Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006591

Physical Location & Seq

Genomic Coordinates Forward (+)

4385599 .. 4387727

Gene Structure 2129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1045900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGATGGCAAAGAAAAGGCAAACGCAGCTTGGGGTTGCCCAGCACAAGAATAATACCTCCACTGGTGGTCTAATTGAGTCTTCAAACTCCGATAATGATCCTGATCTGCAAGATAGTTGGGTGATAGTTAAGAAGCAGAGAGTCAAAATTCTGATACCTCCCCTGCCTGTTGCTAATAAATCTCCACCGCCAAATCCAGGACCAGTCCAGCTGCAACCTGTGGCCAGAGAAGCGGAAGGAAACAAATCACAGTTTCCTGTCGAGACTGAGGCATTTCCTAAGACGACTTCAGTTCAGGAGCAAAAGAGGATTAAATCTATTGCTCATAAAAGGGTTGTTCAAGTTACTAGAAAATCTCCTTCTGCTGACTACGTTTCAACATTTGGGAAGTCAATCAAGCGAGATATAAGAATGGAATTACGAAATCCAGATCAGATTGCTACTTCACAGTCTCATAGAACACCGGGAGTATTTAAAACCTCAAAAGCCATCATTCAGCCAAGAAAATTACGACATGGCCCGAGTATTTTCCTTGATCAGGGAATGCTGCTGAATCAAAAGCTGAGAGCTCTGAATCTTGAGAGGAAGCTTCAGAAAGCCGGCGGGTTAAGCAGGTGGTTAGCATCACTAGGACTGGGGCAGTTTGTTAGCATTTTCCAGAGGAAAGGTCTGAGTAAGTTCCAGTTGGTGAATCTGACCATGAAGAAGCTCAAAGACATGGGTGCCAATGCAGTAGGGCCCCGTAGGAAACTGATGCACGCAATCGACTGCTTTTGCCAGCCGTGCTTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_2

Protein Analysis

265

Amino Acids

29.52

Weight (kDa)

