RLG00000002039

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016403
Physical Location & Seq
Reverse (-)
24593267 .. 24595746
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002039

Sequence Viewer

Length: 459 bp
ATGCTTAACCTTAAACAAGCTCGCAAGATTAGAATTGCTGAAAGAGTAACTGCACTGGAAGAACTGCTTCCACAATCTGTAGAGGAAACACCTACTATACTCAAGTCCTACCATGACAAAAGAATAATTGGATGCCCTGGTGTTGGAGTGTTTGACGCCGTTGGCCTGGCTTCTCAAGAACTATCCCCCATCCTCGATGGGGCTTGTTTCATATACCATCACTGGGATTGGATCATTTGTTCTCGTTGTCTGGTAGTGCCATGTGACAGGGGGTGGTCAAGAGATCGGGATTTGTGGATTGCAACCAGGTTTTGGTCAAGGATTGACGTCGCAGCTGAGATCGGCCAGATCAAAACTTGGGCTGCACGACTGAGGCCTAACTTGAAGGGTACTTACGGCGTCCGCCAGTGCCCTATTAGGGCAGTGGCAGATCAGAGCATTACAGCAAGCGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.1

Weight (kDa)

8.83

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 330
AccB7I CCANNNNNTGG 1 cut(s) 312
AciI CCGC 1 cut(s) 403
AclWI GGATC 1 cut(s) 239
AcoI YGGCCR 1 cut(s) 343
AcyI GRCGYC 3 cut(s) 156, 327, 399
AfaI GTAC 1 cut(s) 391
AfeI AGCGCT 1 cut(s) 451
AfiI CCNNNNNNNGG 5 cut(s) 143, 199, 223, 312, 418
AgsI TTSAA 1 cut(s) 385
AjnI CCWGG 3 cut(s) 136, 165, 305
AloI GAACNNNNNNTCC 2 cut(s) 223, 255
AluBI AGCT 2 cut(s) 20, 335
AluI AGCT 2 cut(s) 20, 335
AlwI GGATC 1 cut(s) 239
Aor51HI AGCGCT 1 cut(s) 451
AoxI GGCC 3 cut(s) 163, 343, 374
ApeKI GCWGC 3 cut(s) 332, 362, 452
Asp700I GAANNNNTTC 1 cut(s) 66
AspLEI GCGC 1 cut(s) 452
BaeGI GKGCMC 1 cut(s) 413
BarI GAAGNNNNNNTAC 2 cut(s) 377, 409
BbvI GCAGC 3 cut(s) 344, 349, 439
BccI CCATC 3 cut(s) 191, 197, 225
BceAI ACGGC 2 cut(s) 143, 412
BciT130I CCWGG 3 cut(s) 138, 167, 307
BfmI CTRYAG 1 cut(s) 78
BfoI RGCGCY 1 cut(s) 453
BisI GCNGC 3 cut(s) 333, 363, 453
BlsI GCNGC 3 cut(s) 334, 364, 454
Bme1390I CCNGG 3 cut(s) 138, 167, 307
BmrFI CCNGG 3 cut(s) 138, 167, 307
BmrI ACTGGG 1 cut(s) 232
BmsI GCATC 1 cut(s) 122
BmuI ACTGGG 1 cut(s) 232
BpuEI CTTGAG 2 cut(s) 86, 159
BsaHI GRCGYC 3 cut(s) 156, 327, 399
BsaJI CCNNGG 1 cut(s) 136
Bsc4I CCNNNNNNNGG 5 cut(s) 143, 199, 223, 312, 418
Bse1I ACTGG 3 cut(s) 60, 227, 406
BseBI CCWGG 3 cut(s) 138, 167, 307
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 2 cut(s) 137, 189
BseLI CCNNNNNNNGG 5 cut(s) 143, 199, 223, 312, 418
BseMII CTCAG 2 cut(s) 327, 362
BseNI ACTGG 3 cut(s) 60, 227, 406
BseSI GKGCMC 1 cut(s) 413
BseXI GCAGC 3 cut(s) 344, 349, 439
