Rh3CG109000

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0013696
Physical Location & Seq
Forward (+)
8607790 .. 8608441
652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG109000.1

Sequence Viewer

Length: 603 bp
ATGGTCGGGAAGTGTTGTTGTATCGTGATTGGCCTCATTTTCGGACTTTTTGTTTTGGCCGGCGTCTCCATTTTAGTGTACTTTCTCGTAATTGCCAAGAGCATACATAATGCGCTGGTCCATTATGAGGTCACTGATGCCTCCCTGACCAAGTTCGACCTCACCGCCAATAACACCTTCCTCGACTACAACCTTACCCTCAAACTAAACCTTGAAAACCGTAGCCCCTTGGATTACAACTTCGACCTATTGGAGGCCGTGCCGGTTTTCAAGAGCCAAAACCTAAATGACATGACCAATCTTTCGAAGCCTTTCTACCTAGAACACAAGACCAATGTGACATTCCCGGCATTGTTTGCCGGGAACCACTCGGTGGCCCTCGGGGCTCAGGAGGCTTTTGATTTCGGGAAAGCTGATGTCTTTGATATTGTTTTGAAGATTAACAGTGAGTATTGGGCTAAGAGTGATTCGAAGAAGGTTAGTCTTAAGCAGGAGATGGCATGCTACTTGAAGGTCCCTCTGAATTCCAACGGAACAAATGCTGGTGAGAGTTTTCAGATTACCAAGTGCGAGAAAACTGAACTCGACATTAACAAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

200

Amino Acids

22.29

Weight (kDa)

5.57

Isoelectric Point (pI)