10.6

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_2	PF07647	202 - 257	1.4e-14	SAM domain (Sterile alpha motif)
SAM_1	PF00536	203 - 257	2.3e-10	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11860 AT3G11890 AT3G11890 AT3G11890 AT3G11890 AT3G11890 AT3G11890 AT3G11890
fragaria_vesca	FvH4_6g21130 FvH4_6g21130
malus_domestica	MD14G1045900.v1.1
prunus_persica	Prupe.7G088400_v2.0.a1
pyrus_communis	pycom14g03850
rosa_chinensis	RchiOBHm_Chr3g0477561
rosa_laevigata	RLG00000023707 RLG00000023708
rosa_multiflora	Rmu_co8410605.1_g000001 Rmu_sc0000775.1_g000011
rosa_roxburghii	Rroxscaffold_6G00403840
rosa_rugosa	Rorug03G0162100
rosa_samantha	Rh3AG212000 Rh3BG245800 Rh3CG239400 Rh3DG238900 Rh5DG502100
rosa_wichuraiana	Rw3G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	603
Acc36I	ACCTGC	1 cut(s)	603
AccB1I	GGYRCC	1 cut(s)	722
AciI	CCGC	3 cut(s)	188, 233, 603
AclWI	GGATC	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	147
AcuI	CTGAAG	2 cut(s)	273, 575
AfiI	CCNNNNNNNGG	2 cut(s)	197, 538
AgsI	TTSAA	3 cut(s)	84, 341, 378
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	6 cut(s)	28, 211, 562, 569, 589, 709
AluI	AGCT	6 cut(s)	28, 211, 562, 569, 589, 709
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	2 cut(s)	257, 456
AlwI	GGATC	1 cut(s)	92
Ama87I	CYCGRG	1 cut(s)	520
AoxI	GGCC	3 cut(s)	222, 517, 737
ApaI	GGGCCC	1 cut(s)	741
ApeKI	GCWGC	3 cut(s)	25, 211, 547
ApoI	RAATTY	1 cut(s)	147
AspS9I	GGNCC	4 cut(s)	200, 518, 737, 738
AsuC2I	CCSGG	1 cut(s)	465
AsuHPI	GGTGA	2 cut(s)	133, 700
AvaI	CYCGRG	1 cut(s)	520
AvaII	GGWCC	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	741
BalI	TGGCCA	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	722
BanII	GRGCYC	2 cut(s)	571, 741
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	571
BbvI	GCAGC	3 cut(s)	37, 198, 534
BccI	CCATC	1 cut(s)	497
BceAI	ACGGC	1 cut(s)	766
BciT130I	CCWGG	1 cut(s)	198
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	1 cut(s)	465
BcoDI	GTCTC	2 cut(s)	257, 456
BfaI	CTAG	2 cut(s)	348, 629
BfuAI	ACCTGC	1 cut(s)	603
BisI	GCNGC	3 cut(s)	26, 212, 548
BlsI	GCNGC	3 cut(s)	27, 213, 549
Bme1390I	CCNGG	2 cut(s)	198, 465
Bme18I	GGWCC	1 cut(s)	200
BmeT110I	CYCGRG	1 cut(s)	520
BmgT120I	GGNCC	4 cut(s)	200, 518, 737, 738
BmiI	GGNNCC	3 cut(s)	724, 739, 740
BmrFI	CCNGG	2 cut(s)	198, 465
BmrI	ACTGGG	1 cut(s)	644
BmsI	GCATC	2 cut(s)	632, 744
BmuI	ACTGGG	1 cut(s)	644
BpiI	GAAGAC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	599
BpuMI	CCSGG	1 cut(s)	465
BsaBI	GATNNNNATC	2 cut(s)	96, 102
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 538
Bse118I	RCCGGY	1 cut(s)	599
Bse1I	ACTGG	4 cut(s)	67, 203, 639, 682
Bse8I	GATNNNNATC	2 cut(s)	96, 102
BseBI	CCWGG	1 cut(s)	198
BseJI	GATNNNNATC	2 cut(s)	96, 102
BseLI	CCNNNNNNNGG	2 cut(s)	197, 538
BseMII	CTCAG	3 cut(s)	258, 554, 662
BseNI	ACTGG	4 cut(s)	67, 203, 639, 682
BseSI	GKGCMC	1 cut(s)	741
BseXI	GCAGC	3 cut(s)	37, 198, 534
