Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0013696

Physical Location & Seq

Genomic Coordinates Forward (+)

2023841 .. 2024413

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1021800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCTAAAAAAATGTTGCTGCTGTTTCTGCATCATTGTTGTAGCACTCGGTGCCCTCAGCTTAACGGCTTGTTTCGCGGTTCGTCAATTCAGCCCTTCTAAACCGATAATTTACCAGGTCACCGATGCTTCTCTGACGCAATTCAACCTGACGGCAACCAACAACACCATCCTATACAATCTGTCCCTCAACATGACTGTTCAAAACCGTAACAAATGGAATGACTTCCACTATGAACATTTTGAAGCCGTTCCTAGTTATAAGAACCAGGATTTGAGTAAAAGTATTTTGGAACCATTCGGGGTAGCGCACAGGGATACGTACGATTTGTATCCATTGTTCAAAGGACTACGTCCGGTGACGGCTCTTACGAATGAGGAGGCTTCAAATTTTAGGAATAGTACAGTTTTTGATATCACGTTGAAGATCTATTTTAAGTATTGGACCAAAATTGCTGTGTACAAGGATGAGAAGGAGCTCCAGATGGCTTGCTATTTGAAGGTTCCATTGAGTTCTACCGGAAAACTAGCTGAAAATTTTCAGAGCACCAAATGTGATAAGGCCAACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

191

Amino Acids

21.76

Weight (kDa)

8.72

Isoelectric Point (pI)

