Rw3G019210

Sterile alpha motif.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0006591
Physical Location & Seq
Forward (+)
21736982 .. 21737770
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G019210.1

Sequence Viewer

Length: 747 bp
ATGGCGAAGAAAAGGCAAAGACAGCTGGTGGAAAATCCCCCGCACAAGAAAAGTACTCCGGGTGGTGGTCTTATTGACGCTTCAAACTCAGACAACGATCTGGATCTGCAGGATAGTTGGGTGATTGTCAAAAAGCAGAGAGTCAACATTTTAGTACCTGGACTTCCTGTTGCTAATAAATCACCACTCCCAAGCCCAGAACCAAGTCAGCTGCAACAACTCGTGGCTAGAGAAACAACAGTAGAAAGTGGACCACACCTTCCTGCCGATACACATCCCAAAACGACTTTAGTTCATGAGAAAAAGAAGATTAAACCTGTTGCCCCTAAAAGGGCTGTGCAACTTGCTAAGAAAGCTTCTCCTGCTGCTGATACGTTCCAACCGTTTCCCAATCAGATGGCTACTTCACAGTATCAGAGAGCACTAGGAGTATCTATGACCTCGAAAGCCATCATGCAGCGAAGAAGATTACAACATGTTTTCCTGGATCAGGGAATGTTGCTGAATGAAAGGCTGAGAGCTCGGAATATTGAGAGGAAGATTCAGAATGCTGGTGGGTTAAGCAGGTGGTTAGCATCATTGGGACTGGGGCAGTTTGTTAGAATTTTTCAGAGGAAAGGTTTCAGTAAATTTCAGTTGGTGAATTTGAACATGAAAAAGCTCAAAGATATGGGTGCAAATGCAGTTGGGCCAAGAAGGAAATTGATGCATGCAATAGACTGCTTTTGCCAACCATCCTATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_2

Protein Analysis

248

Amino Acids

27.8

Weight (kDa)

10.56

Isoelectric Point (pI)