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	3 cut(s)	224, 519, 739
BshNI	GGYRCC	1 cut(s)	722
BsiHKAI	GWGCWC	1 cut(s)	571
BsiHKCI	CYCGRG	1 cut(s)	520
BsiSI	CCGG	2 cut(s)	464, 600
BslI	CCNNNNNNNGG	2 cut(s)	197, 538
BsmAI	GTCTC	2 cut(s)	257, 456
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	3 cut(s)	224, 519, 739
BsoBI	CYCGRG	1 cut(s)	520
Bsp120I	GGGCCC	1 cut(s)	737
Bsp1286I	GDGCHC	2 cut(s)	571, 741
Bsp143I	GATC	4 cut(s)	97, 103, 430, 535
BspACI	CCGC	3 cut(s)	188, 233, 603
BspANI	GGCC	3 cut(s)	224, 519, 739
BspCNI	CTCAG	3 cut(s)	259, 555, 663
BspLI	GGNNCC	3 cut(s)	724, 739, 740
BspMI	ACCTGC	1 cut(s)	603
BspPI	GGATC	1 cut(s)	92
BspT107I	GGYRCC	1 cut(s)	722
BsrFI	RCCGGY	1 cut(s)	599
BsrI	ACTGG	4 cut(s)	67, 203, 639, 682
BssAI	RCCGGY	1 cut(s)	599
BssMI	GATC	4 cut(s)	97, 103, 430, 535
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	2 cut(s)	252, 450
BstC8I	GCNNGC	3 cut(s)	601, 759, 779
BstDEI	CTNAG	4 cut(s)	267, 279, 563, 671
BstENI	CCTNNNNNAGG	1 cut(s)	536
BstKTI	GATC	4 cut(s)	100, 106, 433, 538
BstMAI	GTCTC	2 cut(s)	257, 456
BstMBI	GATC	4 cut(s)	97, 103, 430, 535
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 230, 609, 783
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	2 cut(s)	196, 463
BstSLI	GKGCMC	1 cut(s)	741
BstV1I	GCAGC	3 cut(s)	37, 198, 534
BstV2I	GAAGAC	1 cut(s)	72
BsuRI	GGCC	3 cut(s)	224, 519, 739
BtsIMutI	CAGTG	1 cut(s)	60
BveI	ACCTGC	1 cut(s)	603
Cac8I	GCNNGC	3 cut(s)	601, 759, 779
Cfr10I	RCCGGY	1 cut(s)	599
Cfr13I	GGNCC	4 cut(s)	200, 518, 737, 738
CviAII	CATG	3 cut(s)	515, 700, 718
DdeI	CTNAG	4 cut(s)	267, 279, 563, 671
DpnI	GATC	4 cut(s)	99, 105, 432, 537
DpnII	GATC	4 cut(s)	97, 103, 430, 535
DraI	TTTAAA	1 cut(s)	475
EaeI	YGGCCR	1 cut(s)	222
Ecl136II	GAGCTC	1 cut(s)	569
Eco24I	GRGCYC	2 cut(s)	571, 741
Eco47I	GGWCC	1 cut(s)	200
Eco53kI	GAGCTC	1 cut(s)	569
Eco57I	CTGAAG	2 cut(s)	273, 575
Eco88I	CYCGRG	1 cut(s)	520
EcoICRI	GAGCTC	1 cut(s)	569
EcoNI	CCTNNNNNAGG	1 cut(s)	536
EcoO109I	RGGNCCY	2 cut(s)	737, 738
EcoRII	CCWGG	1 cut(s)	196
EcoT38I	GRGCYC	2 cut(s)	571, 741
FaeI	CATG	3 cut(s)	518, 703, 721
FaiI	YATR	6 cut(s)	327, 407, 456, 516, 701, 719
FatI	CATG	3 cut(s)	514, 699, 717
FauI	CCCGC	1 cut(s)	596
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	3 cut(s)	26, 212, 548
FriOI	GRGCYC	2 cut(s)	571, 741
Fsp4HI	GCNGC	3 cut(s)	26, 212, 548
FspBI	CTAG	2 cut(s)	348, 629
GluI	GCNGC	3 cut(s)	26, 212, 548
GsaI	CCCAGC	1 cut(s)	43
HaeIII	GGCC	3 cut(s)	224, 519, 739
HapII	CCGG	2 cut(s)	464, 600
Hin1II	CATG	3 cut(s)	518, 703, 721
HindIII	AAGCTT	1 cut(s)	587
HinfI	GANTC	5 cut(s)	77, 141, 553, 574, 691
HpaII	CCGG	2 cut(s)	464, 600
HphI	GGTGA	2 cut(s)	133, 700
Hpy188I	TCNGA	7 cut(s)	91, 153, 435, 573, 594, 672, 696
Hpy188III	TCNNGA	6 cut(s)	101, 262, 296, 428, 578, 658
HpyAV	CCTTC	2 cut(s)	230, 369
HpyCH4III	ACNGT	2 cut(s)	252, 450
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	4 cut(s)	109, 214, 731, 757
