RLG00000023708

Sterile alpha motif.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006591
Physical Location & Seq
Reverse (-)
27312292 .. 27315297
3006 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023708

Sequence Viewer

Length: 819 bp
ATGGCTGTTGCCAGATGGCCTACCGATTGTCTGCTAATGGCGAAGAAAAGGCAAAGACAGCTGGTGGAAAATCCCCCGCACAAGAAAAGTACTCTGAGTGGTGGTCTTATTGACGCTTCAAACTCAGACAACGATCTGGATCTGCAGGATAGTTGGGTGATAGTCAAAAAGCAGAGAGTCAACATTTTAGTACCTGGACTTCCTGTTGCTAATAAATCACCACTCCCAAGCCCAGAACCAAGTCAGCTGCAACTCGTGGCTAGAGAAACAGTAGAAAGTGGACCACAGCTTCCTGCCGATACACATCCCAAAACGACTATAGTTCATGAGAAAAAGAAGATTAAACCTGTTGCCCCTAAAAGGGCTGTGCAACTAGCTAAGAAAGCTTCTCCTGCTGCTGAATACGTTCCAACCGTTTCCCAGTCAATGAGGCGAGAATTAAGCACAAAATCACGAACCCCAGATCAGATGGCTACTTCACAGTATCAGAGAGCTCTAGGAGTATCTATGACCTCGAAAGCCATCATGCAGCGAAGAAGATTACAACATGTTTTCCTGGATCAGGGAATGTTGCTGAATGAAAGGCTGAGAGCTCGGAATATTGAGAGGAAGCTTCAGAATGCTGGTGGGTTAAGCAGGTGGTTAGCATCATTGGGACTGGAGCAGTTTGTTAGAATTTTTCAGAGGAAAGGTTTCAGTAAATTTCAGTTGGTGAATTTGAACATGAAAAAGCTCAAAGATATGGGTGCAAATGCAGTTGGCCCAAGAAGGAAATTGATGCATGCAATAGACTGTTTTTGCCAACCATCCTATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_2

Protein Analysis

273

Amino Acids

30.64

Weight (kDa)

10.44

Isoelectric Point (pI)

