Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0006591

Physical Location & Seq

Genomic Coordinates Forward (+)

21385927 .. 21386712

Gene Structure 786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG212000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCGAAGAAAAGGCAAAGACTGCTGGTGGAAAATCCCCCGCACAAGAAAAGTAGTCCGAGTGGTGGTCTTATTGACGCTTCAAACTCAGACAACGATTTGGATCTGCAGGATAGTTGGGTGATCGTCAAAAAGCAGAGAGTCAACATTTTAGTACCTGGACTTCCTGTTGCTAATAAATCACCACTCCCAAGCCCAGAACCAAGTCAGCTGCAACAACTCGTGGCTAGAGAAACAGTAGAAAGTGGACCACAGCTTCCTGCCGATACACATCCCAAAACGACTTTAGTTCATGAGAAAAAGAAGATTAAACCTGTTGCCCCTAAAAGGGCTGTGCAACTTGCTAAGAAAGCTTCTCCTGCTGCTGGATACGTTCCAACCGTTTCCCAGTCAATGAGGCGAGAATTAAGCACAAAATCACGAACCCCAGATCAGATGGCTACTTCACAGTATCAGAGAGCACTAGGAGTATCTATGGCCTCGAAAGCCATCATGCAGCGAAGAAGATTACAACATGTTTTCCTGGATCAGGGAATGTTGCTGAATGAAAGGCTGAGAGCTCGGAATATTGAGAGGAAGATTCAGAATGCTGGTGGGTTAAGCAGGTGGTTAGCATCATTGGGACTGGGGCAGTTTGTTAGAATTTTTCAGAGGAAAGGTTTCAGTAAATTTCAGTTGGTGAATTTGAACATGAAAAAGCTCAAAGATATGGGTGCAAATGCAGTTGGGCCAAGAAGGAAATTGATGCATGCAATAGACTGCTTTTGCCAACCATCCTATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_2

Protein Analysis

261

Amino Acids

29.19

Weight (kDa)

10.67

Isoelectric Point (pI)

