RchiOBHm_Chr3g0493471

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
40638198 .. 40640186
1989 bp
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UTR
Exon/CDS
Intron
PRQ45622

Sequence Viewer

Length: 159 bp
ATGTGCGTGAGGGGTTCTGTTGTTCTCTTGGACAGTGATGGTGCAGCTGCATTAGTGCTAGCGAGTGGGAAGAAGGCACTTGAATGCAATAGTGGCAGCATGTGTATTTTTTGGAATAATGATATCGTATCAGCTTTTGCTATCTTTCATTGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

5.45

Weight (kDa)

5.41

Isoelectric Point (pI)

16.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 83
AluBI AGCT 2 cut(s) 47, 134
AluI AGCT 2 cut(s) 47, 134
ApeKI GCWGC 3 cut(s) 44, 47, 96
AsuNHI GCTAGC 1 cut(s) 58
BbvI GCAGC 3 cut(s) 34, 56, 108
BccI CCATC 1 cut(s) 32
BfaI CTAG 1 cut(s) 59
BisI GCNGC 3 cut(s) 45, 48, 97
BlsI GCNGC 3 cut(s) 46, 49, 98
BmtI GCTAGC 1 cut(s) 62
BseXI GCAGC 3 cut(s) 34, 56, 108
BsgI GTGCAG 1 cut(s) 63
BsmI GAATGC 1 cut(s) 89
BspOI GCTAGC 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstNSI RCATGY 1 cut(s) 103
BstV1I GCAGC 3 cut(s) 34, 56, 108
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 60
CviAII CATG 1 cut(s) 100
CviJI RGCY 2 cut(s) 47, 134
CviKI_1 RGCY 2 cut(s) 47, 134
Eco32I GATATC 1 cut(s) 124
EcoRV GATATC 1 cut(s) 124
FaeI CATG 1 cut(s) 103
FaiI YATR 1 cut(s) 101
FatI CATG 1 cut(s) 99
Fnu4HI GCNGC 3 cut(s) 45, 48, 97
Fsp4HI GCNGC 3 cut(s) 45, 48, 97
FspBI CTAG 1 cut(s) 59
FspEI CC 7 cut(s) 14, 24, 51, 52, 59, 78, 97
GluI GCNGC 3 cut(s) 45, 48, 97
Hin1II CATG 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4V TGCA 3 cut(s) 44, 50, 87
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
Hsp92II CATG 1 cut(s) 103
Lsp1109I GCAGC 3 cut(s) 34, 56, 108
MaeI CTAG 1 cut(s) 59
MboII GAAGA 1 cut(s) 82
MluCI AATT 1 cut(s) 154
MnlI CCTC 1 cut(s) 3
MslI CAYNNNNRTG 1 cut(s) 82
MspA1I CMGCKG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 93
NheI GCTAGC 1 cut(s) 58
NlaIII CATG 1 cut(s) 103
NspI RCATGY 1 cut(s) 103
PctI GAATGC 1 cut(s) 89
PkrI GCNGC 3 cut(s) 46, 49, 98
PvuII CAGCTG 1 cut(s) 47
RseI CAYNNNNRTG 1 cut(s) 82
SatI GCNGC 3 cut(s) 45, 48, 97
SetI ASST 2 cut(s) 49, 136
SgeI CNNG 6 cut(s) 19, 40, 71, 75, 92, 112
SmiMI CAYNNNNRTG 1 cut(s) 82
Sse9I AATT 1 cut(s) 154
SspMI CTAG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 35
TasI AATT 1 cut(s) 154
TscAI CASTG 1 cut(s) 40
TseI GCWGC 3 cut(s) 44, 47, 96
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 1 cut(s) 40
XceI RCATGY 1 cut(s) 103
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.