Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0013696

Physical Location & Seq

Genomic Coordinates Reverse (-)

13838164 .. 13838733

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G111700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTTGGAACTGGAAAAAATGTTGCTGCTGTTGCTGCATTCTCATCATCGTATTTTTCATCGCCATCCTCACTGCCACGCTCGTCATTCGCGAATACAGCCCTCAGCATTCGATCAACTACCAGGTGACCGATGCATCGCTGACCCAATTCAACTTGACGACCAATAAAATCCTCCAGTTCAATCTAGCCACCACCATAAATGTTGAAAACCCTAACAAGAGGTCTGACTTCCACTATGAGAAGTTTGAAGCCGTCGCTTCCTACAAAAGCCAGGATTTGAAAAATACTAAATTCGATCCGTTCGAGGTAGAACACAAAGATAAGCATCCTTTGAATGCAGTGTTCAAGGGGGAGCAATCGGTGTCTCTTCTGGATGATGAGGTTTCAAAGTTTAAGGCCACCACGGTTTTTGACATCGTTATCAAATTGAATGTCAAGCATTGGGCCAAGTATACTACATTCAAGATTACTGAGGAGATGAAGATGAAATGCAACTTGAAGGTTCCTTTAAATTCCAACGGAAAATCAACTGGAAAATTTGAGGTTGCTAAGTGTGATAAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

190

Amino Acids

21.79

Weight (kDa)

8.7

Isoelectric Point (pI)