BsgI GTGCAG 2 cut(s) 36, 348
BshFI GGCC 3 cut(s) 165, 345, 376
BslI CCNNNNNNNGG 5 cut(s) 143, 199, 223, 312, 418
BsnI GGCC 3 cut(s) 165, 345, 376
Bsp1286I GDGCHC 1 cut(s) 413
Bsp143I GATC 5 cut(s) 231, 283, 339, 348, 430
BspACI CCGC 1 cut(s) 403
BspANI GGCC 3 cut(s) 165, 345, 376
BspCNI CTCAG 2 cut(s) 328, 363
BspPI GGATC 1 cut(s) 239
BsrI ACTGG 3 cut(s) 60, 227, 406
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 5 cut(s) 231, 283, 339, 348, 430
BssNI GRCGYC 3 cut(s) 156, 327, 399
Bst2UI CCWGG 3 cut(s) 138, 167, 307
BstACI GRCGYC 3 cut(s) 156, 327, 399
BstAPI GCANNNNNTGC 1 cut(s) 452
BstC8I GCNNGC 2 cut(s) 22, 448
BstDEI CTNAG 2 cut(s) 336, 371
BstF5I GGATG 2 cut(s) 137, 189
BstH2I RGCGCY 1 cut(s) 453
BstHHI GCGC 1 cut(s) 452
BstKTI GATC 5 cut(s) 234, 286, 342, 351, 433
BstMBI GATC 5 cut(s) 231, 283, 339, 348, 430
BstMWI GCNNNNNNNGC 1 cut(s) 452
BstNI CCWGG 3 cut(s) 138, 167, 307
BstSCI CCNGG 3 cut(s) 136, 165, 305
BstSFI CTRYAG 1 cut(s) 78
BstSLI GKGCMC 1 cut(s) 413
BstV1I GCAGC 3 cut(s) 344, 349, 439
BsuRI GGCC 3 cut(s) 165, 345, 376
BtsCI GGATG 2 cut(s) 137, 189
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 4 cut(s) 53, 220, 413, 429
Cac8I GCNNGC 2 cut(s) 22, 448
CfoI GCGC 1 cut(s) 452
CseI GACGC 2 cut(s) 164, 388
CsiI ACCWGGT 1 cut(s) 305
Csp6I GTAC 1 cut(s) 390
CviAII CATG 2 cut(s) 113, 261
CviJI RGCY 8 cut(s) 20, 165, 170, 203, 335, 345, 362, 376
CviKI_1 RGCY 8 cut(s) 20, 165, 170, 203, 335, 345, 362, 376
CviQI GTAC 1 cut(s) 390
DdeI CTNAG 2 cut(s) 336, 371
DpnI GATC 5 cut(s) 233, 285, 341, 350, 432
DpnII GATC 5 cut(s) 231, 283, 339, 348, 430
EaeI YGGCCR 1 cut(s) 343
EciI GGCGGA 1 cut(s) 392
Eco147I AGGCCT 1 cut(s) 376
Eco47III AGCGCT 1 cut(s) 451
EcoRII CCWGG 3 cut(s) 136, 165, 305
FaeI CATG 2 cut(s) 116, 264
FaiI YATR 5 cut(s) 98, 114, 212, 214, 262
FalI AAGNNNNNCTT 3 cut(s) 51, 83, 439
FatI CATG 2 cut(s) 112, 260
Fnu4HI GCNGC 3 cut(s) 333, 363, 453
FokI GGATG 2 cut(s) 144, 176
Fsp4HI GCNGC 3 cut(s) 333, 363, 453
GlaI GCGC 1 cut(s) 451
GluI GCNGC 3 cut(s) 333, 363, 453
HaeII RGCGCY 1 cut(s) 453
HaeIII GGCC 3 cut(s) 165, 345, 376
HgaI GACGC 2 cut(s) 164, 388
HhaI GCGC 1 cut(s) 452
Hin1I GRCGYC 3 cut(s) 156, 327, 399
Hin1II CATG 2 cut(s) 116, 264
Hin6I GCGC 1 cut(s) 450
HinP1I GCGC 1 cut(s) 450
Hpy188I TCNGA 1 cut(s) 435
Hpy188III TCNNGA 3 cut(s) 176, 279, 287