65.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_2	PF07647	199 - 254	1.8e-14	SAM domain (Sterile alpha motif)
SAM_1	PF00536	200 - 254	2.3e-09	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11860 AT3G11890 AT3G11890 AT3G11890 AT3G11890 AT3G11890 AT3G11890 AT3G11890
fragaria_vesca	FvH4_6g21130 FvH4_6g21130
malus_domestica	MD14G1045900.v1.1
prunus_persica	Prupe.7G088400_v2.0.a1
pyrus_communis	pycom14g03850
rosa_chinensis	RchiOBHm_Chr3g0477561
rosa_laevigata	RLG00000023707 RLG00000023708
rosa_multiflora	Rmu_co8410605.1_g000001 Rmu_sc0000775.1_g000011
rosa_roxburghii	Rroxscaffold_6G00403840
rosa_rugosa	Rorug03G0162100
rosa_samantha	Rh3AG212000 Rh3BG245800 Rh3CG239400 Rh3DG238900 Rh5DG502100
rosa_wichuraiana	Rw3G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	594
Acc36I	ACCTGC	1 cut(s)	594
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	2 cut(s)	111, 534
AcsI	RAATTY	3 cut(s)	642, 668, 682
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	5 cut(s)	65, 327, 328, 365, 529
AflIII	ACRYGT	1 cut(s)	514
AgsI	TTSAA	2 cut(s)	84, 688
AjnI	CCWGG	2 cut(s)	157, 522
AluBI	AGCT	5 cut(s)	211, 256, 353, 560, 700
AluI	AGCT	5 cut(s)	211, 256, 353, 560, 700
Alw21I	GWGCWC	2 cut(s)	463, 562
AlwI	GGATC	2 cut(s)	111, 534
AoxI	GGCC	2 cut(s)	477, 728
ApeKI	GCWGC	3 cut(s)	211, 362, 496
ApoI	RAATTY	3 cut(s)	642, 668, 682
Asp700I	GAANNNNTTC	1 cut(s)	659
AspS9I	GGNCC	2 cut(s)	248, 728
AsuHPI	GGTGA	3 cut(s)	133, 174, 691
AvaII	GGWCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	562
BarI	GAAGNNNNNNTAC	2 cut(s)	147, 179
BauI	CACGAG	1 cut(s)	221
Bbv12I	GWGCWC	2 cut(s)	463, 562
BbvI	GCAGC	3 cut(s)	198, 349, 508
BccI	CCATC	3 cut(s)	430, 497, 781
BciT130I	CCWGG	2 cut(s)	159, 524
BciVI	GTATCC	1 cut(s)	362
BfaI	CTAG	2 cut(s)	228, 464
BfmI	CTRYAG	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	594
BfuI	GTATCC	1 cut(s)	362
BisI	GCNGC	3 cut(s)	212, 363, 497
BlsI	GCNGC	3 cut(s)	213, 364, 498
Bme1390I	CCNGG	2 cut(s)	159, 524
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	248, 728
BmrFI	CCNGG	2 cut(s)	159, 524
BmrI	ACTGGG	2 cut(s)	382, 635
BmsI	GCATC	2 cut(s)	623, 735
BmuI	ACTGGG	2 cut(s)	382, 635
BsaBI	GATNNNNATC	2 cut(s)	102, 270
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 327, 328, 365, 529
Bse1I	ACTGG	2 cut(s)	388, 630
Bse8I	GATNNNNATC	2 cut(s)	102, 270
BseBI	CCWGG	2 cut(s)	159, 524
BseGI	GGATG	2 cut(s)	271, 773
BseJI	GATNNNNATC	2 cut(s)	102, 270
BseLI	CCNNNNNNNGG	5 cut(s)	65, 327, 328, 365, 529
BseMII	CTCAG	2 cut(s)	102, 545
BseNI	ACTGG	2 cut(s)	388, 630
BseXI	GCAGC	3 cut(s)	198, 349, 508
BshFI	GGCC	2 cut(s)	479, 730
BsiHKAI	GWGCWC	2 cut(s)	463, 562
BslFI	GGGAC	1 cut(s)	636
BslI	CCNNNNNNNGG	5 cut(s)	65, 327, 328, 365, 529
BsmFI	GGGAC	1 cut(s)	636
BsmI	GAATGC	1 cut(s)	592
BsnI	GGCC	2 cut(s)	479, 730
Bsp1286I	GDGCHC	2 cut(s)	463, 562
Bsp143I	GATC	4 cut(s)	103, 123, 430, 526
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	2 cut(s)	479, 730
BspCNI	CTCAG	2 cut(s)	101, 546
BspHI	TCATGA	1 cut(s)	292
BspMAI	CTGCAG	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	594
BspPI	GGATC	2 cut(s)	111, 534
BsrI	ACTGG	2 cut(s)	388, 630
BssMI	GATC	4 cut(s)	103, 123, 430, 526
BssSI	CACGAG	1 cut(s)	221
Bst2BI	CACGAG	1 cut(s)	221
Bst2UI	CCWGG	2 cut(s)	159, 524
Bst4CI	ACNGT	3 cut(s)	238, 382, 450
BstAPI	GCANNNNNTGC	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	750
BstDEI	CTNAG	3 cut(s)	88, 345, 554
BstENI	CCTNNNNNAGG	1 cut(s)	527
BstF5I	GGATG	2 cut(s)	271, 773
BstKTI	GATC	4 cut(s)	106, 126, 433, 529
BstMBI	GATC	4 cut(s)	103, 123, 430, 526
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 350, 359, 485
BstNI	CCWGG	2 cut(s)	159, 524
BstNSI	RCATGY	2 cut(s)	518, 752
BstSCI	CCNGG	2 cut(s)	157, 522
BstSFI	CTRYAG	1 cut(s)	107
BstV1I	GCAGC	3 cut(s)	198, 349, 508
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	362
BsuRI	GGCC	2 cut(s)	479, 730
BtsCI	GGATG	2 cut(s)	271, 773
BveI	ACCTGC	1 cut(s)	594
Cac8I	GCNNGC	1 cut(s)	750
CciI	TCATGA	1 cut(s)	292
Cfr13I	GGNCC	2 cut(s)	248, 728
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	155
CviAII	CATG	5 cut(s)	293, 493, 515, 691, 749
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	3 cut(s)	88, 345, 554
