Rh3BG140000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
11836886 .. 11844496
7611 bp
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UTR
Exon/CDS
Intron
Rh3BG140000.1

Sequence Viewer

Length: 222 bp
ATGATACAAGCGGTGATGGTGATAAAATACTCAGGGCAAGCCTCGCCTTGCCAAAAAAATTGGCTGATATTTCCAGTTTTTGAGGTCAGCCTGTGGAGAAGATACTCAGCTTGTGTACAAGTATTTAAGAAATCTCACTATGAGTATTATAAATCAAACCCAATACAGCATTACATAACCCACTCCATCCCAATAGTATTGTTATCACATACAAGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.64

Weight (kDa)

9.47

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AciI CCGC 1 cut(s) 11
AfaI GTAC 1 cut(s) 117
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 25, 31
BccI CCATC 2 cut(s) 10, 194
Bse1I ACTGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 186
BseMII CTCAG 2 cut(s) 45, 120
BseNI ACTGG 1 cut(s) 74
Bsp1407I TGTACA 1 cut(s) 115
BspACI CCGC 1 cut(s) 11
BspCNI CTCAG 2 cut(s) 44, 119
BsrGI TGTACA 1 cut(s) 115
BsrI ACTGG 1 cut(s) 74
BstAUI TGTACA 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 31, 106
BstF5I GGATG 1 cut(s) 186
BstMWI GCNNNNNNNGC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 116
CviJI RGCY 4 cut(s) 41, 64, 90, 110
CviKI_1 RGCY 4 cut(s) 41, 64, 90, 110
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 2 cut(s) 31, 106
FaiI YATR 4 cut(s) 141, 150, 176, 210
FokI GGATG 1 cut(s) 173
HphI GGTGA 2 cut(s) 25, 31
Hpy166II GTNNAC 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 2 cut(s) 31, 106
LpnPI CCDG 3 cut(s) 18, 87, 104
MboII GAAGA 1 cut(s) 111
MluCI AATT 1 cut(s) 58
MnlI CCTC 2 cut(s) 52, 76
MseI TTAA 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 43
PsiI TTATAA 1 cut(s) 150
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 126
SetI ASST 2 cut(s) 87, 112
SgeI CNNG 9 cut(s) 20, 45, 50, 55, 60, 86, 103, 123, 131
Sse9I AATT 1 cut(s) 58
SsiI CCGC 1 cut(s) 11
TasI AATT 1 cut(s) 58
TatI WGTACW 1 cut(s) 115
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.