64.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_2 PF07647 210 - 265 1.3e-14 SAM domain (Sterile alpha motif)
SAM_1 PF00536 211 - 265 3.3e-09 SAM domain (Sterile alpha motif)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 627
Acc36I ACCTGC 1 cut(s) 627
AciI CCGC 1 cut(s) 77
AclWI GGATC 2 cut(s) 147, 567
AcsI RAATTY 3 cut(s) 675, 701, 715
AcuI CTGAAG 1 cut(s) 599
AfaI GTAC 2 cut(s) 91, 192
AfiI CCNNNNNNNGG 3 cut(s) 360, 361, 562
AflIII ACRYGT 1 cut(s) 547
AgsI TTSAA 2 cut(s) 120, 721
AjnI CCWGG 2 cut(s) 193, 555
AluBI AGCT 9 cut(s) 61, 247, 289, 377, 386, 494, 593, 613, 733
AluI AGCT 9 cut(s) 61, 247, 289, 377, 386, 494, 593, 613, 733
Alw21I GWGCWC 2 cut(s) 496, 595
AlwI GGATC 2 cut(s) 147, 567
AoxI GGCC 2 cut(s) 17, 760
ApeKI GCWGC 3 cut(s) 247, 395, 529
ApoI RAATTY 3 cut(s) 675, 701, 715
Asp700I GAANNNNTTC 2 cut(s) 405, 692
AspS9I GGNCC 2 cut(s) 281, 761
AsuHPI GGTGA 3 cut(s) 169, 210, 724
AvaII GGWCC 1 cut(s) 281
BanII GRGCYC 2 cut(s) 496, 595
BarI GAAGNNNNNNTAC 2 cut(s) 183, 215
BauI CACGAG 1 cut(s) 254
Bbv12I GWGCWC 2 cut(s) 496, 595
BbvI GCAGC 3 cut(s) 234, 382, 541
BccI CCATC 4 cut(s) 9, 463, 530, 814
BciT130I CCWGG 2 cut(s) 195, 557
BfaI CTAG 3 cut(s) 261, 374, 497
BfmI CTRYAG 2 cut(s) 143, 318
BfuAI ACCTGC 1 cut(s) 627
BisI GCNGC 3 cut(s) 248, 396, 530
BlsI GCNGC 3 cut(s) 249, 397, 531
BmcAI AGTACT 1 cut(s) 91
Bme1390I CCNGG 2 cut(s) 195, 557
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 281, 761
BmrFI CCNGG 2 cut(s) 195, 557
BmrI ACTGGG 1 cut(s) 415
BmsI GCATC 2 cut(s) 656, 768
BmuI ACTGGG 1 cut(s) 415
BpmI CTGGAG 1 cut(s) 680
BsaBI GATNNNNATC 2 cut(s) 138, 303
Bsc4I CCNNNNNNNGG 3 cut(s) 360, 361, 562
Bse1I ACTGG 2 cut(s) 421, 663
Bse8I GATNNNNATC 2 cut(s) 138, 303
BseBI CCWGG 2 cut(s) 195, 557
BseGI GGATG 2 cut(s) 304, 806
BseJI GATNNNNATC 2 cut(s) 138, 303
BseLI CCNNNNNNNGG 3 cut(s) 360, 361, 562
BseMII CTCAG 3 cut(s) 86, 138, 578
BseNI ACTGG 2 cut(s) 421, 663
BseXI GCAGC 3 cut(s) 234, 382, 541
BshFI GGCC 2 cut(s) 19, 762
BsiHKAI GWGCWC 2 cut(s) 496, 595
BslFI GGGAC 1 cut(s) 669
BslI CCNNNNNNNGG 3 cut(s) 360, 361, 562
BsmFI GGGAC 1 cut(s) 669
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 2 cut(s) 19, 762
Bsp1286I GDGCHC 2 cut(s) 496, 595
Bsp143I GATC 4 cut(s) 133, 139, 463, 559
BspACI CCGC 1 cut(s) 77
BspANI GGCC 2 cut(s) 19, 762
BspCNI CTCAG 3 cut(s) 87, 137, 579
BspHI TCATGA 1 cut(s) 325
BspMAI CTGCAG 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 627
BspPI GGATC 2 cut(s) 147, 567
BsrI ACTGG 2 cut(s) 421, 663
BssMI GATC 4 cut(s) 133, 139, 463, 559
BssSI CACGAG 1 cut(s) 254
Bst2BI CACGAG 1 cut(s) 254
Bst2UI CCWGG 2 cut(s) 195, 557
Bst4CI ACNGT 4 cut(s) 271, 415, 483, 794
BstC8I GCNNGC 1 cut(s) 783
BstDEI CTNAG 4 cut(s) 95, 124, 378, 587
BstENI CCTNNNNNAGG 1 cut(s) 560
BstF5I GGATG 2 cut(s) 304, 806
BstKTI GATC 4 cut(s) 136, 142, 466, 562
BstMBI GATC 4 cut(s) 133, 139, 463, 559
BstMWI GCNNNNNNNGC 3 cut(s) 58, 383, 392
BstNI CCWGG 2 cut(s) 195, 557
BstNSI RCATGY 2 cut(s) 551, 785
BstSCI CCNGG 2 cut(s) 193, 555
BstSFI CTRYAG 2 cut(s) 143, 318
BstV1I GCAGC 3 cut(s) 234, 382, 541
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 2 cut(s) 19, 762
BtsCI GGATG 2 cut(s) 304, 806
BveI ACCTGC 1 cut(s) 627
Cac8I GCNNGC 1 cut(s) 783
CciI TCATGA 1 cut(s) 325
Cfr13I GGNCC 2 cut(s) 281, 761
CseI GACGC 1 cut(s) 122
Csp6I GTAC 2 cut(s) 90, 191
CviAII CATG 5 cut(s) 326, 526, 548, 724, 782
CviQI GTAC 2 cut(s) 90, 191
DdeI CTNAG 4 cut(s) 95, 124, 378, 587
DpnI GATC 4 cut(s) 135, 141, 465, 561
DpnII GATC 4 cut(s) 133, 139, 463, 559
Ecl136II GAGCTC 2 cut(s) 494, 593
Eco24I GRGCYC 2 cut(s) 496, 595
Eco47I GGWCC 1 cut(s) 281
Eco53kI GAGCTC 2 cut(s) 494, 593
Eco57I CTGAAG 1 cut(s) 599
EcoICRI GAGCTC 2 cut(s) 494, 593
EcoNI CCTNNNNNAGG 1 cut(s) 560
EcoRII CCWGG 2 cut(s) 193, 555
EcoT22I ATGCAT 1 cut(s) 783
EcoT38I GRGCYC 2 cut(s) 496, 595
FaeI CATG 5 cut(s) 329, 529, 551, 727, 785
