Rroxscaffold_1G00023510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016403
Physical Location & Seq
Forward (+)
29024936 .. 29035102
10167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00023510.1

Sequence Viewer

Length: 654 bp
ATGCCGGCACCGTGGGGTGTAGTCGTTGGGGCGTCCCTTGACCGACTTCTTGATCAAACGATGTGGAAGAGGAGAGCACAAACCTTGTCACAAGCCTTCACCAAAAATGTTCCTCGCGAGCGTTCACGAACTCCTCGCCCGCGACCATTCGTTGAATGTCACGCGAACAGCACTCTTGTTGGCCTCCTTTGTGAGCTAATTCTTTTCGCGGCCATTCGCTCGCGGCCACCTCCTAGCGGCCATCTCCTTCGTGGTCACTCGCTTATGCGGGTTGGGATGGGGTCTGTCTCCATTTGTACTACTCAAGAGGTTTGCGTCGGCGGTAGGGGACAGGTGGCAGTCCTTTTGAAAGAATGTCGAGATATACGGCTTCGTGGTGCATCTTCGGGTCATGATAGTTATGACAATCTTTGTTGTGGTGCACTCGGAATGCGATGCTTGAAAAAGTCATATCGAACATCTTTTGCTGCGGGGAGGTTGCGAGAGAGACGAGACAGTAGCAGCTATGGGTTGCGGGGAGAGACGATGCGTGATGGTGCAACTGCATTAGTGCTAGCGAGTGGGAAGAAGGCACTTGAATGCAATAGTGCCAGCATGTGTATTTTTTGGAATAATGATATTGTATCAGCTTTTGCTATCTTTCATTGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

23.8

Weight (kDa)

