Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006591

Physical Location & Seq

Genomic Coordinates Forward (+)

22947083 .. 22951868

Gene Structure 4786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG239400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTGCTTTATTTGTCTGCCTGCATTTGCCTTTAAGAATGACCTCATTGTTTTTGGTCCGATGAACTTGTTAATTTCAGAAGCAGATTGTCTGCTAATGGCGAAGAAAAGGCAAAGACAGCTGGTGGAAAATCCCCCGCACAAGAAAAGTAGTCCGAGTGGTGGTCTTATTGACGCTTCAAACTCAGACAACGATCTGGATCTGCAGGATAGTTGGGTGATTGTCAAAAAGCAGAGAGTCAACATTTTAGTACCTGGACTTCCTGTTGCTAATAAATCACCACTCCCAAGCCCAGAACCAAGTCAGCTGCAACAACTTGTGGCTAGAGAAACAACAGTAGAAAGTGGACCACAGCTTCCTGCCGATACACATCCCAAAACGACTTTAGTTCATGAGAAAAAGAAGATTAAACCTGTTGCCCCTAAAAGGGCTGTGCAACTTGCTAAGAAAGCTTCTCCTGCTGCTGGATACGTTCCAACCGTTTCCCAGTCAATGAGGCGAGAATTAAGCACAAAATCACAAACCCCAGATCAGATGGCTACTTCACAGTATCAGAGAGCACTAGGAGTATCTATGACCTCGAAAGCCATCATGCAGCGAAGAAGATTACAACATGTTTTCCTGGATCAGGGAATGTTGCTGAATGAAAGGCTGAGAGCTCGGAATATTGAGAGGAAGATTCAGAATGCTGGTGGGTTAAGCAGGTGGTTAGCATCATTGGGACTGGGGCAGTTTGTTAGAATTTTTCAGAGGAAAGGTTTCAGTAAATTTCAGTTGGTGAATTTGAACATGAAAAAGCTCAAAGATATGGGTGCAAATGCAGTTGGGCCAAGAAGGAAATTGATGCATGCAATAGACTGCTTTTGCCAACCATCCTATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_2

Protein Analysis

294

Amino Acids

32.85

Weight (kDa)

10.21

Isoelectric Point (pI)