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 1 cut(s) 379
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 3 cut(s) 53, 302, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 452
HpyF3I CTNAG 2 cut(s) 336, 371
HpySE526I ACGT 1 cut(s) 327
Hsp92I GRCGYC 3 cut(s) 156, 327, 399
Hsp92II CATG 2 cut(s) 116, 264
HspAI GCGC 1 cut(s) 450
Kzo9I GATC 5 cut(s) 231, 283, 339, 348, 430
Lsp1109I GCAGC 3 cut(s) 344, 349, 439
LweI GCATC 1 cut(s) 122
MabI ACCWGGT 1 cut(s) 305
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 2 cut(s) 46, 263
MalI GATC 5 cut(s) 233, 285, 341, 350, 432
MboI GATC 5 cut(s) 231, 283, 339, 348, 430
MboII GAAGA 1 cut(s) 71
MhlI GDGCHC 1 cut(s) 413
MluCI AATT 2 cut(s) 33, 126
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 3 cut(s) 76, 203, 366
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 3 cut(s) 6, 12, 457
MspA1I CMGCKG 1 cut(s) 335
MspR9I CCNGG 3 cut(s) 138, 167, 307
MvaI CCWGG 3 cut(s) 138, 167, 307
MwoI GCNNNNNNNGC 1 cut(s) 452
NdeII GATC 5 cut(s) 231, 283, 339, 348, 430
NlaIII CATG 2 cut(s) 116, 264
NmuCI GTSAC 1 cut(s) 263
PceI AGGCCT 1 cut(s) 376
PdmI GAANNNNTTC 1 cut(s) 66
PflMI CCANNNNNTGG 1 cut(s) 312
PkrI GCNGC 3 cut(s) 334, 364, 454
Psp6I CCWGG 3 cut(s) 136, 165, 305
PspGI CCWGG 3 cut(s) 136, 165, 305
PvuII CAGCTG 1 cut(s) 335
RsaI GTAC 1 cut(s) 391
RsaNI GTAC 1 cut(s) 390
SaqAI TTAA 3 cut(s) 6, 12, 457
SatI GCNGC 3 cut(s) 333, 363, 453
Sau3AI GATC 5 cut(s) 231, 283, 339, 348, 430
ScrFI CCNGG 3 cut(s) 138, 167, 307
SduI GDGCHC 1 cut(s) 413
SetI ASST 6 cut(s) 12, 22, 94, 311, 330, 337
SexAI ACCWGGT 1 cut(s) 305
SfaNI GCATC 1 cut(s) 122
SfcI CTRYAG 1 cut(s) 78
SmlI CTYRAG 2 cut(s) 101, 174
SmoI CTYRAG 2 cut(s) 101, 174
Sse9I AATT 2 cut(s) 33, 126
SseBI AGGCCT 1 cut(s) 376
SsiI CCGC 1 cut(s) 403
StuI AGGCCT 1 cut(s) 376
StyD4I CCNGG 3 cut(s) 136, 165, 305
TaiI ACGT 1 cut(s) 330
TaqI TCGA 1 cut(s) 195
TasI AATT 2 cut(s) 33, 126
Tru1I TTAA 3 cut(s) 6, 12, 457
Tru9I TTAA 3 cut(s) 6, 12, 457
TscAI CASTG 4 cut(s) 60, 227, 413, 429
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 3 cut(s) 332, 362, 452
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 1 cut(s) 199
TspRI CASTG 4 cut(s) 60, 227, 413, 429
Van91I CCANNNNNTGG 1 cut(s) 312
XmnI GAANNNNTTC 1 cut(s) 66
ZraI GACGTC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.