Rh4AG021900

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0016403
Physical Location & Seq
Forward (+)
4110774 .. 4118506
7733 bp
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UTR
Exon/CDS
Intron
Rh4AG021900.1

Sequence Viewer

Length: 273 bp
ATGGTGACCAAAAAAGATGATGAGAGTGAAGATGCCCAGTTGAAATTAGTGAAAGAAAAGATGGGAGAGACAGCGATAGCAGCTAGGAGAAGATCTGAGACTACTCCTGAGCTGGACAAGCACAATAACCAGGAAACACCTGGTATAGTCAAGTACTACTATGACAAAAGAATAATTGGATGCCCTAGTGTTGAAGGAGATGAGCACGATGCTATGTGGTTTTGGCTGGATAAAGGCAAGTCACATGAACGCCCTATCTATGTTATCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

90

Amino Acids

10.47

Weight (kDa)

5.59

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX5B PF01215 41 - 81 8.4e-07 Cytochrome c oxidase subunit Vb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 155
AgsI TTSAA 2 cut(s) 43, 194
AjnI CCWGG 2 cut(s) 129, 139
AluBI AGCT 2 cut(s) 83, 112
AluI AGCT 2 cut(s) 83, 112
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 2 cut(s) 62, 92
ApeKI GCWGC 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 92
BccI CCATC 1 cut(s) 55
BciT130I CCWGG 2 cut(s) 131, 141
BcoDI GTCTC 2 cut(s) 62, 92
BfaI CTAG 2 cut(s) 84, 186
BglII AGATCT 1 cut(s) 92
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BmcAI AGTACT 1 cut(s) 155
Bme1390I CCNGG 2 cut(s) 131, 141
BmrFI CCNGG 2 cut(s) 131, 141
BmrI ACTGGG 1 cut(s) 31
BmsI GCATC 3 cut(s) 22, 170, 199
BmuI ACTGGG 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 37
BseBI CCWGG 2 cut(s) 131, 141
BseGI GGATG 1 cut(s) 185
BseMII CTCAG 2 cut(s) 87, 99
BseNI ACTGG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 207
BsmAI GTCTC 2 cut(s) 62, 92
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 92
BspCNI CTCAG 2 cut(s) 88, 100
BsrI ACTGG 1 cut(s) 37
BssMI GATC 1 cut(s) 92
Bst2UI CCWGG 2 cut(s) 131, 141
BstDEI CTNAG 2 cut(s) 96, 108
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 1 cut(s) 185
BstKTI GATC 1 cut(s) 95
BstMAI GTCTC 2 cut(s) 62, 92
BstMBI GATC 1 cut(s) 92
BstMWI GCNNNNNNNGC 2 cut(s) 80, 118
BstNI CCWGG 2 cut(s) 131, 141
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 2 cut(s) 129, 139
BstV1I GCAGC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BtsCI GGATG 1 cut(s) 185
CsiI ACCWGGT 1 cut(s) 139
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 245
CviJI RGCY 3 cut(s) 83, 112, 226
CviKI_1 RGCY 3 cut(s) 83, 112, 226
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 2 cut(s) 96, 108
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 129, 139
FaeI CATG 1 cut(s) 248
FaiI YATR 5 cut(s) 146, 162, 215, 246, 261
FatI CATG 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 2 cut(s) 84, 186
GluI GCNGC 1 cut(s) 81
Hin1II CATG 1 cut(s) 248
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 118
HpyF3I CTNAG 2 cut(s) 96, 108
Hsp92II CATG 1 cut(s) 248
Kzo9I GATC 1 cut(s) 92
LpnPI CCDG 8 cut(s) 50, 98, 116, 120, 126, 143, 153, 212
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 3 cut(s) 22, 170, 199
MabI ACCWGGT 1 cut(s) 139
MaeI CTAG 2 cut(s) 84, 186
MaeIII GTNAC 2 cut(s) 4, 240
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MboII GAAGA 2 cut(s) 41, 102
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 2 cut(s) 44, 174
MspR9I CCNGG 2 cut(s) 131, 141
MvaI CCWGG 2 cut(s) 131, 141
MwoI GCNNNNNNNGC 2 cut(s) 80, 118
NdeII GATC 1 cut(s) 92
NlaIII CATG 1 cut(s) 248
NmuCI GTSAC 2 cut(s) 4, 240
PkrI GCNGC 1 cut(s) 82
Psp6I CCWGG 2 cut(s) 129, 139
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 2 cut(s) 129, 139
PsuI RGATCY 1 cut(s) 92
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 92
ScaI AGTACT 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 131, 141
SduI GDGCHC 1 cut(s) 207
SetI ASST 3 cut(s) 85, 114, 142
SexAI ACCWGGT 1 cut(s) 139
SfaNI GCATC 3 cut(s) 22, 170, 199
Sse9I AATT 2 cut(s) 44, 174
SspMI CTAG 2 cut(s) 84, 186
StyD4I CCNGG 2 cut(s) 129, 139
TasI AATT 2 cut(s) 44, 174
TatI WGTACW 1 cut(s) 153
TseFI GTSAC 2 cut(s) 4, 240
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 2 cut(s) 4, 240
TspDTI ATGAA 1 cut(s) 261
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XspI CTAG 2 cut(s) 84, 186
ZrmI AGTACT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.