61.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_2 PF07647 186 - 241 1.6e-14 SAM domain (Sterile alpha motif)
SAM_1 PF00536 187 - 241 2.1e-09 SAM domain (Sterile alpha motif)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 555
Acc36I ACCTGC 1 cut(s) 555
AciI CCGC 1 cut(s) 41
AclWI GGATC 2 cut(s) 111, 495
AcsI RAATTY 3 cut(s) 603, 629, 643
AfaI GTAC 2 cut(s) 55, 156
AfiI CCNNNNNNNGG 4 cut(s) 65, 330, 331, 490
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 2 cut(s) 84, 649
AjnI CCWGG 2 cut(s) 157, 483
AluBI AGCT 5 cut(s) 25, 211, 356, 521, 661
AluI AGCT 5 cut(s) 25, 211, 356, 521, 661
Alw21I GWGCWC 2 cut(s) 424, 523
AlwI GGATC 2 cut(s) 111, 495
AoxI GGCC 1 cut(s) 689
ApeKI GCWGC 3 cut(s) 211, 365, 457
ApoI RAATTY 3 cut(s) 603, 629, 643
Asp700I GAANNNNTTC 1 cut(s) 620
AspS9I GGNCC 2 cut(s) 251, 689
AsuC2I CCSGG 1 cut(s) 60
AsuHPI GGTGA 3 cut(s) 133, 174, 652
AvaII GGWCC 1 cut(s) 251
BanII GRGCYC 1 cut(s) 523
BarI GAAGNNNNNNTAC 2 cut(s) 147, 179
BauI CACGAG 1 cut(s) 221
Bbv12I GWGCWC 2 cut(s) 424, 523
BbvI GCAGC 3 cut(s) 198, 352, 469
BccI CCATC 3 cut(s) 391, 458, 742
BciT130I CCWGG 2 cut(s) 159, 485
BcnI CCSGG 1 cut(s) 60
BfaI CTAG 2 cut(s) 228, 425
BfmI CTRYAG 1 cut(s) 107
BfuAI ACCTGC 1 cut(s) 555
BisI GCNGC 3 cut(s) 212, 366, 458
BlsI GCNGC 3 cut(s) 213, 367, 459
BmcAI AGTACT 1 cut(s) 55
Bme1390I CCNGG 3 cut(s) 60, 159, 485
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 2 cut(s) 251, 689
BmrFI CCNGG 3 cut(s) 60, 159, 485
BmrI ACTGGG 1 cut(s) 596
BmsI GCATC 2 cut(s) 584, 696
BmuI ACTGGG 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 60
BsaBI GATNNNNATC 2 cut(s) 102, 273
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 330, 331, 490
Bse1I ACTGG 1 cut(s) 591
Bse8I GATNNNNATC 2 cut(s) 102, 273
BseBI CCWGG 2 cut(s) 159, 485
BseGI GGATG 2 cut(s) 274, 734
BseJI GATNNNNATC 2 cut(s) 102, 273
BseLI CCNNNNNNNGG 4 cut(s) 65, 330, 331, 490
BseMII CTCAG 2 cut(s) 102, 506
BseNI ACTGG 1 cut(s) 591
BseXI GCAGC 3 cut(s) 198, 352, 469
BshFI GGCC 1 cut(s) 691
BsiHKAI GWGCWC 2 cut(s) 424, 523
BsiSI CCGG 1 cut(s) 59
BslFI GGGAC 1 cut(s) 597
BslI CCNNNNNNNGG 4 cut(s) 65, 330, 331, 490
BsmFI GGGAC 1 cut(s) 597
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 1 cut(s) 691
Bsp1286I GDGCHC 2 cut(s) 424, 523
Bsp143I GATC 3 cut(s) 97, 103, 487
BspACI CCGC 1 cut(s) 41
BspANI GGCC 1 cut(s) 691
BspCNI CTCAG 2 cut(s) 101, 507
BspHI TCATGA 1 cut(s) 295
BspMAI CTGCAG 1 cut(s) 111
BspMI ACCTGC 1 cut(s) 555
BspPI GGATC 2 cut(s) 111, 495
BsrI ACTGG 1 cut(s) 591
BssMI GATC 3 cut(s) 97, 103, 487
BssSI CACGAG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 221
Bst2UI CCWGG 2 cut(s) 159, 485
Bst4CI ACNGT 3 cut(s) 241, 384, 411
BstC8I GCNNGC 1 cut(s) 711
BstDEI CTNAG 3 cut(s) 88, 348, 515
BstENI CCTNNNNNAGG 1 cut(s) 488
BstF5I GGATG 2 cut(s) 274, 734
BstKTI GATC 3 cut(s) 100, 106, 490
BstMBI GATC 3 cut(s) 97, 103, 487
BstMWI GCNNNNNNNGC 3 cut(s) 22, 353, 362
BstNI CCWGG 2 cut(s) 159, 485
BstNSI RCATGY 2 cut(s) 479, 713
BstSCI CCNGG 3 cut(s) 58, 157, 483
BstSFI CTRYAG 1 cut(s) 107
BstV1I GCAGC 3 cut(s) 198, 352, 469
BstX2I RGATCY 1 cut(s) 103
BstXI CCANNNNNNTGG 1 cut(s) 397
BstYI RGATCY 1 cut(s) 103
BsuRI GGCC 1 cut(s) 691
BtsCI GGATG 2 cut(s) 274, 734
BveI ACCTGC 1 cut(s) 555
Cac8I GCNNGC 1 cut(s) 711
CciI TCATGA 1 cut(s) 295
Cfr13I GGNCC 2 cut(s) 251, 689
CseI GACGC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 54, 155
CviAII CATG 5 cut(s) 296, 454, 476, 652, 710
CviQI GTAC 2 cut(s) 54, 155
DdeI CTNAG 3 cut(s) 88, 348, 515
DpnI GATC 3 cut(s) 99, 105, 489
DpnII GATC 3 cut(s) 97, 103, 487
Ecl136II GAGCTC 1 cut(s) 521
Eco24I GRGCYC 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 521
EcoICRI GAGCTC 1 cut(s) 521
EcoNI CCTNNNNNAGG 1 cut(s) 488
EcoRII CCWGG 2 cut(s) 157, 483
EcoT22I ATGCAT 1 cut(s) 711
EcoT38I GRGCYC 1 cut(s) 523