27.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013696)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10090
malus_domestica	MD12G1035100.v1.1 MD14G1021800.v1.1 MD14G1021900.v1.1
prunus_persica	Prupe.6G291900_v2.0.a1 Prupe.7G111700_v2.0.a1 Prupe.7G111800_v2.0.a1
pyrus_communis	pycom14g02100
rosa_chinensis	RchiOBHm_Chr3g0460791
rosa_laevigata	RLG00000024981
rosa_multiflora	Rmu_sc0007678.1_g000020
rosa_roxburghii	Rroxscaffold_6G00419220
rosa_rugosa	Rorug03G0046500
rosa_samantha	Rh3AG103400 Rh3BG107100 Rh3CG109000 Rh3DG108900
rosa_wichuraiana	Rw3G008800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	455
AccII	CGCG	1 cut(s)	93
AclWI	GGATC	1 cut(s)	293
AcsI	RAATTY	3 cut(s)	293, 514, 539
AjnI	CCWGG	2 cut(s)	123, 273
Alw26I	GTCTC	1 cut(s)	372
AlwI	GGATC	1 cut(s)	293
AoxI	GGCC	2 cut(s)	399, 447
ApeKI	GCWGC	2 cut(s)	27, 36
ApoI	RAATTY	3 cut(s)	293, 514, 539
ArsI	GACNNNNNNTTYG	2 cut(s)	420, 452
AspS9I	GGNCC	1 cut(s)	447
AsuHPI	GGTGA	1 cut(s)	139
BbvCI	CCTCAGC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	14, 23
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	239
BciT130I	CCWGG	2 cut(s)	125, 275
BcoDI	GTCTC	1 cut(s)	372
BfaI	CTAG	1 cut(s)	188
BisI	GCNGC	2 cut(s)	28, 37
BlsI	GCNGC	2 cut(s)	29, 38
Bme1390I	CCNGG	2 cut(s)	125, 275
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	1 cut(s)	507
BmrFI	CCNGG	2 cut(s)	125, 275
BmsI	GCATC	3 cut(s)	124, 146, 337
BpmI	CTGGAG	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	405
Bse1I	ACTGG	3 cut(s)	17, 178, 538
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	125, 275
BseDI	CCNNGG	1 cut(s)	405
BseGI	GGATG	3 cut(s)	66, 328, 382
BseJI	GATNNNNATC	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	119, 465
BseNI	ACTGG	3 cut(s)	17, 178, 538
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	2 cut(s)	14, 23
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	401, 449
BsmAI	GTCTC	1 cut(s)	372
BsmI	GAATGC	3 cut(s)	39, 109, 343
BsnI	GGCC	2 cut(s)	401, 449
Bsp143I	GATC	2 cut(s)	114, 298
Bsp68I	TCGCGA	1 cut(s)	93
BspANI	GGCC	2 cut(s)	401, 449
BspCNI	CTCAG	2 cut(s)	118, 466
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	507
BspPI	GGATC	1 cut(s)	293
BsrI	ACTGG	3 cut(s)	17, 178, 538
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	2 cut(s)	114, 298
BssNAI	GTATAC	1 cut(s)	456
Bst1107I	GTATAC	1 cut(s)	456
Bst2UI	CCWGG	2 cut(s)	125, 275
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	1 cut(s)	375
BstDEI	CTNAG	3 cut(s)	105, 474, 552
BstDSI	CCRYGG	1 cut(s)	405
BstEII	GGTNACC	1 cut(s)	127
BstF5I	GGATG	3 cut(s)	66, 328, 382
BstFNI	CGCG	1 cut(s)	93
BstKTI	GATC	2 cut(s)	117, 301
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	2 cut(s)	114, 298
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 36, 99
BstNI	CCWGG	2 cut(s)	125, 275
BstPI	GGTNACC	1 cut(s)	127
BstSCI	CCNGG	2 cut(s)	123, 273
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	2 cut(s)	14, 23
BstZ17I	GTATAC	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	401, 449
BtgI	CCRYGG	1 cut(s)	405
BtgZI	GCGATG	2 cut(s)	46, 123
BtsCI	GGATG	3 cut(s)	66, 328, 382
BtsI	GCAGTG	2 cut(s)	72, 348
BtsIMutI	CAGTG	2 cut(s)	72, 348
BtuMI	TCGCGA	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	447
CsiI	ACCWGGT	1 cut(s)	123
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviJI	RGCY	7 cut(s)	5, 102, 191, 254, 273, 401, 449
CviKI_1	RGCY	7 cut(s)	5, 102, 191, 254, 273, 401, 449
DdeI	CTNAG	3 cut(s)	105, 474, 552
DpnI	GATC	2 cut(s)	116, 300
DpnII	GATC	2 cut(s)	114, 298
DraI	TTTAAA	1 cut(s)	513
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco91I	GGTNACC	1 cut(s)	127
EcoO65I	GGTNACC	1 cut(s)	127
EcoRII	CCWGG	2 cut(s)	123, 273
EcoT22I	ATGCAT	1 cut(s)	139
FaiI	YATR	3 cut(s)	200, 240, 456
FblI	GTMKAC	1 cut(s)	455
Fnu4HI	GCNGC	2 cut(s)	28, 37
FokI	GGATG	3 cut(s)	53, 315, 389
Fsp4HI	GCNGC	2 cut(s)	28, 37
FspBI	CTAG	1 cut(s)	188
GluI	GCNGC	2 cut(s)	28, 37
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	401, 449
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	3 cut(s)	92, 374, 466
Hpy8I	GTNNAC	1 cut(s)	456
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	496
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	4 cut(s)	39, 137, 341, 495
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 36, 99
HpyF3I	CTNAG	3 cut(s)	105, 474, 552
Kzo9I	GATC	2 cut(s)	114, 298
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	7 cut(s)	110, 137, 191, 260, 287, 359, 519
Lsp1109I	GCAGC	2 cut(s)	14, 23
LweI	GCATC	3 cut(s)	124, 146, 337
MabI	ACCWGGT	1 cut(s)	123
MaeI	CTAG	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	2 cut(s)	116, 300
MboI	GATC	2 cut(s)	114, 298
MboII	GAAGA	2 cut(s)	362, 496
MluCI	AATT	5 cut(s)	149, 293, 428, 514, 539
MmeI	TCCRAC	1 cut(s)	543
MnlI	CCTC	8 cut(s)	80, 114, 185, 216, 301, 376, 469, 538
Mph1103I	ATGCAT	1 cut(s)	139
MseI	TTAA	2 cut(s)	396, 512
MspR9I	CCNGG	2 cut(s)	125, 275
Mva1269I	GAATGC	3 cut(s)	39, 109, 343
MvaI	CCWGG	2 cut(s)	125, 275
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	3 cut(s)	33, 36, 99
NdeII	GATC	2 cut(s)	114, 298
NlaIV	GGNNCC	1 cut(s)	507
NmuCI	GTSAC	1 cut(s)	127
NruI	TCGCGA	1 cut(s)	93
NsiI	ATGCAT	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 303
PctI	GAATGC	3 cut(s)	39, 109, 343
PkrI	GCNGC	2 cut(s)	29, 38
Psp6I	CCWGG	2 cut(s)	123, 273
PspEI	GGTNACC	1 cut(s)	127
PspGI	CCWGG	2 cut(s)	123, 273
PspN4I	GGNNCC	1 cut(s)	507
PspPI	GGNCC	1 cut(s)	447
RruI	TCGCGA	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	396, 512
SatI	GCNGC	2 cut(s)	28, 37
Sau3AI	GATC	2 cut(s)	114, 298
Sau96I	GGNCC	1 cut(s)	447
ScrFI	CCNGG	2 cut(s)	125, 275
SetI	ASST	6 cut(s)	129, 227, 312, 387, 507, 549
SexAI	ACCWGGT	1 cut(s)	123
SfaNI	GCATC	3 cut(s)	124, 146, 337
Sse9I	AATT	5 cut(s)	149, 293, 428, 514, 539
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	2 cut(s)	123, 273
TaaI	ACNGT	1 cut(s)	409
TaqI	TCGA	3 cut(s)	113, 297, 306
TaqII	GACCGA	1 cut(s)	146
TasI	AATT	5 cut(s)	149, 293, 428, 514, 539
Tru1I	TTAA	2 cut(s)	396, 512
Tru9I	TTAA	2 cut(s)	396, 512
TscAI	CASTG	2 cut(s)	79, 348
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	2 cut(s)	27, 36
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	49, 497, 503
TspGWI	ACGGA	2 cut(s)	291, 537
TspRI	CASTG	2 cut(s)	79, 348
XapI	RAATTY	3 cut(s)	293, 514, 539
XmiI	GTMKAC	1 cut(s)	455
XspI	CTAG	1 cut(s)	188
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.