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 230, 609, 783
HpyF3I	CTNAG	4 cut(s)	267, 279, 563, 671
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	3 cut(s)	518, 703, 721
KroI	GCCGGC	1 cut(s)	599
KroNI	GCCGGC	1 cut(s)	601
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	4 cut(s)	97, 103, 430, 535
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	3 cut(s)	37, 198, 534
LweI	GCATC	2 cut(s)	632, 744
MaeI	CTAG	2 cut(s)	348, 629
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	4 cut(s)	99, 105, 432, 537
MboI	GATC	4 cut(s)	97, 103, 430, 535
MboII	GAAGA	2 cut(s)	72, 715
MhlI	GDGCHC	2 cut(s)	571, 741
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	4 cut(s)	72, 147, 416, 506
MluNI	TGGCCA	1 cut(s)	224
MlyI	GAGTC	2 cut(s)	86, 150
MnlI	CCTC	7 cut(s)	67, 168, 262, 300, 490, 576, 654
Mox20I	TGGCCA	1 cut(s)	224
MroNI	GCCGGC	1 cut(s)	599
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	5 cut(s)	129, 312, 474, 608, 793
Msp20I	TGGCCA	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	211
MspI	CCGG	2 cut(s)	464, 600
MspR9I	CCNGG	2 cut(s)	198, 465
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	4 cut(s)	25, 230, 609, 783
NaeI	GCCGGC	1 cut(s)	601
NciI	CCSGG	1 cut(s)	465
NdeII	GATC	4 cut(s)	97, 103, 430, 535
NgoMIV	GCCGGC	1 cut(s)	599
NlaIII	CATG	3 cut(s)	518, 703, 721
NlaIV	GGNNCC	3 cut(s)	724, 739, 740
PaqCI	CACCTGC	1 cut(s)	603
PctI	GAATGC	1 cut(s)	549
PdiI	GCCGGC	1 cut(s)	601
PfeI	GAWTC	3 cut(s)	553, 574, 691
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	3 cut(s)	27, 213, 549
PleI	GAGTC	2 cut(s)	85, 149
PpsI	GAGTC	2 cut(s)	85, 149
Psp124BI	GAGCTC	1 cut(s)	571
Psp6I	CCWGG	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	3 cut(s)	724, 739, 740
PspOMI	GGGCCC	1 cut(s)	737
PspPI	GGNCC	4 cut(s)	200, 518, 737, 738
PvuII	CAGCTG	1 cut(s)	211
SacI	GAGCTC	1 cut(s)	571
SaqAI	TTAA	5 cut(s)	129, 312, 474, 608, 793
SatI	GCNGC	3 cut(s)	26, 212, 548
Sau3AI	GATC	4 cut(s)	97, 103, 430, 535
Sau96I	GGNCC	4 cut(s)	200, 518, 737, 738
SchI	GAGTC	2 cut(s)	86, 150
ScrFI	CCNGG	2 cut(s)	198, 465
SduI	GDGCHC	2 cut(s)	571, 741
SfaNI	GCATC	2 cut(s)	632, 744
SinI	GGWCC	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	4 cut(s)	72, 147, 416, 506
SsiI	CCGC	3 cut(s)	188, 233, 603
SspMI	CTAG	2 cut(s)	348, 629
SstI	GAGCTC	1 cut(s)	571
StyD4I	CCNGG	2 cut(s)	196, 463
TaaI	ACNGT	2 cut(s)	252, 450
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	2 cut(s)	261, 765
TasI	AATT	4 cut(s)	72, 147, 416, 506
TfiI	GAWTC	3 cut(s)	553, 574, 691
Tru1I	TTAA	5 cut(s)	129, 312, 474, 608, 793
Tru9I	TTAA	5 cut(s)	129, 312, 474, 608, 793
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	3 cut(s)	25, 211, 547
TspDTI	ATGAA	1 cut(s)	716
TspRI	CASTG	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	200
XagI	CCTNNNNNAGG	1 cut(s)	536
XapI	RAATTY	1 cut(s)	147
XspI	CTAG	2 cut(s)	348, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.