FaeI CATG 5 cut(s) 299, 457, 479, 655, 713
FaiI YATR 7 cut(s) 297, 437, 455, 477, 653, 671, 711
FaqI GGGAC 1 cut(s) 597
FatI CATG 5 cut(s) 295, 453, 475, 651, 709
FauI CCCGC 1 cut(s) 48
Fnu4HI GCNGC 3 cut(s) 212, 366, 458
FokI GGATG 2 cut(s) 261, 721
FriOI GRGCYC 1 cut(s) 523
Fsp4HI GCNGC 3 cut(s) 212, 366, 458
FspBI CTAG 2 cut(s) 228, 425
GluI GCNGC 3 cut(s) 212, 366, 458
HaeIII GGCC 1 cut(s) 691
HapII CCGG 1 cut(s) 59
HgaI GACGC 1 cut(s) 86
Hin1II CATG 5 cut(s) 299, 457, 479, 655, 713
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HindIII AAGCTT 1 cut(s) 354
HinfI GANTC 2 cut(s) 141, 541
HpaII CCGG 1 cut(s) 59
HphI GGTGA 3 cut(s) 133, 174, 652
Hpy166II GTNNAC 2 cut(s) 145, 251
Hpy188I TCNGA 6 cut(s) 91, 396, 417, 525, 546, 612
Hpy188III TCNNGA 2 cut(s) 101, 296
Hpy8I GTNNAC 2 cut(s) 145, 251
HpyAV CCTTC 2 cut(s) 269, 690
HpyCH4III ACNGT 3 cut(s) 241, 384, 411
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 8 cut(s) 109, 214, 340, 457, 677, 683, 709, 713
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 353, 362
HpyF3I CTNAG 3 cut(s) 88, 348, 515
HpySE526I ACGT 1 cut(s) 374
Hsp92II CATG 5 cut(s) 299, 457, 479, 655, 713
Kzo9I GATC 3 cut(s) 97, 103, 487
Lsp1109I GCAGC 3 cut(s) 198, 352, 469
LweI GCATC 2 cut(s) 584, 696
MaeI CTAG 2 cut(s) 228, 425
MaeII ACGT 1 cut(s) 374
MalI GATC 3 cut(s) 99, 105, 489
MboI GATC 3 cut(s) 97, 103, 487
MboII GAAGA 5 cut(s) 19, 319, 474, 477, 550
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 2 cut(s) 424, 523
MluCI AATT 4 cut(s) 603, 629, 643, 701
MlyI GAGTC 1 cut(s) 150
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 3 cut(s) 451, 528, 606
Mph1103I ATGCAT 1 cut(s) 711
MroXI GAANNNNTTC 1 cut(s) 620
MseI TTAA 3 cut(s) 312, 560, 745
MspA1I CMGCKG 2 cut(s) 25, 211
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 3 cut(s) 60, 159, 485
Mva1269I GAATGC 1 cut(s) 553
MvaI CCWGG 2 cut(s) 159, 485
MwoI GCNNNNNNNGC 3 cut(s) 22, 353, 362
NciI CCSGG 1 cut(s) 60
NdeII GATC 3 cut(s) 97, 103, 487
NlaIII CATG 5 cut(s) 299, 457, 479, 655, 713
NsiI ATGCAT 1 cut(s) 711
NspI RCATGY 2 cut(s) 479, 713
PaeI GCATGC 1 cut(s) 713
PagI TCATGA 1 cut(s) 295
PaqCI CACCTGC 1 cut(s) 555
PciI ACATGT 1 cut(s) 475
PcsI WCGNNNNNNNCGW 1 cut(s) 380
PctI GAATGC 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 620
PfeI GAWTC 1 cut(s) 541
PfoI TCCNGGA 1 cut(s) 483
PkrI GCNGC 3 cut(s) 213, 367, 459
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PscI ACATGT 1 cut(s) 475
Psp124BI GAGCTC 1 cut(s) 523
Psp6I CCWGG 2 cut(s) 157, 483
PspGI CCWGG 2 cut(s) 157, 483
PspPI GGNCC 2 cut(s) 251, 689
PstI CTGCAG 1 cut(s) 111
PsuI RGATCY 1 cut(s) 103
PvuII CAGCTG 2 cut(s) 25, 211
RsaI GTAC 2 cut(s) 55, 156
RsaNI GTAC 2 cut(s) 54, 155
SacI GAGCTC 1 cut(s) 523
SaqAI TTAA 3 cut(s) 312, 560, 745
SatI GCNGC 3 cut(s) 212, 366, 458
Sau3AI GATC 3 cut(s) 97, 103, 487
Sau96I GGNCC 2 cut(s) 251, 689
ScaI AGTACT 1 cut(s) 55
SchI GAGTC 1 cut(s) 150
ScrFI CCNGG 3 cut(s) 60, 159, 485
SduI GDGCHC 2 cut(s) 424, 523
SfaNI GCATC 2 cut(s) 584, 696
SfcI CTRYAG 1 cut(s) 107
SinI GGWCC 1 cut(s) 251
SphI GCATGC 1 cut(s) 713
Sse9I AATT 4 cut(s) 603, 629, 643, 701
SsiI CCGC 1 cut(s) 41
SspI AATATT 1 cut(s) 529
SspMI CTAG 2 cut(s) 228, 425
SstI GAGCTC 1 cut(s) 523
StyD4I CCNGG 3 cut(s) 58, 157, 483
TaaI ACNGT 3 cut(s) 241, 384, 411
TaiI ACGT 1 cut(s) 377
TaqI TCGA 1 cut(s) 443
TasI AATT 4 cut(s) 603, 629, 643, 701
TatI WGTACW 1 cut(s) 53
TfiI GAWTC 1 cut(s) 541
Tru1I TTAA 3 cut(s) 312, 560, 745
Tru9I TTAA 3 cut(s) 312, 560, 745
TseI GCWGC 3 cut(s) 211, 365, 457
TspDTI ATGAA 3 cut(s) 284, 522, 668
VpaK11BI GGWCC 1 cut(s) 251
XagI CCTNNNNNAGG 1 cut(s) 488
XapI RAATTY 3 cut(s) 603, 629, 643
XceI RCATGY 2 cut(s) 479, 713
XmnI GAANNNNTTC 1 cut(s) 620
XspI CTAG 2 cut(s) 228, 425
ZrmI AGTACT 1 cut(s) 55
Zsp2I ATGCAT 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.