Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0013696

Physical Location & Seq

Genomic Coordinates Reverse (-)

40732596 .. 40733096

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00419220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCATAATGCGCTGGTCCATTATGAGGTCACTGATGCCTCCCTGACCAAGTTCGACCTCACCGCCAATAACACCTTCCTCGACTACAACCTTACCCTCAAACTAAACCTTGAAAACCGTAGCCCCTTGGATTACAACTTCGACCTATTGGAGGCCGTGCCGGTTTTCAAGAGCCAAAACCTAAATGACATGACCAATCTTTCGAAGCCTTTCTACCTAGAACACAAGACCAATGTGACATTCCCGGCATTGTTTGCCGGGAACAACTCGGTGGCCCTCGGGGCTCAGGAGGCTTTTGATTTCGGGAAAGCTGATGTCTTTGATATTGTTTTGAAGATTAACAGTGAGTATTGGGCTAAGAGTGATTCGAAGAAGGTTAGTCTTAAGCAGGAGATGGCATGCTACTTGAAGGTCCCTCTGAATTCCAACGGAACAAATGCTGGTGAGAGTTTTCAGATTACTAAGTGCGAGAAAACTGAACTCGACATTAACAAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

166

Amino Acids

18.72

Weight (kDa)

5.05

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013696)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10090
malus_domestica	MD12G1035100.v1.1 MD14G1021800.v1.1 MD14G1021900.v1.1
prunus_persica	Prupe.6G291900_v2.0.a1 Prupe.7G111700_v2.0.a1 Prupe.7G111800_v2.0.a1
pyrus_communis	pycom14g02100
rosa_chinensis	RchiOBHm_Chr3g0460791
rosa_laevigata	RLG00000024981
rosa_multiflora	Rmu_sc0007678.1_g000020
rosa_roxburghii	Rroxscaffold_6G00419220
rosa_rugosa	Rorug03G0046500
rosa_samantha	Rh3AG103400 Rh3BG107100 Rh3CG109000 Rh3DG108900
rosa_wichuraiana	Rw3G008800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	421
AfiI	CCNNNNNNNGG	2 cut(s)	25, 151
AflII	CTTAAG	1 cut(s)	383
AgsI	TTSAA	4 cut(s)	113, 169, 334, 409
AjuI	GAANNNNNNNTTGG	4 cut(s)	59, 91, 224, 256
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	2 cut(s)	153, 273
ApoI	RAATTY	1 cut(s)	421
ArsI	GACNNNNNNTTYG	2 cut(s)	184, 216
Asp700I	GAANNNNTTC	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	3 cut(s)	16, 274, 412
AsuC2I	CCSGG	2 cut(s)	245, 259
AsuHPI	GGTGA	2 cut(s)	52, 455
AsuII	TTCGAA	2 cut(s)	203, 368
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	2 cut(s)	16, 412
BanII	GRGCYC	1 cut(s)	286
BarI	GAAGNNNNNNTAC	2 cut(s)	197, 229
BccI	CCATC	1 cut(s)	388
BceAI	ACGGC	1 cut(s)	140
BcnI	CCSGG	2 cut(s)	245, 259
BfaI	CTAG	2 cut(s)	218, 499
BfrI	CTTAAG	1 cut(s)	383
BglI	GCCNNNNNGGC	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	245, 259
Bme18I	GGWCC	2 cut(s)	16, 412
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	3 cut(s)	16, 274, 412
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	2 cut(s)	245, 259
BmsI	GCATC	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	285
Bpu14I	TTCGAA	2 cut(s)	203, 368
BpuMI	CCSGG	2 cut(s)	245, 259
BsaJI	CCNNGG	2 cut(s)	126, 277
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 151
Bse118I	RCCGGY	1 cut(s)	160
BseDI	CCNNGG	2 cut(s)	126, 277
BseLI	CCNNNNNNNGG	2 cut(s)	25, 151
BseMII	CTCAG	1 cut(s)	299
BshFI	GGCC	2 cut(s)	155, 275
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	3 cut(s)	161, 245, 258
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	2 cut(s)	25, 151
BsmFI	GGGAC	1 cut(s)	398
BsnI	GGCC	2 cut(s)	155, 275
BsoBI	CYCGRG	1 cut(s)	278
Bsp119I	TTCGAA	2 cut(s)	203, 368
Bsp1286I	GDGCHC	1 cut(s)	286
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	2 cut(s)	155, 275
BspCNI	CTCAG	1 cut(s)	298
BspLI	GGNNCC	1 cut(s)	414
BspT104I	TTCGAA	2 cut(s)	203, 368
BspTI	CTTAAG	1 cut(s)	383
BsrFI	RCCGGY	1 cut(s)	160
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	2 cut(s)	126, 277
BssT1I	CCWWGG	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	119, 344
BstAFI	CTTAAG	1 cut(s)	383
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstBI	TTCGAA	2 cut(s)	203, 368
BstC8I	GCNNGC	1 cut(s)	400