9.86

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 7
AccII CGCG 5 cut(s) 117, 142, 164, 209, 223
AciI CCGC 8 cut(s) 140, 209, 223, 237, 268, 321, 470, 514
AcoI YGGCCR 3 cut(s) 210, 224, 238
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 4 cut(s) 155, 349, 442, 578
AluBI AGCT 3 cut(s) 196, 504, 629
AluI AGCT 3 cut(s) 196, 504, 629
Alw21I GWGCWC 2 cut(s) 79, 424
Alw26I GTCTC 4 cut(s) 292, 481, 486, 515
Alw44I GTGCAC 1 cut(s) 420
AoxI GGCC 4 cut(s) 181, 210, 224, 238
ApaLI GTGCAC 1 cut(s) 420
ApeKI GCWGC 2 cut(s) 467, 501
AsuHPI GGTGA 1 cut(s) 91
AsuNHI GCTAGC 1 cut(s) 553
BaeGI GKGCMC 1 cut(s) 424
BanI GGYRCC 1 cut(s) 7
Bbv12I GWGCWC 2 cut(s) 79, 424
BbvI GCAGC 2 cut(s) 454, 513
BccI CCATC 3 cut(s) 249, 271, 527
BceAI ACGGC 1 cut(s) 383
BclI TGATCA 1 cut(s) 52
BcoDI GTCTC 4 cut(s) 292, 481, 486, 515
BfaI CTAG 2 cut(s) 234, 554
BisI GCNGC 5 cut(s) 210, 224, 238, 468, 502
BlsI GCNGC 5 cut(s) 211, 225, 239, 469, 503
BmiI GGNNCC 1 cut(s) 9
BmsI GCATC 3 cut(s) 389, 425, 516
BmtI GCTAGC 1 cut(s) 557
BpuEI CTTGAG 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse118I RCCGGY 1 cut(s) 4
BseDI CCNNGG 1 cut(s) 11
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 236
BseRI GAGGAG 2 cut(s) 85, 123
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 2 cut(s) 454, 513
Bsh1236I CGCG 5 cut(s) 117, 142, 164, 209, 223
BshFI GGCC 4 cut(s) 183, 212, 226, 240
BshNI GGYRCC 1 cut(s) 7
BsiHKAI GWGCWC 2 cut(s) 79, 424
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 2 cut(s) 19, 342
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 4 cut(s) 292, 481, 486, 515
BsmBI CGTCTC 2 cut(s) 481, 515
BsmFI GGGAC 2 cut(s) 19, 342
BsmI GAATGC 2 cut(s) 435, 584
BsnI GGCC 4 cut(s) 183, 212, 226, 240
Bsp1286I GDGCHC 2 cut(s) 79, 424
Bsp143I GATC 1 cut(s) 52
Bsp68I TCGCGA 1 cut(s) 117
BspACI CCGC 8 cut(s) 140, 209, 223, 237, 268, 321, 470, 514
BspANI GGCC 4 cut(s) 183, 212, 226, 240
BspFNI CGCG 5 cut(s) 117, 142, 164, 209, 223
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 1 cut(s) 9
BspOI GCTAGC 1 cut(s) 557
BspT107I GGYRCC 1 cut(s) 7
BsrFI RCCGGY 1 cut(s) 4
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 1 cut(s) 52
BssNI GRCGYC 1 cut(s) 32
Bst4CI ACNGT 2 cut(s) 12, 497
Bst6I CTCTTC 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 32
BstC8I GCNNGC 6 cut(s) 6, 119, 140, 221, 555, 592
BstDSI CCRYGG 1 cut(s) 11
BstF5I GGATG 1 cut(s) 282
BstFNI CGCG 5 cut(s) 117, 142, 164, 209, 223
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 4 cut(s) 292, 481, 486, 515
BstMBI GATC 1 cut(s) 52
BstNSI RCATGY 1 cut(s) 598
BstSLI GKGCMC 1 cut(s) 424
BstUI CGCG 5 cut(s) 117, 142, 164, 209, 223
BstV1I GCAGC 2 cut(s) 454, 513
BsuRI GGCC 4 cut(s) 183, 212, 226, 240
BtgI CCRYGG 1 cut(s) 11
BtgZI GCGATG 1 cut(s) 448
BtsCI GGATG 1 cut(s) 282
BtuMI TCGCGA 1 cut(s) 117
Cac8I GCNNGC 6 cut(s) 6, 119, 140, 221, 555, 592
CciI TCATGA 1 cut(s) 391
Cfr10I RCCGGY 1 cut(s) 4
CseI GACGC 2 cut(s) 21, 304
Csp6I GTAC 1 cut(s) 297
CspCI CAANNNNNGTGG 2 cut(s) 44, 79
CviAII CATG 2 cut(s) 392, 595
CviJI RGCY 9 cut(s) 95, 183, 196, 212, 226, 240, 370, 504, 629
CviKI_1 RGCY 9 cut(s) 95, 183, 196, 212, 226, 240, 370, 504, 629
CviQI GTAC 1 cut(s) 297
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
EaeI YGGCCR 3 cut(s) 210, 224, 238
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Esp3I CGTCTC 2 cut(s) 481, 515
FaeI CATG 2 cut(s) 395, 598
FaiI YATR 7 cut(s) 266, 365, 393, 402, 451, 507, 596
FaqI GGGAC 2 cut(s) 19, 342
FatI CATG 2 cut(s) 391, 594
FauI CCCGC 4 cut(s) 147, 261, 463, 507
FbaI TGATCA 1 cut(s) 52
Fnu4HI GCNGC 5 cut(s) 210, 224, 238, 468, 502
FokI GGATG 1 cut(s) 289
Fsp4HI GCNGC 5 cut(s) 210, 224, 238, 468, 502
FspBI CTAG 2 cut(s) 234, 554
GluI GCNGC 5 cut(s) 210, 224, 238, 468, 502
HaeIII GGCC 4 cut(s) 183, 212, 226, 240
HapII CCGG 1 cut(s) 5
HgaI GACGC 2 cut(s) 21, 304
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 2 cut(s) 395, 598
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 2 cut(s) 125, 422
Hpy188I TCNGA 1 cut(s) 428
Hpy188III TCNNGA 6 cut(s) 50, 116, 126, 305, 359, 392
Hpy8I GTNNAC 2 cut(s) 125, 422
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 3 cut(s) 106, 257, 562
HpyCH4III ACNGT 2 cut(s) 12, 497
HpyCH4V TGCA 5 cut(s) 380, 422, 539, 545, 582
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 2 cut(s) 395, 598
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Ksp22I TGATCA 1 cut(s) 52
Kzo9I GATC 1 cut(s) 52
LpnPI CCDG 3 cut(s) 18, 317, 604
Lsp1109I GCAGC 2 cut(s) 454, 513
LweI GCATC 3 cut(s) 389, 425, 516
MaeI CTAG 2 cut(s) 234, 554
MaeIII GTNAC 3 cut(s) 87, 158, 254
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 3 cut(s) 79, 375, 577
MhlI GDGCHC 2 cut(s) 79, 424
MluCI AATT 2 cut(s) 198, 649
MnlI CCTC 7 cut(s) 63, 123, 144, 194, 240, 301, 468
MroNI GCCGGC 1 cut(s) 4
MslI CAYNNNNRTG 1 cut(s) 577
MspI CCGG 1 cut(s) 5
Mva1269I GAATGC 2 cut(s) 435, 584
MvnI CGCG 5 cut(s) 117, 142, 164, 209, 223
NaeI GCCGGC 1 cut(s) 6
NdeII GATC 1 cut(s) 52
NgoMIV GCCGGC 1 cut(s) 4
NheI GCTAGC 1 cut(s) 553
NlaIII CATG 2 cut(s) 395, 598
NlaIV GGNNCC 1 cut(s) 9
NmuCI GTSAC 3 cut(s) 87, 158, 254
NruI TCGCGA 1 cut(s) 117
NspI RCATGY 1 cut(s) 598
PagI TCATGA 1 cut(s) 391
PctI GAATGC 2 cut(s) 435, 584
PdiI GCCGGC 1 cut(s) 6
PkrI GCNGC 5 cut(s) 211, 225, 239, 469, 503
PspN4I GGNNCC 1 cut(s) 9
RruI TCGCGA 1 cut(s) 117
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
RseI CAYNNNNRTG 1 cut(s) 577
SatI GCNGC 5 cut(s) 210, 224, 238, 468, 502
Sau3AI GATC 1 cut(s) 52
SduI GDGCHC 2 cut(s) 79, 424
SetI ASST 8 cut(s) 86, 198, 232, 312, 336, 479, 506, 631
SfaNI GCATC 3 cut(s) 389, 425, 516
SmiMI CAYNNNNRTG 1 cut(s) 577
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 2 cut(s) 198, 649
SsiI CCGC 8 cut(s) 140, 209, 223, 237, 268, 321, 470, 514
SspMI CTAG 2 cut(s) 234, 554
TaaI ACNGT 2 cut(s) 12, 497
TaqI TCGA 2 cut(s) 358, 454
TaqII GACCGA 1 cut(s) 57
TasI AATT 2 cut(s) 198, 649
TatI WGTACW 1 cut(s) 296
TauI GCSGC 3 cut(s) 212, 226, 240
TseFI GTSAC 3 cut(s) 87, 158, 254
TseI GCWGC 2 cut(s) 467, 501
Tsp45I GTSAC 3 cut(s) 87, 158, 254
TspDTI ATGAA 1 cut(s) 632
VneI GTGCAC 1 cut(s) 420
XceI RCATGY 1 cut(s) 598
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XspI CTAG 2 cut(s) 234, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.