Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0016403

Physical Location & Seq

Genomic Coordinates Reverse (-)

64238036 .. 64248554

Gene Structure 10519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG396800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCATTTTTCTGCCAGTCTAGTCCCTATCGAATCTATGCCTTATCTCTAGGTCTCCACAAAGATCTTAGTCAATGCTATCGGTTTCGAGCTCTGGTTGTCCTCGGGAGATTCCTTGATATGGGACCCTGGGCTGTAGATCTGAGAAAGAAGGGAATTTGGCTTAAGCTACTGGTAGAACGAGTTGAGCTTGTTCCAGTTGCTGTTGAGGGAGAGACAGCGGTAGCAGCTAGGAGAAGATCTGAGACTACTCCTGTGCTGGACAAGCACAATAACCAGGTTAGGGCATTATTAATCAGACAGGGTCAGGACTGTTTGGTTTTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0001101 GO:0001558 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008361 GO:0009267 GO:0009605 GO:0009719 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009893 GO:0009894 GO:0009987 GO:0009991 GO:0010033 GO:0010073 GO:0010074 GO:0010154 GO:0010243 GO:0010492 GO:0010506 GO:0010562 GO:0010604 GO:0016043 GO:0019220 GO:0019222 GO:0019827 GO:0022414 GO:0023052 GO:0030307 GO:0030674 GO:0031323 GO:0031325 GO:0031329 GO:0031399 GO:0031401 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031929 GO:0031931 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032535 GO:0032991 GO:0033554 GO:0033674 GO:0035556 GO:0038201 GO:0040008 GO:0042221 GO:0042325 GO:0042327 GO:0042594 GO:0043085 GO:0043200 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045927 GO:0045937 GO:0048316 GO:0048507 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060090 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071840 GO:0071900 GO:0071902 GO:0080008 GO:0080090 GO:0090066 GO:0098727 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04714 ko04910 ko05206 map04136 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04714 map04910 map05206

Pfam Domains

Protein Families

HEAT Raptor_N WD40

Protein Analysis

109

Amino Acids

12.55

Weight (kDa)

9.66

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016403)