61.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_2	PF07647	232 - 287	2.2e-14	SAM domain (Sterile alpha motif)
SAM_1	PF00536	233 - 287	2.8e-09	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11860 AT3G11890 AT3G11890 AT3G11890 AT3G11890 AT3G11890 AT3G11890 AT3G11890
fragaria_vesca	FvH4_6g21130 FvH4_6g21130
malus_domestica	MD14G1045900.v1.1
prunus_persica	Prupe.7G088400_v2.0.a1
pyrus_communis	pycom14g03850
rosa_chinensis	RchiOBHm_Chr3g0477561
rosa_laevigata	RLG00000023707 RLG00000023708
rosa_multiflora	Rmu_co8410605.1_g000001 Rmu_sc0000775.1_g000011
rosa_roxburghii	Rroxscaffold_6G00403840
rosa_rugosa	Rorug03G0162100
rosa_samantha	Rh3AG212000 Rh3BG245800 Rh3CG239400 Rh3DG238900 Rh5DG502100
rosa_wichuraiana	Rw3G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	693
Acc36I	ACCTGC	1 cut(s)	693
AciI	CCGC	1 cut(s)	137
AclWI	GGATC	2 cut(s)	207, 633
AcsI	RAATTY	3 cut(s)	741, 767, 781
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	5 cut(s)	161, 426, 427, 464, 628
AflIII	ACRYGT	1 cut(s)	613
AgsI	TTSAA	2 cut(s)	180, 787
AjnI	CCWGG	2 cut(s)	253, 621
AluBI	AGCT	6 cut(s)	121, 307, 355, 452, 659, 799
AluI	AGCT	6 cut(s)	121, 307, 355, 452, 659, 799
Alw21I	GWGCWC	2 cut(s)	562, 661
AlwI	GGATC	2 cut(s)	207, 633
AoxI	GGCC	1 cut(s)	827
ApeKI	GCWGC	3 cut(s)	307, 461, 595
ApoI	RAATTY	3 cut(s)	741, 767, 781
Asp700I	GAANNNNTTC	1 cut(s)	758
AspS9I	GGNCC	3 cut(s)	56, 347, 827
AsuHPI	GGTGA	3 cut(s)	229, 270, 790
AvaII	GGWCC	2 cut(s)	56, 347
BanII	GRGCYC	1 cut(s)	661
BarI	GAAGNNNNNNTAC	2 cut(s)	243, 275
Bbv12I	GWGCWC	2 cut(s)	562, 661
BbvI	GCAGC	3 cut(s)	294, 448, 607
BccI	CCATC	3 cut(s)	529, 596, 880
BciT130I	CCWGG	2 cut(s)	255, 623
BciVI	GTATCC	1 cut(s)	461
BfaI	CTAG	2 cut(s)	324, 563
BfmI	CTRYAG	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	693
BfuI	GTATCC	1 cut(s)	461
BisI	GCNGC	3 cut(s)	308, 462, 596
BlsI	GCNGC	3 cut(s)	309, 463, 597
Bme1390I	CCNGG	2 cut(s)	255, 623
Bme18I	GGWCC	2 cut(s)	56, 347
BmgT120I	GGNCC	3 cut(s)	56, 347, 827
BmrFI	CCNGG	2 cut(s)	255, 623
BmrI	ACTGGG	2 cut(s)	481, 734
BmsI	GCATC	2 cut(s)	722, 834
BmuI	ACTGGG	2 cut(s)	481, 734
BsaBI	GATNNNNATC	2 cut(s)	198, 369
Bsc4I	CCNNNNNNNGG	5 cut(s)	161, 426, 427, 464, 628
Bse1I	ACTGG	2 cut(s)	487, 729
Bse8I	GATNNNNATC	2 cut(s)	198, 369
BseBI	CCWGG	2 cut(s)	255, 623
BseGI	GGATG	2 cut(s)	370, 872
BseJI	GATNNNNATC	2 cut(s)	198, 369
BseLI	CCNNNNNNNGG	5 cut(s)	161, 426, 427, 464, 628
BseMII	CTCAG	2 cut(s)	198, 644
BseNI	ACTGG	2 cut(s)	487, 729
BseXI	GCAGC	3 cut(s)	294, 448, 607
BshFI	GGCC	1 cut(s)	829
BsiHKAI	GWGCWC	2 cut(s)	562, 661
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	5 cut(s)	161, 426, 427, 464, 628
BsmFI	GGGAC	1 cut(s)	735
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	1 cut(s)	829