FaiI YATR 8 cut(s) 320, 327, 509, 527, 549, 725, 743, 783
FaqI GGGAC 1 cut(s) 669
FatI CATG 5 cut(s) 325, 525, 547, 723, 781
FauI CCCGC 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 248, 396, 530
FokI GGATG 2 cut(s) 291, 793
FriOI GRGCYC 2 cut(s) 496, 595
Fsp4HI GCNGC 3 cut(s) 248, 396, 530
FspBI CTAG 3 cut(s) 261, 374, 497
GluI GCNGC 3 cut(s) 248, 396, 530
GsuI CTGGAG 1 cut(s) 680
HaeIII GGCC 2 cut(s) 19, 762
HgaI GACGC 1 cut(s) 122
Hin1II CATG 5 cut(s) 329, 529, 551, 727, 785
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HindIII AAGCTT 2 cut(s) 384, 611
HinfI GANTC 1 cut(s) 177
HphI GGTGA 3 cut(s) 169, 210, 724
Hpy166II GTNNAC 2 cut(s) 181, 281
Hpy188I TCNGA 7 cut(s) 96, 127, 468, 489, 597, 618, 684
Hpy188III TCNNGA 3 cut(s) 137, 326, 453
Hpy8I GTNNAC 2 cut(s) 181, 281
HpyAV CCTTC 1 cut(s) 762
HpyCH4III ACNGT 4 cut(s) 271, 415, 483, 794
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 8 cut(s) 145, 250, 370, 529, 749, 755, 781, 785
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 383, 392
HpyF3I CTNAG 4 cut(s) 95, 124, 378, 587
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 5 cut(s) 329, 529, 551, 727, 785
Kzo9I GATC 4 cut(s) 133, 139, 463, 559
LmnI GCTCC 1 cut(s) 661
Lsp1109I GCAGC 3 cut(s) 234, 382, 541
LweI GCATC 2 cut(s) 656, 768
MaeI CTAG 3 cut(s) 261, 374, 497
MaeII ACGT 1 cut(s) 405
MalI GATC 4 cut(s) 135, 141, 465, 561
MboI GATC 4 cut(s) 133, 139, 463, 559
MboII GAAGA 4 cut(s) 55, 349, 546, 549
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 2 cut(s) 496, 595
MluCI AATT 5 cut(s) 437, 675, 701, 715, 773
MlyI GAGTC 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 434
MnlI CCTC 4 cut(s) 423, 523, 600, 678
Mph1103I ATGCAT 1 cut(s) 783
MroXI GAANNNNTTC 2 cut(s) 405, 692
MseI TTAA 4 cut(s) 342, 440, 632, 817
MspA1I CMGCKG 2 cut(s) 61, 247
MspR9I CCNGG 2 cut(s) 195, 557
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 2 cut(s) 195, 557
MwoI GCNNNNNNNGC 3 cut(s) 58, 383, 392
NdeII GATC 4 cut(s) 133, 139, 463, 559
NlaIII CATG 5 cut(s) 329, 529, 551, 727, 785
NsiI ATGCAT 1 cut(s) 783
NspI RCATGY 2 cut(s) 551, 785
PaeI GCATGC 1 cut(s) 785
PagI TCATGA 1 cut(s) 325
PaqCI CACCTGC 1 cut(s) 627
PciI ACATGT 1 cut(s) 547
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PctI GAATGC 1 cut(s) 625
PdmI GAANNNNTTC 2 cut(s) 405, 692
PfoI TCCNGGA 1 cut(s) 555
PkrI GCNGC 3 cut(s) 249, 397, 531
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PscI ACATGT 1 cut(s) 547
Psp124BI GAGCTC 2 cut(s) 496, 595
Psp6I CCWGG 2 cut(s) 193, 555
PspGI CCWGG 2 cut(s) 193, 555
PspPI GGNCC 2 cut(s) 281, 761
PstI CTGCAG 1 cut(s) 147
PsuI RGATCY 1 cut(s) 139
PvuII CAGCTG 2 cut(s) 61, 247
RsaI GTAC 2 cut(s) 91, 192
RsaNI GTAC 2 cut(s) 90, 191
SacI GAGCTC 2 cut(s) 496, 595
SaqAI TTAA 4 cut(s) 342, 440, 632, 817
SatI GCNGC 3 cut(s) 248, 396, 530
Sau3AI GATC 4 cut(s) 133, 139, 463, 559
Sau96I GGNCC 2 cut(s) 281, 761
ScaI AGTACT 1 cut(s) 91
SchI GAGTC 1 cut(s) 186
ScrFI CCNGG 2 cut(s) 195, 557
SduI GDGCHC 2 cut(s) 496, 595
SfaNI GCATC 2 cut(s) 656, 768
SfcI CTRYAG 2 cut(s) 143, 318
SinI GGWCC 1 cut(s) 281
SphI GCATGC 1 cut(s) 785
Sse9I AATT 5 cut(s) 437, 675, 701, 715, 773
SsiI CCGC 1 cut(s) 77
SspI AATATT 1 cut(s) 601
SspMI CTAG 3 cut(s) 261, 374, 497
SstI GAGCTC 2 cut(s) 496, 595
StyD4I CCNGG 2 cut(s) 193, 555
TaaI ACNGT 4 cut(s) 271, 415, 483, 794
TaiI ACGT 1 cut(s) 408
TaqI TCGA 1 cut(s) 515
TasI AATT 5 cut(s) 437, 675, 701, 715, 773
TatI WGTACW 1 cut(s) 89
Tru1I TTAA 4 cut(s) 342, 440, 632, 817
Tru9I TTAA 4 cut(s) 342, 440, 632, 817
TseI GCWGC 3 cut(s) 247, 395, 529
TspDTI ATGAA 3 cut(s) 314, 594, 740
VpaK11BI GGWCC 1 cut(s) 281
XagI CCTNNNNNAGG 1 cut(s) 560
XapI RAATTY 3 cut(s) 675, 701, 715
XceI RCATGY 2 cut(s) 551, 785
XmnI GAANNNNTTC 2 cut(s) 405, 692
XspI CTAG 3 cut(s) 261, 374, 497
ZrmI AGTACT 1 cut(s) 91
Zsp2I ATGCAT 1 cut(s) 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.