Species	Orthologous Gene IDs
malus_domestica	MD13G1232800.v1.1
rosa_chinensis	RchiOBHm_Chr3g0493471 RchiOBHm_Chr5g0059031
rosa_laevigata	RLG00000002039
rosa_multiflora	Rmu_sc0009682.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023510
rosa_rugosa	Rorug05G0220100
rosa_samantha	Rh1AG220100 Rh2AG015800 Rh3BG140000 Rh3CG141700 Rh3CG150100 Rh4AG021900 Rh5BG396800 Rh6BG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	221
AcsI	RAATTY	1 cut(s)	156
AfiI	CCNNNNNNNGG	2 cut(s)	121, 283
AflII	CTTAAG	1 cut(s)	164
AjnI	CCWGG	2 cut(s)	128, 276
AluBI	AGCT	4 cut(s)	92, 169, 190, 230
AluI	AGCT	4 cut(s)	92, 169, 190, 230
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	3 cut(s)	59, 209, 239
AlwNI	CAGNNNCTG	1 cut(s)	203
Ama87I	CYCGRG	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	156
AseI	ATTAAT	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	125
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	239
BciT130I	CCWGG	2 cut(s)	130, 278
BcoDI	GTCTC	3 cut(s)	59, 209, 239
BfaI	CTAG	3 cut(s)	21, 50, 231
BfmI	CTRYAG	1 cut(s)	135
BfrI	CTTAAG	1 cut(s)	164
BglII	AGATCT	3 cut(s)	64, 139, 239
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	2 cut(s)	130, 278
Bme18I	GGWCC	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	2 cut(s)	126, 127
BmrFI	CCNGG	2 cut(s)	130, 278
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	3 cut(s)	103, 128, 129
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 283
Bse1I	ACTGG	3 cut(s)	16, 177, 197
BseBI	CCWGG	2 cut(s)	130, 278
BseDI	CCNNGG	3 cut(s)	103, 128, 129
BseLI	CCNNNNNNNGG	2 cut(s)	121, 283
BseMII	CTCAG	2 cut(s)	134, 234
BseNI	ACTGG	3 cut(s)	16, 177, 197
BseXI	GCAGC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	94
BsiHKCI	CYCGRG	1 cut(s)	104
BslFI	GGGAC	2 cut(s)	9, 138
BslI	CCNNNNNNNGG	2 cut(s)	121, 283
BsmAI	GTCTC	3 cut(s)	59, 209, 239
BsmFI	GGGAC	2 cut(s)	9, 138
Bso31I	GGTCTC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	3 cut(s)	64, 139, 239
BspACI	CCGC	1 cut(s)	221
BspCNI	CTCAG	2 cut(s)	135, 235
BspLI	GGNNCC	2 cut(s)	126, 127
BspTI	CTTAAG	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	59
BsrI	ACTGG	3 cut(s)	16, 177, 197
BssECI	CCNNGG	3 cut(s)	103, 128, 129
BssMI	GATC	3 cut(s)	64, 139, 239
Bst2UI	CCWGG	2 cut(s)	130, 278
Bst4CI	ACNGT	1 cut(s)	314
BstAFI	CTTAAG	1 cut(s)	164
BstDEI	CTNAG	3 cut(s)	68, 143, 243
BstKTI	GATC	3 cut(s)	67, 142, 242
BstMAI	GTCTC	3 cut(s)	59, 209, 239
BstMBI	GATC	3 cut(s)	64, 139, 239
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 265
BstNI	CCWGG	2 cut(s)	130, 278
BstSCI	CCNGG	2 cut(s)	128, 276
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	239
BstX2I	RGATCY	3 cut(s)	64, 139, 239
BstYI	RGATCY	3 cut(s)	64, 139, 239
CaiI	CAGNNNCTG	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	125
CsiI	ACCWGGT	1 cut(s)	276
CviJI	RGCY	6 cut(s)	92, 134, 163, 169, 190, 230
CviKI_1	RGCY	6 cut(s)	92, 134, 163, 169, 190, 230
DdeI	CTNAG	3 cut(s)	68, 143, 243
DpnI	GATC	3 cut(s)	66, 141, 241
DpnII	GATC	3 cut(s)	64, 139, 239
Ecl136II	GAGCTC	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	94
Eco31I	GGTCTC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	125
Eco53kI	GAGCTC	1 cut(s)	92
Eco88I	CYCGRG	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRII	CCWGG	2 cut(s)	128, 276
EcoT38I	GRGCYC	1 cut(s)	94
FaiI	YATR	2 cut(s)	39, 122
FaqI	GGGAC	2 cut(s)	9, 138
Fnu4HI	GCNGC	1 cut(s)	228
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	3 cut(s)	21, 50, 231
GluI	GCNGC	1 cut(s)	228
HinfI	GANTC	2 cut(s)	33, 111
Hpy188I	TCNGA	3 cut(s)	144, 244, 299
Hpy188III	TCNNGA	2 cut(s)	106, 308
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 265
HpyF3I	CTNAG	3 cut(s)	68, 143, 243
KflI	GGGWCCC	1 cut(s)	125
Kzo9I	GATC	3 cut(s)	64, 139, 239
Lsp1109I	GCAGC	1 cut(s)	239
MabI	ACCWGGT	1 cut(s)	276
MaeI	CTAG	3 cut(s)	21, 50, 231
MalI	GATC	3 cut(s)	66, 141, 241
MboI	GATC	3 cut(s)	64, 139, 239
MboII	GAAGA	1 cut(s)	249
MflI	RGATCY	3 cut(s)	64, 139, 239
MhlI	GDGCHC	1 cut(s)	94
MluCI	AATT	1 cut(s)	156
MnlI	CCTC	2 cut(s)	113, 202
MseI	TTAA	2 cut(s)	165, 293
MspA1I	CMGCKG	1 cut(s)	221
MspCI	CTTAAG	1 cut(s)	164
MspR9I	CCNGG	2 cut(s)	130, 278
MvaI	CCWGG	2 cut(s)	130, 278
MwoI	GCNNNNNNNGC	2 cut(s)	227, 265
NdeII	GATC	3 cut(s)	64, 139, 239
NlaIV	GGNNCC	2 cut(s)	126, 127
PasI	CCCWGGG	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	33, 111
PflFI	GACNNNGTC	1 cut(s)	303
PkrI	GCNGC	1 cut(s)	229
PpuMI	RGGWCCY	1 cut(s)	125
PshBI	ATTAAT	1 cut(s)	293
Psp124BI	GAGCTC	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	125
Psp6I	CCWGG	2 cut(s)	128, 276
PspGI	CCWGG	2 cut(s)	128, 276
PspN4I	GGNNCC	2 cut(s)	126, 127
PspPI	GGNCC	1 cut(s)	125
PspPPI	RGGWCCY	1 cut(s)	125
PstNI	CAGNNNCTG	1 cut(s)	203
PsuI	RGATCY	3 cut(s)	64, 139, 239
PsyI	GACNNNGTC	1 cut(s)	303
SacI	GAGCTC	1 cut(s)	94
SaqAI	TTAA	2 cut(s)	165, 293
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	3 cut(s)	64, 139, 239
Sau96I	GGNCC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	130, 278
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	6 cut(s)	55, 94, 171, 192, 232, 282
SexAI	ACCWGGT	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	1 cut(s)	221
SspMI	CTAG	3 cut(s)	21, 50, 231
SstI	GAGCTC	1 cut(s)	94
StyD4I	CCNGG	2 cut(s)	128, 276
TaaI	ACNGT	1 cut(s)	314
TaqI	TCGA	2 cut(s)	31, 88
TasI	AATT	1 cut(s)	156
TfiI	GAWTC	2 cut(s)	33, 111
Tru1I	TTAA	2 cut(s)	165, 293
Tru9I	TTAA	2 cut(s)	165, 293
TseI	GCWGC	1 cut(s)	227
Tth111I	GACNNNGTC	1 cut(s)	303
Vha464I	CTTAAG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	293
XapI	RAATTY	1 cut(s)	156
XspI	CTAG	3 cut(s)	21, 50, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.