Bsp1286I	GDGCHC	2 cut(s)	562, 661
Bsp143I	GATC	4 cut(s)	193, 199, 529, 625
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	829
BspCNI	CTCAG	2 cut(s)	197, 645
BspHI	TCATGA	1 cut(s)	391
BspMAI	CTGCAG	1 cut(s)	207
BspMI	ACCTGC	1 cut(s)	693
BspPI	GGATC	2 cut(s)	207, 633
BsrI	ACTGG	2 cut(s)	487, 729
BssMI	GATC	4 cut(s)	193, 199, 529, 625
Bst2UI	CCWGG	2 cut(s)	255, 623
Bst4CI	ACNGT	3 cut(s)	337, 481, 549
BstC8I	GCNNGC	2 cut(s)	21, 849
BstDEI	CTNAG	3 cut(s)	184, 444, 653
BstENI	CCTNNNNNAGG	1 cut(s)	626
BstF5I	GGATG	2 cut(s)	370, 872
BstKTI	GATC	4 cut(s)	196, 202, 532, 628
BstMBI	GATC	4 cut(s)	193, 199, 529, 625
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 449, 458
BstNI	CCWGG	2 cut(s)	255, 623
BstNSI	RCATGY	2 cut(s)	617, 851
BstSCI	CCNGG	2 cut(s)	253, 621
BstSFI	CTRYAG	1 cut(s)	203
BstV1I	GCAGC	3 cut(s)	294, 448, 607
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	461
BsuRI	GGCC	1 cut(s)	829
BtsCI	GGATG	2 cut(s)	370, 872
BveI	ACCTGC	1 cut(s)	693
Cac8I	GCNNGC	2 cut(s)	21, 849
CciI	TCATGA	1 cut(s)	391
Cfr13I	GGNCC	3 cut(s)	56, 347, 827
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	5 cut(s)	392, 592, 614, 790, 848
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	3 cut(s)	184, 444, 653
DpnI	GATC	4 cut(s)	195, 201, 531, 627
DpnII	GATC	4 cut(s)	193, 199, 529, 625
Ecl136II	GAGCTC	1 cut(s)	659
Eco24I	GRGCYC	1 cut(s)	661
Eco47I	GGWCC	2 cut(s)	56, 347
Eco53kI	GAGCTC	1 cut(s)	659
EcoICRI	GAGCTC	1 cut(s)	659
EcoNI	CCTNNNNNAGG	1 cut(s)	626
EcoRII	CCWGG	2 cut(s)	253, 621
EcoT22I	ATGCAT	1 cut(s)	849
EcoT38I	GRGCYC	1 cut(s)	661
FaeI	CATG	5 cut(s)	395, 595, 617, 793, 851
FaiI	YATR	7 cut(s)	393, 575, 593, 615, 791, 809, 849
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	5 cut(s)	391, 591, 613, 789, 847
FauI	CCCGC	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	308, 462, 596
FokI	GGATG	2 cut(s)	357, 859
FriOI	GRGCYC	1 cut(s)	661
Fsp4HI	GCNGC	3 cut(s)	308, 462, 596
FspBI	CTAG	2 cut(s)	324, 563
GluI	GCNGC	3 cut(s)	308, 462, 596
HaeIII	GGCC	1 cut(s)	829
HgaI	GACGC	1 cut(s)	182
Hin1II	CATG	5 cut(s)	395, 595, 617, 793, 851
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	450
HinfI	GANTC	2 cut(s)	237, 679
HphI	GGTGA	3 cut(s)	229, 270, 790
Hpy166II	GTNNAC	2 cut(s)	241, 347
Hpy188I	TCNGA	9 cut(s)	60, 79, 156, 187, 534, 555, 663, 684, 750
Hpy188III	TCNNGA	2 cut(s)	197, 392
Hpy8I	GTNNAC	2 cut(s)	241, 347
HpyAV	CCTTC	1 cut(s)	828
HpyCH4III	ACNGT	3 cut(s)	337, 481, 549
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	9 cut(s)	23, 205, 310, 436, 595, 815, 821, 847, 851
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 449, 458
HpyF3I	CTNAG	3 cut(s)	184, 444, 653
HpySE526I	ACGT	1 cut(s)	471
Hsp92II	CATG	5 cut(s)	395, 595, 617, 793, 851
