Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006591

Physical Location & Seq

Genomic Coordinates Reverse (-)

27308987 .. 27309750

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023707

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCGAAGAAAAGGCAAAGACATCTGGTGGCAAATCCCCTGCACAGGAAAAATACCCTGAGTGGTTTTATTGACACTACAAACTCGACAACAAATCTGGATCTGCAAGATTGTTTGGTGATAGTCAAAAAGCAGAGAGTCAACAGTTTGGTGCGTCTACTGCCTATTGCTAATACGTCACCACTCCCAAGCCCAGAACCAATCAGTGAGCTGCAACTTGAGGACAAAATCACTAAACCCAGATCAGATGGCTACTTCACTCTGAGAGCTCGGAATCTTGAGAGGATGCTTCAGAAATCTGGTCGATTAAGCAGGTGGTTGGCATCTCTGGGACTGGAACATACAGCTTGTCAGGGTTTTTCAGAGGAAAGCTTGCAGGAAGTTTCAGACGTGAAAAAGCTCAAGGATATGGGTGCAAATGCGTTTGGGCCAAGAAGGAAATTGATTCATGCAATATACTTCTTTTGCCAGCCATTCTATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_2

Protein Analysis

162

Amino Acids

18.41

Weight (kDa)

9.81

Isoelectric Point (pI)

56.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11860 AT3G11890 AT3G11890 AT3G11890 AT3G11890 AT3G11890 AT3G11890 AT3G11890
fragaria_vesca	FvH4_6g21130 FvH4_6g21130
malus_domestica	MD14G1045900.v1.1
prunus_persica	Prupe.7G088400_v2.0.a1
pyrus_communis	pycom14g03850
rosa_chinensis	RchiOBHm_Chr3g0477561
rosa_laevigata	RLG00000023707 RLG00000023708
rosa_multiflora	Rmu_co8410605.1_g000001 Rmu_sc0000775.1_g000011
rosa_roxburghii	Rroxscaffold_6G00403840
rosa_rugosa	Rorug03G0162100
rosa_samantha	Rh3AG212000 Rh3BG245800 Rh3CG239400 Rh3DG238900 Rh5DG502100
rosa_wichuraiana	Rw3G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	303
Acc36I	ACCTGC	1 cut(s)	303
AccI	GTMKAC	1 cut(s)	157
AclWI	GGATC	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	45
AjiI	CACGTC	1 cut(s)	391
AluBI	AGCT	5 cut(s)	211, 269, 347, 372, 400
AluI	AGCT	5 cut(s)	211, 269, 347, 372, 400
Alw21I	GWGCWC	1 cut(s)	271
AlwI	GGATC	1 cut(s)	108
AoxI	GGCC	1 cut(s)	428
ApeKI	GCWGC	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	428
AsuHPI	GGTGA	2 cut(s)	130, 171
BanII	GRGCYC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	1 cut(s)	242
BfuAI	ACCTGC	1 cut(s)	303
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
BmgBI	CACGTC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	428
BmsI	GCATC	2 cut(s)	276, 332
BpuEI	CTTGAG	3 cut(s)	239, 299, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	339
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	50, 254
BseNI	ACTGG	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	198
BsgI	GTGCAG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	2 cut(s)	100, 242
BspANI	GGCC	1 cut(s)	430
BspCNI	CTCAG	2 cut(s)	51, 255
BspMI	ACCTGC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	339
BssMI	GATC	2 cut(s)	100, 242
Bst4CI	ACNGT	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	374, 470
BstDEI	CTNAG	2 cut(s)	59, 263
BstF5I	GGATG	1 cut(s)	291
BstKTI	GATC	2 cut(s)	103, 245
BstMBI	GATC	2 cut(s)	100, 242
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	430
BtrI	CACGTC	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	211
BveI	ACCTGC	1 cut(s)	303
Cac8I	GCNNGC	2 cut(s)	374, 470
Cfr13I	GGNCC	1 cut(s)	428
CseI	GACGC	1 cut(s)	143
CviAII	CATG	1 cut(s)	449
CviJI	RGCY	9 cut(s)	192, 211, 252, 269, 347, 372, 400, 430, 472
CviKI_1	RGCY	9 cut(s)	192, 211, 252, 269, 347, 372, 400, 430, 472
DdeI	CTNAG	2 cut(s)	59, 263
DpnI	GATC	2 cut(s)	102, 244
DpnII	GATC	2 cut(s)	100, 242
Ecl136II	GAGCTC	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	271
FaeI	CATG	1 cut(s)	452
FaiI	YATR	4 cut(s)	342, 410, 450, 457
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	1 cut(s)	448
FblI	GTMKAC	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	1 cut(s)	298
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	1 cut(s)	212
GluI	GCNGC	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	430
HgaI	GACGC	1 cut(s)	143
Hin1II	CATG	1 cut(s)	452
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	370
HinfI	GANTC	3 cut(s)	138, 274, 445
HphI	GGTGA	2 cut(s)	130, 171
Hpy166II	GTNNAC	2 cut(s)	142, 158
Hpy188I	TCNGA	6 cut(s)	247, 264, 273, 294, 364, 388
Hpy188III	TCNNGA	2 cut(s)	98, 278
Hpy8I	GTNNAC	2 cut(s)	142, 158
HpyAV	CCTTC	1 cut(s)	429
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	2 cut(s)	176, 390
HpyCH4V	TGCA	6 cut(s)	43, 106, 214, 376, 416, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	2 cut(s)	59, 263
HpySE526I	ACGT	2 cut(s)	176, 390
Hsp92II	CATG	1 cut(s)	452
Kzo9I	GATC	2 cut(s)	100, 242
Lsp1109I	GCAGC	1 cut(s)	198
LweI	GCATC	2 cut(s)	276, 332
MaeII	ACGT	2 cut(s)	176, 390
MaeIII	GTNAC	1 cut(s)	177
MalI	GATC	2 cut(s)	102, 244
MboI	GATC	2 cut(s)	100, 242
MboII	GAAGA	1 cut(s)	19
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	1 cut(s)	440
MlyI	GAGTC	1 cut(s)	147
MnlI	CCTC	3 cut(s)	214, 276, 358
MseI	TTAA	2 cut(s)	308, 484
MwoI	GCNNNNNNNGC	1 cut(s)	160
NdeII	GATC	2 cut(s)	100, 242
NlaIII	CATG	1 cut(s)	452
NmuCI	GTSAC	1 cut(s)	177
PaqCI	CACCTGC	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	274, 445
PkrI	GCNGC	1 cut(s)	213
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Psp124BI	GAGCTC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	100
SacI	GAGCTC	1 cut(s)	271
SaqAI	TTAA	2 cut(s)	308, 484
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	2 cut(s)	100, 242
Sau96I	GGNCC	1 cut(s)	428
SchI	GAGTC	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	8 cut(s)	179, 213, 271, 317, 349, 374, 393, 402
SfaNI	GCATC	2 cut(s)	276, 332
SmlI	CTYRAG	3 cut(s)	218, 278, 401
SmoI	CTYRAG	3 cut(s)	218, 278, 401
Sse9I	AATT	1 cut(s)	440
SstI	GAGCTC	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	2 cut(s)	179, 393
TaqI	TCGA	2 cut(s)	86, 304
TasI	AATT	1 cut(s)	440
TfiI	GAWTC	2 cut(s)	274, 445
Tru1I	TTAA	2 cut(s)	308, 484
Tru9I	TTAA	2 cut(s)	308, 484
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	177
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	1 cut(s)	437
TspRI	CASTG	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.