RLG00000024981

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0013696
Physical Location & Seq
Reverse (-)
41038603 .. 41039205
603 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024981

Sequence Viewer

Length: 603 bp
ATGGTCGGGAAGTGTTGTTGTATCGTGATTGGCCTCATTTTCGGACTTTTTGTTTTGGCCGGCATCTCCATTTTAGTGTACTTTCTCGTAATTGCCAAGAGCATGCATAATACGCTGGTCCATTATGCGGTCACTGATGCCTCCCTGACCAAGTTCGACCTCACCGCCAATAACACCTTTCTCGACTACAACCTTAACCTCAAACTAAACCTTGAAAACCGTAGCCCCTTGGATTACAACTTCGACCTATTGGAGGCCGTGCCGGTTTTCAAGAGCCAAAACCTAAATGACATGACCAATCTTTCGAAGCCTTTCTACCTAGAACACAAGACCAATGTGACATTCCCGGCATTGTTTGCCGGGAACCACTCGGTGGCTCTCGGGGCTCAGGATGTTTTTGATTTCGGGAAAGCTGATGTCTTTGATATTGTTTTGAAGATTAACAGTGAGTATTGGGCTAAGAGTGATTCGAAGAAGGTTAGTCTTAAGCAGGAGATGGCATGCTACTTGAAGGTCCCTCTGAATTCCAACGGAACAAATGCTGGTGAGAGTTTTCAGTTTACCGAGTGCAAGAAAACTGAACTCGACATTAACAAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

201

Amino Acids

22.36

Weight (kDa)

5.79

Isoelectric Point (pI)