27.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013696)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10090
malus_domestica	MD12G1035100.v1.1 MD14G1021800.v1.1 MD14G1021900.v1.1
prunus_persica	Prupe.6G291900_v2.0.a1 Prupe.7G111700_v2.0.a1 Prupe.7G111800_v2.0.a1
pyrus_communis	pycom14g02100
rosa_chinensis	RchiOBHm_Chr3g0460791
rosa_laevigata	RLG00000024981
rosa_multiflora	Rmu_sc0007678.1_g000020
rosa_roxburghii	Rroxscaffold_6G00419220
rosa_rugosa	Rorug03G0046500
rosa_samantha	Rh3AG103400 Rh3BG107100 Rh3CG109000 Rh3DG108900
rosa_wichuraiana	Rw3G008800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	50
AccII	CGCG	1 cut(s)	77
AciI	CCGC	1 cut(s)	77
AcsI	RAATTY	2 cut(s)	388, 535
AdeI	CACNNNGTG	1 cut(s)	50
AfaI	GTAC	3 cut(s)	323, 403, 461
AgsI	TTSAA	7 cut(s)	145, 203, 245, 343, 387, 424, 499
AjnI	CCWGG	2 cut(s)	114, 267
AluBI	AGCT	3 cut(s)	60, 478, 530
AluI	AGCT	3 cut(s)	60, 478, 530
Alw21I	GWGCWC	2 cut(s)	480, 548
AoxI	GGCC	1 cut(s)	561
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	2 cut(s)	388, 535
Asp700I	GAANNNNTTC	3 cut(s)	224, 249, 537
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	444
AsuHPI	GGTGA	2 cut(s)	112, 370
AvaII	GGWCC	1 cut(s)	444
BaeGI	GKGCMC	1 cut(s)	55
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	480
Bbv12I	GWGCWC	2 cut(s)	480, 548
BbvCI	CCTCAGC	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	5
BccI	CCATC	2 cut(s)	176, 478
BceAI	ACGGC	4 cut(s)	81, 168, 233, 378
BciT130I	CCWGG	2 cut(s)	116, 269
BciVI	GTATCC	2 cut(s)	310, 342
BfaI	CTAG	2 cut(s)	255, 527
BfuI	GTATCC	2 cut(s)	310, 342
BglII	AGATCT	1 cut(s)	426
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	2 cut(s)	116, 269
Bme18I	GGWCC	1 cut(s)	444
BmgT120I	GGNCC	1 cut(s)	444
BmiI	GGNNCC	3 cut(s)	52, 294, 504
BmrFI	CCNGG	2 cut(s)	116, 269
BmsI	GCATC	2 cut(s)	39, 115
BpmI	CTGGAG	1 cut(s)	464
Bpu10I	CCTNAGC	1 cut(s)	56
BsaAI	YACGTR	1 cut(s)	321
BsaBI	GATNNNNATC	1 cut(s)	330
BsaWI	WCCGGW	2 cut(s)	355, 518
Bse8I	GATNNNNATC	1 cut(s)	330
BseBI	CCWGG	2 cut(s)	116, 269
BseGI	GGATG	2 cut(s)	168, 472
BseJI	GATNNNNATC	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	392
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	563
BshNI	GGYRCC	1 cut(s)	50
BsiHKAI	GWGCWC	2 cut(s)	480, 548
BsiSI	CCGG	2 cut(s)	356, 519
BsiWI	CGTACG	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	563
Bsp1286I	GDGCHC	3 cut(s)	55, 480, 548
Bsp1407I	TGTACA	1 cut(s)	459
Bsp143I	GATC	1 cut(s)	426
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	563
BspCNI	CTCAG	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	3 cut(s)	52, 294, 504
BspT107I	GGYRCC	1 cut(s)	50
BsrGI	TGTACA	1 cut(s)	459
BssMI	GATC	1 cut(s)	426
Bst2UI	CCWGG	2 cut(s)	116, 269
Bst4CI	ACNGT	3 cut(s)	199, 209, 406
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	459
BstBAI	YACGTR	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	1 cut(s)	56
BstEII	GGTNACC	1 cut(s)	118
BstF5I	GGATG	2 cut(s)	168, 472
BstFNI	CGCG	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	1 cut(s)	429
BstMBI	GATC	1 cut(s)	426
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 50, 74
BstNI	CCWGG	2 cut(s)	116, 269
BstPI	GGTNACC	1 cut(s)	118
BstSCI	CCNGG	2 cut(s)	114, 267
BstSLI	GKGCMC	1 cut(s)	55
BstSNI	TACGTA	1 cut(s)	321
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	5
BstX2I	RGATCY	1 cut(s)	426
BstYI	RGATCY	1 cut(s)	426
BsuI	GTATCC	2 cut(s)	310, 342
BsuRI	GGCC	1 cut(s)	563
BtsCI	GGATG	2 cut(s)	168, 472
Cac8I	GCNNGC	1 cut(s)	490
CfoI	GCGC	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	444
CseI	GACGC	1 cut(s)	145
CsiI	ACCWGGT	1 cut(s)	114
Csp6I	GTAC	3 cut(s)	322, 402, 460
CviAII	CATG	1 cut(s)	193
CviQI	GTAC	3 cut(s)	322, 402, 460
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	1 cut(s)	428
DpnII	GATC	1 cut(s)	426
DraIII	CACNNNGTG	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	478