26.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 373
AciI CCGC 1 cut(s) 165
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 523
AcyI GRCGYC 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 373
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 3 cut(s) 127, 253, 373
AflII CTTAAG 1 cut(s) 485
AgsI TTSAA 4 cut(s) 215, 271, 436, 511
AjuI GAANNNNNNNTTGG 4 cut(s) 161, 193, 326, 358
AluBI AGCT 1 cut(s) 413
AluI AGCT 1 cut(s) 413
Alw26I GTCTC 1 cut(s) 70
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 4 cut(s) 31, 57, 255, 375
ApoI RAATTY 1 cut(s) 523
ArsI GACNNNNNNTTYG 2 cut(s) 286, 318
Asp700I GAANNNNTTC 1 cut(s) 311
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 3 cut(s) 118, 376, 514
AsuC2I CCSGG 2 cut(s) 347, 361
AsuHPI GGTGA 2 cut(s) 154, 557
AsuII TTCGAA 2 cut(s) 305, 470
AvaI CYCGRG 1 cut(s) 380
AvaII GGWCC 2 cut(s) 118, 514
BanII GRGCYC 1 cut(s) 388
BarI GAAGNNNNNNTAC 2 cut(s) 299, 331
BccI CCATC 1 cut(s) 490
BceAI ACGGC 1 cut(s) 242
BcnI CCSGG 2 cut(s) 347, 361
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 2 cut(s) 320, 601
BfrI CTTAAG 1 cut(s) 485
BglI GCCNNNNNGGC 1 cut(s) 383
Bme1390I CCNGG 2 cut(s) 347, 361
Bme18I GGWCC 2 cut(s) 118, 514
BmeT110I CYCGRG 1 cut(s) 380
BmgT120I GGNCC 3 cut(s) 118, 376, 514
BmiI GGNNCC 2 cut(s) 365, 516
BmrFI CCNGG 2 cut(s) 347, 361
BmsI GCATC 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 387
Bpu14I TTCGAA 2 cut(s) 305, 470
BpuMI CCSGG 2 cut(s) 347, 361
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 228, 379
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 253, 373
Bse118I RCCGGY 2 cut(s) 59, 262
BseDI CCNNGG 2 cut(s) 228, 379
BseLI CCNNNNNNNGG 3 cut(s) 127, 253, 373
BseMII CTCAG 1 cut(s) 401
BshFI GGCC 4 cut(s) 33, 59, 257, 377
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 4 cut(s) 60, 263, 347, 360
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 3 cut(s) 127, 253, 373
BsmAI GTCTC 1 cut(s) 70
BsmBI CGTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 500
BsnI GGCC 4 cut(s) 33, 59, 257, 377
BsoBI CYCGRG 1 cut(s) 380
Bsp119I TTCGAA 2 cut(s) 305, 470
Bsp1286I GDGCHC 1 cut(s) 388
BspACI CCGC 1 cut(s) 165
BspANI GGCC 4 cut(s) 33, 59, 257, 377
BspCNI CTCAG 1 cut(s) 400
BspLI GGNNCC 2 cut(s) 365, 516
BspT104I TTCGAA 2 cut(s) 305, 470
BspTI CTTAAG 1 cut(s) 485
BsrFI RCCGGY 2 cut(s) 59, 262
BssAI RCCGGY 2 cut(s) 59, 262
BssECI CCNNGG 2 cut(s) 228, 379
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 228
Bst4CI ACNGT 2 cut(s) 221, 446
BstACI GRCGYC 1 cut(s) 63
BstAFI CTTAAG 1 cut(s) 485
BstAPI GCANNNNNTGC 1 cut(s) 356
BstBI TTCGAA 2 cut(s) 305, 470
BstC8I GCNNGC 2 cut(s) 61, 502
BstDEI CTNAG 2 cut(s) 387, 459
BstENI CCTNNNNNAGG 1 cut(s) 251
BstHHI GCGC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 70
BstMWI GCNNNNNNNGC 3 cut(s) 356, 383, 392
BstNSI RCATGY 1 cut(s) 504
BstSCI CCNGG 2 cut(s) 345, 359
BsuRI GGCC 4 cut(s) 33, 59, 257, 377
BtsIMutI CAGTG 2 cut(s) 132, 451
Cac8I GCNNGC 2 cut(s) 61, 502
CfoI GCGC 1 cut(s) 115
Cfr10I RCCGGY 2 cut(s) 59, 262
Cfr13I GGNCC 3 cut(s) 118, 376, 514
CseI GACGC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 79
CviAII CATG 2 cut(s) 292, 501
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 2 cut(s) 387, 459
DraIII CACNNNGTG 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 388
Eco47I GGWCC 2 cut(s) 118, 514
Eco88I CYCGRG 1 cut(s) 380
EcoNI CCTNNNNNAGG 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 514
EcoRI GAATTC 1 cut(s) 523
EcoT14I CCWWGG 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 2 cut(s) 295, 504
FaiI YATR 5 cut(s) 104, 108, 126, 293, 502
FaqI GGGAC 1 cut(s) 500
FatI CATG 2 cut(s) 291, 500
FriOI GRGCYC 1 cut(s) 388
FspBI CTAG 2 cut(s) 320, 601
GlaI GCGC 1 cut(s) 114
HaeIII GGCC 4 cut(s) 33, 59, 257, 377
HapII CCGG 4 cut(s) 60, 263, 347, 360
HgaI GACGC 1 cut(s) 52
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 2 cut(s) 295, 504
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HinfI GANTC 1 cut(s) 467
HpaII CCGG 4 cut(s) 60, 263, 347, 360
HphI GGTGA 2 cut(s) 154, 557
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 3 cut(s) 44, 522, 558
Hpy188III TCNNGA 5 cut(s) 7, 25, 271, 389, 406
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 3 cut(s) 187, 469, 505
HpyCH4III ACNGT 2 cut(s) 221, 446
HpyF10VI GCNNNNNNNGC 3 cut(s) 356, 383, 392
HpyF3I CTNAG 2 cut(s) 387, 459
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 2 cut(s) 295, 504
HspAI GCGC 1 cut(s) 113
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
LpnPI CCDG 9 cut(s) 73, 101, 158, 276, 360, 373, 374, 476, 528
LweI GCATC 1 cut(s) 127
MaeI CTAG 2 cut(s) 320, 601
MaeIII GTNAC 2 cut(s) 130, 337
MboII GAAGA 2 cut(s) 448, 484
MhlI GDGCHC 1 cut(s) 388
MluCI AATT 2 cut(s) 90, 523
MmeI TCCRAC 1 cut(s) 552
MroNI GCCGGC 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 311
MseI TTAA 3 cut(s) 441, 486, 591
MslI CAYNNNNRTG 1 cut(s) 74
MspCI CTTAAG 1 cut(s) 485
MspI CCGG 4 cut(s) 60, 263, 347, 360
MspR9I CCNGG 2 cut(s) 347, 361
MwoI GCNNNNNNNGC 3 cut(s) 356, 383, 392
NaeI GCCGGC 1 cut(s) 61
NciI CCSGG 2 cut(s) 347, 361
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 2 cut(s) 295, 504
NlaIV GGNNCC 2 cut(s) 365, 516
NmuCI GTSAC 2 cut(s) 130, 337
NspI RCATGY 1 cut(s) 504
NspV TTCGAA 2 cut(s) 305, 470
PaeI GCATGC 1 cut(s) 504
PdiI GCCGGC 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 467
PflMI CCANNNNNTGG 1 cut(s) 373
PpuMI RGGWCCY 1 cut(s) 514
Psp5II RGGWCCY 1 cut(s) 514
PspN4I GGNNCC 2 cut(s) 365, 516
PspPI GGNCC 3 cut(s) 118, 376, 514
PspPPI RGGWCCY 1 cut(s) 514
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 3 cut(s) 441, 486, 591
Sau96I GGNCC 3 cut(s) 118, 376, 514
ScrFI CCNGG 2 cut(s) 347, 361
SduI GDGCHC 1 cut(s) 388
SfaNI GCATC 1 cut(s) 127
SfuI TTCGAA 2 cut(s) 305, 470
SinI GGWCC 2 cut(s) 118, 514
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
SphI GCATGC 1 cut(s) 504
Sse9I AATT 2 cut(s) 90, 523
SsiI CCGC 1 cut(s) 165
SspMI CTAG 2 cut(s) 320, 601
StyD4I CCNGG 2 cut(s) 345, 359
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 2 cut(s) 221, 446
TaqI TCGA 6 cut(s) 156, 183, 243, 305, 470, 585
TasI AATT 2 cut(s) 90, 523
TatI WGTACW 1 cut(s) 78
TfiI GAWTC 1 cut(s) 467
Tru1I TTAA 3 cut(s) 441, 486, 591
Tru9I TTAA 3 cut(s) 441, 486, 591
TscAI CASTG 2 cut(s) 139, 451
TseFI GTSAC 2 cut(s) 130, 337
Tsp45I GTSAC 2 cut(s) 130, 337
TspGWI ACGGA 1 cut(s) 546
TspRI CASTG 2 cut(s) 139, 451
Van91I CCANNNNNTGG 1 cut(s) 373
Vha464I CTTAAG 1 cut(s) 485
VpaK11BI GGWCC 2 cut(s) 118, 514
XagI CCTNNNNNAGG 1 cut(s) 251
XapI RAATTY 1 cut(s) 523
XceI RCATGY 1 cut(s) 504
XmnI GAANNNNTTC 1 cut(s) 311
XspI CTAG 2 cut(s) 320, 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.