32.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 373
AciI CCGC 2 cut(s) 128, 165
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 523
AdeI CACNNNGTG 1 cut(s) 373
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 3 cut(s) 127, 253, 373
AflII CTTAAG 1 cut(s) 485
AgsI TTSAA 4 cut(s) 215, 271, 436, 511
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AluBI AGCT 1 cut(s) 413
AluI AGCT 1 cut(s) 413
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 3 cut(s) 31, 57, 255
ApoI RAATTY 1 cut(s) 523
ArsI GACNNNNNNTTYG 2 cut(s) 286, 318
Asp700I GAANNNNTTC 1 cut(s) 311
AspS9I GGNCC 2 cut(s) 118, 514
AsuC2I CCSGG 2 cut(s) 347, 361
AsuHPI GGTGA 2 cut(s) 154, 557
AsuII TTCGAA 2 cut(s) 305, 470
AvaI CYCGRG 1 cut(s) 380
AvaII GGWCC 2 cut(s) 118, 514
BanII GRGCYC 1 cut(s) 388
BarI GAAGNNNNNNTAC 2 cut(s) 299, 331
BccI CCATC 1 cut(s) 490
BceAI ACGGC 1 cut(s) 242
BcnI CCSGG 2 cut(s) 347, 361
BfaI CTAG 2 cut(s) 320, 601
BfrI CTTAAG 1 cut(s) 485
Bme1390I CCNGG 2 cut(s) 347, 361
Bme18I GGWCC 2 cut(s) 118, 514
BmeT110I CYCGRG 1 cut(s) 380
BmgT120I GGNCC 2 cut(s) 118, 514
BmiI GGNNCC 2 cut(s) 365, 516
BmrFI CCNGG 2 cut(s) 347, 361
BmsI GCATC 2 cut(s) 72, 127
Bpu10I CCTNAGC 1 cut(s) 387
Bpu14I TTCGAA 2 cut(s) 305, 470
BpuMI CCSGG 2 cut(s) 347, 361
BsaJI CCNNGG 1 cut(s) 228
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 253, 373
Bse118I RCCGGY 2 cut(s) 59, 262
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 3 cut(s) 127, 253, 373
BseMII CTCAG 1 cut(s) 401
BshFI GGCC 3 cut(s) 33, 59, 257
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 4 cut(s) 60, 263, 347, 360
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 3 cut(s) 127, 253, 373
BsmFI GGGAC 1 cut(s) 500
BsnI GGCC 3 cut(s) 33, 59, 257
BsoBI CYCGRG 1 cut(s) 380
Bsp119I TTCGAA 2 cut(s) 305, 470
Bsp1286I GDGCHC 1 cut(s) 388
BspACI CCGC 2 cut(s) 128, 165
BspANI GGCC 3 cut(s) 33, 59, 257
BspCNI CTCAG 1 cut(s) 400
BspLI GGNNCC 2 cut(s) 365, 516
BspT104I TTCGAA 2 cut(s) 305, 470
BspTI CTTAAG 1 cut(s) 485
BsrFI RCCGGY 2 cut(s) 59, 262
BssAI RCCGGY 2 cut(s) 59, 262
BssECI CCNNGG 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 228
Bst4CI ACNGT 2 cut(s) 221, 446
BstAFI CTTAAG 1 cut(s) 485
BstAPI GCANNNNNTGC 1 cut(s) 356
BstBI TTCGAA 2 cut(s) 305, 470
BstC8I GCNNGC 3 cut(s) 61, 104, 502
BstDEI CTNAG 2 cut(s) 387, 459
BstENI CCTNNNNNAGG 1 cut(s) 251
BstF5I GGATG 1 cut(s) 397
BstMWI GCNNNNNNNGC 3 cut(s) 112, 356, 383
BstNSI RCATGY 2 cut(s) 106, 504
BstSCI CCNGG 2 cut(s) 345, 359
BsuRI GGCC 3 cut(s) 33, 59, 257
BtsCI GGATG 1 cut(s) 397
BtsIMutI CAGTG 2 cut(s) 132, 451
Cac8I GCNNGC 3 cut(s) 61, 104, 502
Cfr10I RCCGGY 2 cut(s) 59, 262
Cfr13I GGNCC 2 cut(s) 118, 514
Csp6I GTAC 1 cut(s) 79
CviAII CATG 3 cut(s) 103, 292, 501
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 2 cut(s) 387, 459
DraIII CACNNNGTG 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 388
Eco47I GGWCC 2 cut(s) 118, 514
Eco88I CYCGRG 1 cut(s) 380
EcoNI CCTNNNNNAGG 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 514
EcoRI GAATTC 1 cut(s) 523
EcoT14I CCWWGG 1 cut(s) 228
EcoT22I ATGCAT 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 3 cut(s) 106, 295, 504
FaiI YATR 5 cut(s) 104, 108, 126, 293, 502
FaqI GGGAC 1 cut(s) 500
FatI CATG 3 cut(s) 102, 291, 500
FokI GGATG 1 cut(s) 404
FriOI GRGCYC 1 cut(s) 388
FspBI CTAG 2 cut(s) 320, 601
HaeIII GGCC 3 cut(s) 33, 59, 257
HapII CCGG 4 cut(s) 60, 263, 347, 360
Hin1II CATG 3 cut(s) 106, 295, 504
HinfI GANTC 1 cut(s) 467
HpaII CCGG 4 cut(s) 60, 263, 347, 360
HphI GGTGA 2 cut(s) 154, 557
Hpy166II GTNNAC 2 cut(s) 79, 561
Hpy188I TCNGA 2 cut(s) 44, 522
Hpy188III TCNNGA 6 cut(s) 7, 25, 182, 271, 389, 406
Hpy8I GTNNAC 2 cut(s) 79, 561
HpyAV CCTTC 2 cut(s) 469, 505
HpyCH4III ACNGT 2 cut(s) 221, 446
HpyCH4V TGCA 2 cut(s) 106, 570
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 356, 383
HpyF3I CTNAG 2 cut(s) 387, 459
Hsp92II CATG 3 cut(s) 106, 295, 504
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
LpnPI CCDG 9 cut(s) 73, 101, 158, 276, 360, 373, 374, 476, 528
LweI GCATC 2 cut(s) 72, 127
MaeI CTAG 2 cut(s) 320, 601
MaeIII GTNAC 2 cut(s) 130, 337
MboII GAAGA 2 cut(s) 448, 484
MhlI GDGCHC 1 cut(s) 388
MluCI AATT 2 cut(s) 90, 523
MmeI TCCRAC 1 cut(s) 552
MnlI CCTC 6 cut(s) 44, 151, 170, 209, 247, 528
Mph1103I ATGCAT 1 cut(s) 108
MroNI GCCGGC 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 311
MseI TTAA 4 cut(s) 195, 441, 486, 591
MslI CAYNNNNRTG 1 cut(s) 74
MspCI CTTAAG 1 cut(s) 485
MspI CCGG 4 cut(s) 60, 263, 347, 360
MspR9I CCNGG 2 cut(s) 347, 361
MwoI GCNNNNNNNGC 3 cut(s) 112, 356, 383
NaeI GCCGGC 1 cut(s) 61
NciI CCSGG 2 cut(s) 347, 361
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 3 cut(s) 106, 295, 504
NlaIV GGNNCC 2 cut(s) 365, 516
NmuCI GTSAC 2 cut(s) 130, 337
NsiI ATGCAT 1 cut(s) 108
NspI RCATGY 2 cut(s) 106, 504
NspV TTCGAA 2 cut(s) 305, 470
PaeI GCATGC 2 cut(s) 106, 504
PdiI GCCGGC 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 467
PflMI CCANNNNNTGG 1 cut(s) 373
PpuMI RGGWCCY 1 cut(s) 514
Psp5II RGGWCCY 1 cut(s) 514
PspN4I GGNNCC 2 cut(s) 365, 516
PspPI GGNCC 2 cut(s) 118, 514
PspPPI RGGWCCY 1 cut(s) 514
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 4 cut(s) 195, 441, 486, 591
Sau96I GGNCC 2 cut(s) 118, 514
ScrFI CCNGG 2 cut(s) 347, 361
SduI GDGCHC 1 cut(s) 388
SfaNI GCATC 2 cut(s) 72, 127
SfuI TTCGAA 2 cut(s) 305, 470
SinI GGWCC 2 cut(s) 118, 514
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
SphI GCATGC 2 cut(s) 106, 504
Sse9I AATT 2 cut(s) 90, 523
SsiI CCGC 2 cut(s) 128, 165
SspMI CTAG 2 cut(s) 320, 601
StyD4I CCNGG 2 cut(s) 345, 359
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 2 cut(s) 221, 446
TaqI TCGA 6 cut(s) 156, 183, 243, 305, 470, 585
TasI AATT 2 cut(s) 90, 523
TatI WGTACW 1 cut(s) 78
TfiI GAWTC 1 cut(s) 467
Tru1I TTAA 4 cut(s) 195, 441, 486, 591
Tru9I TTAA 4 cut(s) 195, 441, 486, 591
TscAI CASTG 2 cut(s) 139, 451
TseFI GTSAC 2 cut(s) 130, 337
Tsp45I GTSAC 2 cut(s) 130, 337
TspGWI ACGGA 1 cut(s) 546
TspRI CASTG 2 cut(s) 139, 451
Van91I CCANNNNNTGG 1 cut(s) 373
Vha464I CTTAAG 1 cut(s) 485
VpaK11BI GGWCC 2 cut(s) 118, 514
XagI CCTNNNNNAGG 1 cut(s) 251
XapI RAATTY 1 cut(s) 523
XceI RCATGY 2 cut(s) 106, 504
XmnI GAANNNNTTC 1 cut(s) 311
XspI CTAG 2 cut(s) 320, 601
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.