Eco105I	TACGTA	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	480
Eco32I	GATATC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	478
Eco91I	GGTNACC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	478
EcoO65I	GGTNACC	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	114, 267
EcoRV	GATATC	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	480
FaeI	CATG	1 cut(s)	196
FaiI	YATR	4 cut(s)	175, 194, 234, 261
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	2 cut(s)	155, 479
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	2 cut(s)	255, 527
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	464
HaeIII	GGCC	1 cut(s)	563
HapII	CCGG	2 cut(s)	356, 519
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HpaII	CCGG	2 cut(s)	356, 519
HphI	GGTGA	2 cut(s)	112, 370
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	2 cut(s)	135, 543
Hpy188III	TCNNGA	1 cut(s)	481
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	3 cut(s)	105, 466, 493
HpyCH4III	ACNGT	3 cut(s)	199, 209, 406
HpyCH4IV	ACGT	3 cut(s)	320, 352, 419
HpyCH4V	TGCA	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 50, 74
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	3 cut(s)	320, 352, 419
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	1 cut(s)	426
LmnI	GCTCC	2 cut(s)	475, 483
LpnPI	CCDG	9 cut(s)	101, 128, 161, 254, 281, 298, 369, 494, 532
Lsp1109I	GCAGC	1 cut(s)	5
LweI	GCATC	2 cut(s)	39, 115
MabI	ACCWGGT	1 cut(s)	114
MaeI	CTAG	2 cut(s)	255, 527
MaeII	ACGT	3 cut(s)	320, 352, 419
MaeIII	GTNAC	3 cut(s)	118, 209, 358
MalI	GATC	1 cut(s)	428
MboI	GATC	1 cut(s)	426
MboII	GAAGA	1 cut(s)	436
MflI	RGATCY	1 cut(s)	426
MhlI	GDGCHC	3 cut(s)	55, 480, 548
MluCI	AATT	6 cut(s)	86, 108, 140, 388, 450, 535
MnlI	CCTC	4 cut(s)	65, 197, 370, 373
MroXI	GAANNNNTTC	3 cut(s)	224, 249, 537
MseI	TTAA	2 cut(s)	62, 435
MspI	CCGG	2 cut(s)	356, 519
MspR9I	CCNGG	2 cut(s)	116, 269
MvaI	CCWGG	2 cut(s)	116, 269
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	27, 50, 74
NdeII	GATC	1 cut(s)	426
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	3 cut(s)	52, 294, 504
NmuCI	GTSAC	2 cut(s)	118, 358
PcsI	WCGNNNNNNNCGW	1 cut(s)	368
PdmI	GAANNNNTTC	3 cut(s)	224, 249, 537
Pfl23II	CGTACG	1 cut(s)	321
PflFI	GACNNNGTC	1 cut(s)	351
PkrI	GCNGC	1 cut(s)	20
Ppu21I	YACGTR	1 cut(s)	321
PsiI	TTATAA	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	480
Psp6I	CCWGG	2 cut(s)	114, 267
PspEI	GGTNACC	1 cut(s)	118
PspGI	CCWGG	2 cut(s)	114, 267
PspLI	CGTACG	1 cut(s)	321
PspN4I	GGNNCC	3 cut(s)	52, 294, 504
PspPI	GGNCC	1 cut(s)	444
PsrI	GAACNNNNNNTAC	2 cut(s)	323, 355
PsuI	RGATCY	1 cut(s)	426
PsyI	GACNNNGTC	1 cut(s)	351
RsaI	GTAC	3 cut(s)	323, 403, 461
RsaNI	GTAC	3 cut(s)	322, 402, 460
SacI	GAGCTC	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	62, 435
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	1 cut(s)	426
Sau96I	GGNCC	1 cut(s)	444
ScrFI	CCNGG	2 cut(s)	116, 269
SduI	GDGCHC	3 cut(s)	55, 480, 548
SetI	ASST	9 cut(s)	62, 120, 150, 323, 355, 422, 480, 504, 532
SexAI	ACCWGGT	1 cut(s)	114
SfaNI	GCATC	2 cut(s)	39, 115
SinI	GGWCC	1 cut(s)	444
SnaBI	TACGTA	1 cut(s)	321
Sse9I	AATT	6 cut(s)	86, 108, 140, 388, 450, 535
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	2 cut(s)	255, 527
SstI	GAGCTC	1 cut(s)	480
StyD4I	CCNGG	2 cut(s)	114, 267
TaaI	ACNGT	3 cut(s)	199, 209, 406
TaiI	ACGT	3 cut(s)	323, 355, 422
TasI	AATT	6 cut(s)	86, 108, 140, 388, 450, 535
TatI	WGTACW	2 cut(s)	401, 459
Tru1I	TTAA	2 cut(s)	62, 435
Tru9I	TTAA	2 cut(s)	62, 435
TseFI	GTSAC	2 cut(s)	118, 358
TseI	GCWGC	1 cut(s)	18
Tsp45I	GTSAC	2 cut(s)	118, 358
TspDTI	ATGAA	1 cut(s)	249
Tth111I	GACNNNGTC	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	444
XapI	RAATTY	2 cut(s)	388, 535
XmnI	GAANNNNTTC	3 cut(s)	224, 249, 537
XspI	CTAG	2 cut(s)	255, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.