DpnI	GATC	4 cut(s)	105, 125, 432, 528
DpnII	GATC	4 cut(s)	103, 123, 430, 526
Ecl136II	GAGCTC	1 cut(s)	560
Eco24I	GRGCYC	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	248
Eco53kI	GAGCTC	1 cut(s)	560
EcoICRI	GAGCTC	1 cut(s)	560
EcoNI	CCTNNNNNAGG	1 cut(s)	527
EcoRII	CCWGG	2 cut(s)	157, 522
EcoT22I	ATGCAT	1 cut(s)	750
EcoT38I	GRGCYC	1 cut(s)	562
FaeI	CATG	5 cut(s)	296, 496, 518, 694, 752
FaiI	YATR	7 cut(s)	294, 476, 494, 516, 692, 710, 750
FaqI	GGGAC	1 cut(s)	636
FatI	CATG	5 cut(s)	292, 492, 514, 690, 748
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	212, 363, 497
FokI	GGATG	2 cut(s)	258, 760
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	3 cut(s)	212, 363, 497
FspBI	CTAG	2 cut(s)	228, 464
GluI	GCNGC	3 cut(s)	212, 363, 497
HaeIII	GGCC	2 cut(s)	479, 730
HgaI	GACGC	1 cut(s)	86
Hin1II	CATG	5 cut(s)	296, 496, 518, 694, 752
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	2 cut(s)	141, 580
HphI	GGTGA	3 cut(s)	133, 174, 691
Hpy166II	GTNNAC	2 cut(s)	145, 248
Hpy188I	TCNGA	7 cut(s)	60, 91, 435, 456, 564, 585, 651
Hpy188III	TCNNGA	2 cut(s)	293, 420
Hpy8I	GTNNAC	2 cut(s)	145, 248
HpyAV	CCTTC	1 cut(s)	729
HpyCH4III	ACNGT	3 cut(s)	238, 382, 450
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	8 cut(s)	109, 214, 337, 496, 716, 722, 748, 752
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 350, 359, 485
HpyF3I	CTNAG	3 cut(s)	88, 345, 554
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	5 cut(s)	296, 496, 518, 694, 752
Kzo9I	GATC	4 cut(s)	103, 123, 430, 526
Lsp1109I	GCAGC	3 cut(s)	198, 349, 508
LweI	GCATC	2 cut(s)	623, 735
MaeI	CTAG	2 cut(s)	228, 464
MaeII	ACGT	1 cut(s)	372
MalI	GATC	4 cut(s)	105, 125, 432, 528
MboI	GATC	4 cut(s)	103, 123, 430, 526
MboII	GAAGA	5 cut(s)	19, 316, 513, 516, 589
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	2 cut(s)	463, 562
MluCI	AATT	5 cut(s)	404, 642, 668, 682, 740
MlyI	GAGTC	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	4 cut(s)	390, 490, 567, 645
Mph1103I	ATGCAT	1 cut(s)	750
MroXI	GAANNNNTTC	1 cut(s)	659
MseI	TTAA	4 cut(s)	309, 407, 599, 784
MspA1I	CMGCKG	1 cut(s)	211
MspR9I	CCNGG	2 cut(s)	159, 524
Mva1269I	GAATGC	1 cut(s)	592
MvaI	CCWGG	2 cut(s)	159, 524
MwoI	GCNNNNNNNGC	4 cut(s)	22, 350, 359, 485
NdeII	GATC	4 cut(s)	103, 123, 430, 526
NlaIII	CATG	5 cut(s)	296, 496, 518, 694, 752
NsiI	ATGCAT	1 cut(s)	750
NspI	RCATGY	2 cut(s)	518, 752
PaeI	GCATGC	1 cut(s)	752
PagI	TCATGA	1 cut(s)	292
PaqCI	CACCTGC	1 cut(s)	594
PciI	ACATGT	1 cut(s)	514
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PctI	GAATGC	1 cut(s)	592
PdmI	GAANNNNTTC	1 cut(s)	659
PfeI	GAWTC	1 cut(s)	580
PfoI	TCCNGGA	1 cut(s)	522
PkrI	GCNGC	3 cut(s)	213, 364, 498
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PscI	ACATGT	1 cut(s)	514
Psp124BI	GAGCTC	1 cut(s)	562
Psp6I	CCWGG	2 cut(s)	157, 522
PspGI	CCWGG	2 cut(s)	157, 522
PspPI	GGNCC	2 cut(s)	248, 728
PstI	CTGCAG	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	211
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
SacI	GAGCTC	1 cut(s)	562
SaqAI	TTAA	4 cut(s)	309, 407, 599, 784
SatI	GCNGC	3 cut(s)	212, 363, 497
Sau3AI	GATC	4 cut(s)	103, 123, 430, 526
Sau96I	GGNCC	2 cut(s)	248, 728
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	2 cut(s)	159, 524
SduI	GDGCHC	2 cut(s)	463, 562
SfaNI	GCATC	2 cut(s)	623, 735
SfcI	CTRYAG	1 cut(s)	107
SinI	GGWCC	1 cut(s)	248
SphI	GCATGC	1 cut(s)	752
Sse9I	AATT	5 cut(s)	404, 642, 668, 682, 740
SsiI	CCGC	1 cut(s)	41
SspI	AATATT	1 cut(s)	568
SspMI	CTAG	2 cut(s)	228, 464
SstI	GAGCTC	1 cut(s)	562
StyD4I	CCNGG	2 cut(s)	157, 522
TaaI	ACNGT	3 cut(s)	238, 382, 450
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	1 cut(s)	482
TasI	AATT	5 cut(s)	404, 642, 668, 682, 740
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	4 cut(s)	309, 407, 599, 784
Tru9I	TTAA	4 cut(s)	309, 407, 599, 784
TseI	GCWGC	3 cut(s)	211, 362, 496
TspDTI	ATGAA	3 cut(s)	281, 561, 707
VpaK11BI	GGWCC	1 cut(s)	248
XagI	CCTNNNNNAGG	1 cut(s)	527
XapI	RAATTY	3 cut(s)	642, 668, 682
XceI	RCATGY	2 cut(s)	518, 752
XmnI	GAANNNNTTC	1 cut(s)	659
XspI	CTAG	2 cut(s)	228, 464
Zsp2I	ATGCAT	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.