Prupe.7G111800_v2.0.a1

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013696
Physical Location & Seq
Reverse (-)
13851039 .. 13851602
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G111800.1

Sequence Viewer

Length: 564 bp
ATGCTAAAAAAAATTTGCTGCTGTTGCTGCATCATTGTTGTAGTACTTGGTGCCCTCAGCGGCACAGGTTGGTTCGTTATCCGGCAATTCAGCCCCTCGAAATCGGTCATCTACAAGGTCACCGATGCCTCGCTGACCCGATTCAACCTGACTGCGGCCAACAACACCATCCAATACAATCTATCCCTCAACATGACTGTTGAAAACCCTAACAAATGGAATGACTTCCACTACGAAAATTTTGGAGCCGTTGCTAGTTATAAGAACCAGGATTTGAGTAATAGTAGCTTGGCCCCCTTCCGCGTAGGGAACAAGAATTCGTTTGTGTTGACTCCATCGTTCGAGGGGCAACGACTGGTGGCTCTTTCGAATGATGAGGTTTCGAATTTTAGGAATTCTACAGTTTTCGATATCGTTTTGAAGCTCTATTTTAAGTATTGGACCAAGATTGGTGCGGTCAAGATTAACAAGGAGCTCCAAATGGCTTGCTATTTCGAGGTTCCATTGAGTTCTGGCGGAAAATCAGGTGAAAAATTTGATAGCACCAAGTGTGATAAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

188

Amino Acids

20.92

Weight (kDa)

9.05

Isoelectric Point (pI)