Kzo9I	GATC	4 cut(s)	193, 199, 529, 625
Lsp1109I	GCAGC	3 cut(s)	294, 448, 607
LweI	GCATC	2 cut(s)	722, 834
MaeI	CTAG	2 cut(s)	324, 563
MaeII	ACGT	1 cut(s)	471
MalI	GATC	4 cut(s)	195, 201, 531, 627
MboI	GATC	4 cut(s)	193, 199, 529, 625
MboII	GAAGA	5 cut(s)	115, 415, 612, 615, 688
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	2 cut(s)	562, 661
MluCI	AATT	6 cut(s)	72, 503, 741, 767, 781, 839
MlyI	GAGTC	1 cut(s)	246
MmeI	TCCRAC	1 cut(s)	500
MnlI	CCTC	5 cut(s)	53, 489, 589, 666, 744
Mph1103I	ATGCAT	1 cut(s)	849
MroXI	GAANNNNTTC	1 cut(s)	758
MseI	TTAA	6 cut(s)	33, 71, 408, 506, 698, 883
MspA1I	CMGCKG	2 cut(s)	121, 307
MspR9I	CCNGG	2 cut(s)	255, 623
Mva1269I	GAATGC	1 cut(s)	691
MvaI	CCWGG	2 cut(s)	255, 623
MwoI	GCNNNNNNNGC	3 cut(s)	118, 449, 458
NdeII	GATC	4 cut(s)	193, 199, 529, 625
NlaIII	CATG	5 cut(s)	395, 595, 617, 793, 851
NsiI	ATGCAT	1 cut(s)	849
NspI	RCATGY	2 cut(s)	617, 851
PaeI	GCATGC	1 cut(s)	851
PagI	TCATGA	1 cut(s)	391
PaqCI	CACCTGC	1 cut(s)	693
PciI	ACATGT	1 cut(s)	613
PcsI	WCGNNNNNNNCGW	1 cut(s)	477
PctI	GAATGC	1 cut(s)	691
PdmI	GAANNNNTTC	1 cut(s)	758
PfeI	GAWTC	1 cut(s)	679
PfoI	TCCNGGA	1 cut(s)	621
PkrI	GCNGC	3 cut(s)	309, 463, 597
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PscI	ACATGT	1 cut(s)	613
Psp124BI	GAGCTC	1 cut(s)	661
Psp6I	CCWGG	2 cut(s)	253, 621
PspGI	CCWGG	2 cut(s)	253, 621
PspPI	GGNCC	3 cut(s)	56, 347, 827
PstI	CTGCAG	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	199
PvuII	CAGCTG	2 cut(s)	121, 307
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SacI	GAGCTC	1 cut(s)	661
SaqAI	TTAA	6 cut(s)	33, 71, 408, 506, 698, 883
SatI	GCNGC	3 cut(s)	308, 462, 596
Sau3AI	GATC	4 cut(s)	193, 199, 529, 625
Sau96I	GGNCC	3 cut(s)	56, 347, 827
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	2 cut(s)	255, 623
SduI	GDGCHC	2 cut(s)	562, 661
SfaNI	GCATC	2 cut(s)	722, 834
SfcI	CTRYAG	1 cut(s)	203
SinI	GGWCC	2 cut(s)	56, 347
SphI	GCATGC	1 cut(s)	851
Sse9I	AATT	6 cut(s)	72, 503, 741, 767, 781, 839
SsiI	CCGC	1 cut(s)	137
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	2 cut(s)	324, 563
SstI	GAGCTC	1 cut(s)	661
StyD4I	CCNGG	2 cut(s)	253, 621
TaaI	ACNGT	3 cut(s)	337, 481, 549
TaiI	ACGT	1 cut(s)	474
TaqI	TCGA	1 cut(s)	581
TasI	AATT	6 cut(s)	72, 503, 741, 767, 781, 839
TfiI	GAWTC	1 cut(s)	679
Tru1I	TTAA	6 cut(s)	33, 71, 408, 506, 698, 883
Tru9I	TTAA	6 cut(s)	33, 71, 408, 506, 698, 883
TseI	GCWGC	3 cut(s)	307, 461, 595
TspDTI	ATGAA	4 cut(s)	77, 380, 660, 806
VpaK11BI	GGWCC	2 cut(s)	56, 347
XagI	CCTNNNNNAGG	1 cut(s)	626
XapI	RAATTY	3 cut(s)	741, 767, 781
XceI	RCATGY	2 cut(s)	617, 851
XmnI	GAANNNNTTC	1 cut(s)	758
XspI	CTAG	2 cut(s)	324, 563
Zsp2I	ATGCAT	1 cut(s)	849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.