BstDEI	CTNAG	3 cut(s)	285, 357, 462
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 254, 281, 290
BstNSI	RCATGY	1 cut(s)	402
BstSCI	CCNGG	2 cut(s)	243, 257
BsuRI	GGCC	2 cut(s)	155, 275
BtsIMutI	CAGTG	2 cut(s)	30, 349
Cac8I	GCNNGC	1 cut(s)	400
CfoI	GCGC	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	3 cut(s)	16, 274, 412
CviAII	CATG	2 cut(s)	190, 399
CviJI	RGCY	9 cut(s)	123, 155, 174, 208, 275, 284, 293, 311, 356
CviKI_1	RGCY	9 cut(s)	123, 155, 174, 208, 275, 284, 293, 311, 356
DdeI	CTNAG	3 cut(s)	285, 357, 462
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	286
Eco47I	GGWCC	2 cut(s)	16, 412
Eco88I	CYCGRG	1 cut(s)	278
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	412
EcoRI	GAATTC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	126
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	2 cut(s)	193, 402
FaiI	YATR	4 cut(s)	6, 24, 191, 400
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	2 cut(s)	189, 398
FriOI	GRGCYC	1 cut(s)	286
FspBI	CTAG	2 cut(s)	218, 499
GlaI	GCGC	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	155, 275
HapII	CCGG	3 cut(s)	161, 245, 258
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	2 cut(s)	193, 402
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	3 cut(s)	161, 245, 258
HphI	GGTGA	2 cut(s)	52, 455
Hpy188I	TCNGA	2 cut(s)	420, 456
Hpy188III	TCNNGA	3 cut(s)	169, 287, 304
HpyAV	CCTTC	3 cut(s)	85, 367, 403
HpyCH4III	ACNGT	2 cut(s)	119, 344
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 254, 281, 290
HpyF3I	CTNAG	3 cut(s)	285, 357, 462
Hsp92II	CATG	2 cut(s)	193, 402
HspAI	GCGC	1 cut(s)	11
LpnPI	CCDG	7 cut(s)	56, 174, 258, 271, 272, 374, 426
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	2 cut(s)	218, 499
MaeIII	GTNAC	2 cut(s)	28, 235
MboII	GAAGA	2 cut(s)	346, 382
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	1 cut(s)	421
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	9 cut(s)	19, 49, 68, 89, 107, 145, 283, 287, 426
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	3 cut(s)	339, 384, 489
MspCI	CTTAAG	1 cut(s)	383
MspI	CCGG	3 cut(s)	161, 245, 258
MspR9I	CCNGG	2 cut(s)	245, 259
MwoI	GCNNNNNNNGC	4 cut(s)	10, 254, 281, 290
NciI	CCSGG	2 cut(s)	245, 259
NlaIII	CATG	2 cut(s)	193, 402
NlaIV	GGNNCC	1 cut(s)	414
NmuCI	GTSAC	2 cut(s)	28, 235
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	402
NspV	TTCGAA	2 cut(s)	203, 368
PaeI	GCATGC	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	365
PpuMI	RGGWCCY	1 cut(s)	412
Psp5II	RGGWCCY	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	3 cut(s)	16, 274, 412
PspPPI	RGGWCCY	1 cut(s)	412
SaqAI	TTAA	3 cut(s)	339, 384, 489
Sau96I	GGNCC	3 cut(s)	16, 274, 412
ScrFI	CCNGG	2 cut(s)	245, 259
SduI	GDGCHC	1 cut(s)	286
SfaNI	GCATC	1 cut(s)	25
SfuI	TTCGAA	2 cut(s)	203, 368
SinI	GGWCC	2 cut(s)	16, 412
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
SphI	GCATGC	1 cut(s)	402
Sse9I	AATT	1 cut(s)	421
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	2 cut(s)	218, 499
StyD4I	CCNGG	2 cut(s)	243, 257
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	119, 344
TaqI	TCGA	6 cut(s)	54, 81, 141, 203, 368, 483
TasI	AATT	1 cut(s)	421
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	3 cut(s)	339, 384, 489
Tru9I	TTAA	3 cut(s)	339, 384, 489
TscAI	CASTG	2 cut(s)	37, 349
TseFI	GTSAC	2 cut(s)	28, 235
Tsp45I	GTSAC	2 cut(s)	28, 235
TspGWI	ACGGA	1 cut(s)	444
TspRI	CASTG	2 cut(s)	37, 349
Vha464I	CTTAAG	1 cut(s)	383
VpaK11BI	GGWCC	2 cut(s)	16, 412
XagI	CCTNNNNNAGG	1 cut(s)	149
XapI	RAATTY	1 cut(s)	421
XceI	RCATGY	1 cut(s)	402
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	2 cut(s)	218, 499
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.