22.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 50
AccII CGCG 1 cut(s) 303
AciI CCGC 5 cut(s) 60, 155, 301, 455, 516
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 6 cut(s) 12, 238, 316, 385, 394, 533
AdeI CACNNNGTG 1 cut(s) 549
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 3 cut(s) 145, 203, 421
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 3 cut(s) 288, 424, 475
AluI AGCT 3 cut(s) 288, 424, 475
Alw21I GWGCWC 1 cut(s) 477
AoxI GGCC 2 cut(s) 156, 291
ApeKI GCWGC 2 cut(s) 18, 27
ApoI RAATTY 6 cut(s) 12, 238, 316, 385, 394, 533
Asp700I GAANNNNTTC 1 cut(s) 224
AspS9I GGNCC 2 cut(s) 292, 441
AsuHPI GGTGA 2 cut(s) 112, 539
AsuII TTCGAA 2 cut(s) 368, 383
AvaII GGWCC 1 cut(s) 441
BaeGI GKGCMC 1 cut(s) 55
BanI GGYRCC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 477
Bbv12I GWGCWC 1 cut(s) 477
BbvCI CCTCAGC 1 cut(s) 56
BbvI GCAGC 2 cut(s) 5, 14
BccI CCATC 2 cut(s) 176, 343
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 269
BfaI CTAG 1 cut(s) 255
BfmI CTRYAG 1 cut(s) 399
BisI GCNGC 4 cut(s) 19, 28, 61, 156
BlsI GCNGC 4 cut(s) 20, 29, 62, 157
BmcAI AGTACT 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 269
Bme18I GGWCC 1 cut(s) 441
BmgT120I GGNCC 2 cut(s) 292, 441
BmiI GGNNCC 4 cut(s) 52, 247, 294, 501
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 2 cut(s) 39, 115
Bpu10I CCTNAGC 1 cut(s) 56
Bpu14I TTCGAA 2 cut(s) 368, 383
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 360
BseBI CCWGG 1 cut(s) 269
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 360
BseSI GKGCMC 1 cut(s) 55
BseXI GCAGC 2 cut(s) 5, 14
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 2 cut(s) 158, 293
BshNI GGYRCC 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 477
BsiSI CCGG 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 154
BsnI GGCC 2 cut(s) 158, 293
Bsp119I TTCGAA 2 cut(s) 368, 383
Bsp1286I GDGCHC 2 cut(s) 55, 477
BspACI CCGC 5 cut(s) 60, 155, 301, 455, 516
BspANI GGCC 2 cut(s) 158, 293
BspCNI CTCAG 1 cut(s) 69
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 4 cut(s) 52, 247, 294, 501
BspT104I TTCGAA 2 cut(s) 368, 383
BspT107I GGYRCC 1 cut(s) 50
BsrI ACTGG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 2 cut(s) 199, 403
BstBI TTCGAA 2 cut(s) 368, 383
BstC8I GCNNGC 1 cut(s) 487
BstDEI CTNAG 1 cut(s) 56
BstEII GGTNACC 1 cut(s) 118
BstF5I GGATG 1 cut(s) 168
BstFNI CGCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 2 cut(s) 24, 27
BstNI CCWGG 1 cut(s) 269
BstPI GGTNACC 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 267
BstSFI CTRYAG 1 cut(s) 399
BstSLI GKGCMC 1 cut(s) 55
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 2 cut(s) 5, 14
BsuRI GGCC 2 cut(s) 158, 293
BtsCI GGATG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 487
Cfr13I GGNCC 2 cut(s) 292, 441
Csp6I GTAC 1 cut(s) 44
CviAII CATG 1 cut(s) 193
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 1 cut(s) 56
DraIII CACNNNGTG 1 cut(s) 549
EaeI YGGCCR 1 cut(s) 156
EciI GGCGGA 1 cut(s) 531
Ecl136II GAGCTC 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 477
Eco32I GATATC 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 441
Eco53kI GAGCTC 1 cut(s) 475
Eco91I GGTNACC 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 475
EcoO65I GGTNACC 1 cut(s) 118
EcoRI GAATTC 2 cut(s) 316, 394
EcoRII CCWGG 1 cut(s) 267
EcoRV GATATC 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 477
FaeI CATG 1 cut(s) 196
FaiI YATR 2 cut(s) 194, 261
FatI CATG 1 cut(s) 192
Fnu4HI GCNGC 4 cut(s) 19, 28, 61, 156
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 477
Fsp4HI GCNGC 4 cut(s) 19, 28, 61, 156
FspBI CTAG 1 cut(s) 255
GluI GCNGC 4 cut(s) 19, 28, 61, 156
HaeIII GGCC 2 cut(s) 158, 293
HapII CCGG 1 cut(s) 82
Hin1II CATG 1 cut(s) 196
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HinfI GANTC 2 cut(s) 141, 331
HpaII CCGG 1 cut(s) 82
HphI GGTGA 2 cut(s) 112, 539
Hpy166II GTNNAC 1 cut(s) 330
Hpy188III TCNNGA 1 cut(s) 460
Hpy8I GTNNAC 1 cut(s) 330
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 2 cut(s) 199, 403
HpyCH4V TGCA 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 27
HpyF3I CTNAG 1 cut(s) 56
Hsp92II CATG 1 cut(s) 196
LmnI GCTCC 3 cut(s) 245, 472, 480
LpnPI CCDG 8 cut(s) 51, 95, 161, 254, 281, 341, 498, 510
Lsp1109I GCAGC 2 cut(s) 5, 14
LweI GCATC 2 cut(s) 39, 115
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 118
MhlI GDGCHC 2 cut(s) 55, 477
MluCI AATT 7 cut(s) 12, 86, 238, 316, 385, 394, 533
MlyI GAGTC 1 cut(s) 325
MnlI CCTC 7 cut(s) 65, 106, 139, 197, 337, 370, 490
MroXI GAANNNNTTC 1 cut(s) 224
MseI TTAA 3 cut(s) 432, 465, 562
MspA1I CMGCKG 1 cut(s) 60
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 2 cut(s) 24, 27
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 4 cut(s) 52, 247, 294, 501
NmuCI GTSAC 1 cut(s) 118
NspV TTCGAA 2 cut(s) 368, 383
PdmI GAANNNNTTC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 141
PkrI GCNGC 4 cut(s) 20, 29, 62, 157
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PsiI TTATAA 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 267
PspEI GGTNACC 1 cut(s) 118
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 4 cut(s) 52, 247, 294, 501
PspPI GGNCC 2 cut(s) 292, 441
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SacI GAGCTC 1 cut(s) 477
SaqAI TTAA 3 cut(s) 432, 465, 562
SatI GCNGC 4 cut(s) 19, 28, 61, 156
Sau96I GGNCC 2 cut(s) 292, 441
ScaI AGTACT 1 cut(s) 45
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 1 cut(s) 269
SduI GDGCHC 2 cut(s) 55, 477
SetI ASST 9 cut(s) 70, 120, 150, 290, 381, 426, 477, 501, 529
SfaNI GCATC 2 cut(s) 39, 115
SfcI CTRYAG 1 cut(s) 399
SfuI TTCGAA 2 cut(s) 368, 383
SinI GGWCC 1 cut(s) 441
Sse9I AATT 7 cut(s) 12, 86, 238, 316, 385, 394, 533
SsiI CCGC 5 cut(s) 60, 155, 301, 455, 516
SspMI CTAG 1 cut(s) 255
SstI GAGCTC 1 cut(s) 477
StyD4I CCNGG 1 cut(s) 267
TaaI ACNGT 2 cut(s) 199, 403
TaqI TCGA 6 cut(s) 98, 342, 368, 383, 408, 495
TaqII GACCGA 1 cut(s) 94
TasI AATT 7 cut(s) 12, 86, 238, 316, 385, 394, 533
TatI WGTACW 1 cut(s) 43
TauI GCSGC 2 cut(s) 63, 158
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 3 cut(s) 432, 465, 562
Tru9I TTAA 3 cut(s) 432, 465, 562
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 2 cut(s) 18, 27
Tsp45I GTSAC 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 441
XapI RAATTY 6 cut(s) 12, 238, 316, 385, 394, 533
XmnI GAANNNNTTC 1 cut(s) 224
XspI CTAG 1 cut(s) 255
ZrmI AGTACT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.