Rh3CG150100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
12497003 .. 12504999
7997 bp
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UTR
Exon/CDS
Intron
Rh3CG150100.1

Sequence Viewer

Length: 426 bp
ATGATACAAGCGGTGATGGTGATAAAATACTCAGGGCAAGCCTCGCCTTGCCAAGTTTTACGAATTTCAGCCTGTGGAGAAGTAACAGGAGCTAATACGCAGTTGAGGAAGAGAGTTTTGAGTAGTAGAGCTGAGAAGTCCAGCAATTTTCTGGATGCGGAGTATATTTTTGGATACTCAGCTTGTGTACAAGTATTTAAGTGGGCTGGTGTTAAGGCTTGCAAGACCCGAATTGCTAAAAGAGTAACTGCACTGGAAGAACTGCTTCCACAATCTGTAGAGGAAACACCTGCTATAGTCAAGTCCTACTATGACAATAGAATAATTAGATGCCTTAGTGGTGTTGAAGGAGTTCGTAACGGGAAAGCAAAAAAACAATATATTTACCCTTCTTTCTTGCTACCCCTAATTCGACATATAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.7

Weight (kDa)

9.68

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 298
Acc36I ACCTGC 1 cut(s) 298
AciI CCGC 2 cut(s) 11, 158
AcsI RAATTY 1 cut(s) 63
AfaI GTAC 1 cut(s) 189
AgsI TTSAA 1 cut(s) 347
AluBI AGCT 4 cut(s) 92, 131, 182, 422
AluI AGCT 4 cut(s) 92, 131, 182, 422
ApoI RAATTY 1 cut(s) 63
Asp700I GAANNNNTTC 2 cut(s) 264, 351
AsuHPI GGTGA 2 cut(s) 25, 31
BccI CCATC 1 cut(s) 10
BciVI GTATCC 1 cut(s) 167
BfmI CTRYAG 2 cut(s) 276, 294
BfuAI ACCTGC 1 cut(s) 298
BfuI GTATCC 1 cut(s) 167
BmsI GCATC 2 cut(s) 145, 320
Bse1I ACTGG 1 cut(s) 258
BseGI GGATG 1 cut(s) 160
BseMII CTCAG 3 cut(s) 45, 123, 192
BseNI ACTGG 1 cut(s) 258
BsgI GTGCAG 1 cut(s) 234
Bsp1407I TGTACA 1 cut(s) 187
BspACI CCGC 2 cut(s) 11, 158
BspCNI CTCAG 3 cut(s) 44, 124, 191
BspMI ACCTGC 1 cut(s) 298
BsrGI TGTACA 1 cut(s) 187
BsrI ACTGG 1 cut(s) 258
Bst6I CTCTTC 1 cut(s) 104
BstAUI TGTACA 1 cut(s) 187
BstC8I GCNNGC 2 cut(s) 39, 220
BstDEI CTNAG 4 cut(s) 31, 132, 178, 335
BstF5I GGATG 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstSFI CTRYAG 2 cut(s) 276, 294
BsuI GTATCC 1 cut(s) 167
BtsCI GGATG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 251
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 2 cut(s) 39, 220
Csp6I GTAC 1 cut(s) 188
CviJI RGCY 8 cut(s) 41, 71, 92, 131, 182, 206, 218, 422
CviKI_1 RGCY 8 cut(s) 41, 71, 92, 131, 182, 206, 218, 422
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 4 cut(s) 31, 132, 178, 335
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
FaiI YATR 6 cut(s) 165, 296, 312, 381, 417, 419
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FokI GGATG 1 cut(s) 167
HphI GGTGA 2 cut(s) 25, 31
Hpy166II GTNNAC 1 cut(s) 188
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 1 cut(s) 188
HpyAV CCTTC 2 cut(s) 341, 399
HpyCH4V TGCA 2 cut(s) 222, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 4 cut(s) 31, 132, 178, 335
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 8 cut(s) 18, 72, 85, 137, 154, 192, 239, 303
LweI GCATC 2 cut(s) 145, 320
MaeIII GTNAC 3 cut(s) 82, 244, 356
MboII GAAGA 2 cut(s) 121, 269
MluCI AATT 5 cut(s) 63, 145, 231, 324, 408
MnlI CCTC 3 cut(s) 52, 99, 274
MroXI GAANNNNTTC 2 cut(s) 264, 351
MseI TTAA 2 cut(s) 198, 213
MwoI GCNNNNNNNGC 1 cut(s) 43
PaqCI CACCTGC 1 cut(s) 298
PdmI GAANNNNTTC 2 cut(s) 264, 351
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 198, 213
SetI ASST 5 cut(s) 94, 133, 184, 292, 424
SfaNI GCATC 2 cut(s) 145, 320
SfcI CTRYAG 2 cut(s) 276, 294
Sse9I AATT 5 cut(s) 63, 145, 231, 324, 408
SsiI CCGC 2 cut(s) 11, 158
TaqI TCGA 1 cut(s) 412
TasI AATT 5 cut(s) 63, 145, 231, 324, 408
TatI WGTACW 1 cut(s) 187
Tru1I TTAA 2 cut(s) 198, 213
Tru9I TTAA 2 cut(s) 198, 213
TscAI CASTG 1 cut(s) 258
TspRI CASTG 1 cut(s) 258
XapI RAATTY 1 cut(s) 63
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XmnI GAANNNNTTC 2 cut(s) 264, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.