut(s)	332
KroNI	GCCGGC	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	107, 264
LmnI	GCTCC	1 cut(s)	345
Lsp1109I	GCAGC	5 cut(s)	104, 155, 198, 313, 378
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	2 cut(s)	109, 266
MboI	GATC	2 cut(s)	107, 264
MboII	GAAGA	1 cut(s)	117
MfeI	CAATTG	1 cut(s)	190
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	4 cut(s)	63, 176, 326, 332
MroNI	GCCGGC	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	2 cut(s)	203, 333
MspR9I	CCNGG	1 cut(s)	211
MunI	CAATTG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	211
MvnI	CGCG	1 cut(s)	364
MwoI	GCNNNNNNNGC	4 cut(s)	133, 177, 186, 192
NaeI	GCCGGC	1 cut(s)	334
NdeII	GATC	2 cut(s)	107, 264
NgoMIV	GCCGGC	1 cut(s)	332
NlaIII	CATG	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	205
PdiI	GCCGGC	1 cut(s)	334
PkrI	GCNGC	6 cut(s)	91, 94, 170, 188, 303, 368
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	209
PspEI	GGTNACC	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	209
PstI	CTGCAG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	354
SatI	GCNGC	6 cut(s)	90, 93, 169, 187, 302, 367
Sau3AI	GATC	2 cut(s)	107, 264
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	354
SfcI	CTRYAG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	190
SsiI	CCGC	3 cut(s)	89, 239, 362
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	209
TaaI	ACNGT	3 cut(s)	60, 311, 347
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	3 cut(s)	221, 267, 296
TasI	AATT	1 cut(s)	190
TauI	GCSGC	1 cut(s)	92
TscAI	CASTG	1 cut(s)	398
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	5 cut(s)	92, 168, 186, 301, 366
Tsp45I	GTSAC	1 cut(s)	205
TspRI	CASTG	1 cut(s)	398
XagI	CCTNNNNNAGG	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.